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Cow genome map

           
Conread name:
           
rsto211_b9.y1
        

               
Conread position:
               
105-483
               

               
Cow position:
               
chr1:82884561-82884200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 43
               

               
Conread position:
               
107-392
               

               
Cow position:
               
chr1:89497789-89498062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
108-425
               

               
Cow position:
               
chr1:43872503-43872171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
110-332
               

               
Cow position:
               
chr1:57635293-57635514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
110-418
               

               
Cow position:
               
chr1:76019861-76019554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
111-395
               

               
Cow position:
               
chr1:85028791-85029073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 85
               

               
Conread position:
               
113-333
               

               
Cow position:
               
chr1:24445790-24445575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
113-409
               

               
Cow position:
               
chr1:37322173-37321869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
120-408
               

               
Cow position:
               
chr1:71295467-71295159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
120-415
               

               
Cow position:
               
chr1:81613233-81613527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
120-417
               

               
Cow position:
               
chr1:70538451-70538752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
120-423
               

               
Cow position:
               
chr1:19568696-19569001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
215, 29
               

               
Conread position:
               
121-400
               

               
Cow position:
               
chr1:24876110-24876386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
123-265
               

               
Cow position:
               
chr1:89082952-89083094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
26, 120
               

               
Conread position:
               
123-287
               

               
Cow position:
               
chr1:41004522-41004353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 129
               

               
Conread position:
               
123-306
               

               
Cow position:
               
chr1:29671679-29671495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
123-333
               

               
Cow position:
               
chr1:24235676-24235466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
123-363
               

               
Cow position:
               
chr1:101946866-101946627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
8, 123
               

               
Conread position:
               
123-387
               

               
Cow position:
               
chr1:64251207-64250941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 91
               

               
Conread position:
               
123-395
               

               
Cow position:
               
chr1:70380305-70380024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 174
               

               
Conread position:
               
123-410
               

               
Cow position:
               
chr1:41696899-41697192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 154
               

               
Conread position:
               
123-411
               

               
Cow position:
               
chr1:29935537-29935253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
123-411
               

               
Cow position:
               
chr1:53397832-53398111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
123-411
               

               
Cow position:
               
chr1:68619093-68618800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 163
               

               
Conread position:
               
123-412
               

               
Cow position:
               
chr1:84255599-84255903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
123-415
               

               
Cow position:
               
chr1:78857480-78857190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
123-417
               

               
Cow position:
               
chr1:72068993-72068695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
129-399
               

               
Cow position:
               
chr1:83583086-83582810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
132-386
               

               
Cow position:
               
chr1:77683208-77683462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
132-394
               

               
Cow position:
               
chr1:88652481-88652754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 103
               

               
Conread position:
               
132-405
               

               
Cow position:
               
chr1:85647931-85647651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 242
               

               
Conread position:
               
133-395
               

               
Cow position:
               
chr1:92963250-92963508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
133-399
               

               
Cow position:
               
chr1:95056907-95057168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
16, 107
               

               
Conread position:
               
133-406
               

               
Cow position:
               
chr1:56477444-56477722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
133-428
               

               
Cow position:
               
chr1:97696592-97696897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
136-472
               

               
Cow position:
               
chr1:90868579-90868252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
196, 12
               

               
Conread position:
               
139-299
               

               
Cow position:
               
chr1:71946514-71946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
139-323
               

               
Cow position:
               
chr1:62920025-62920211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
139-333
               

               
Cow position:
               
chr1:44155109-44155303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
139-333
               

               
Cow position:
               
chr1:51968319-51968515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
139-353
               

               
Cow position:
               
chr1:87440326-87440544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
139-357
               

               
Cow position:
               
chr1:4374481-4374256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
139-381
               

               
Cow position:
               
chr1:42555123-42555371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
139-383
               

               
Cow position:
               
chr1:4414350-4414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 159
               

               
Conread position:
               
139-383
               

               
Cow position:
               
chr1:81355846-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
139-385
               

               
Cow position:
               
chr1:101634562-101634821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
139-386
               

               
Cow position:
               
chr1:44506825-44507083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
139-390
               

               
Cow position:
               
chr1:85774321-85774571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
139-391
               

               
Cow position:
               
chr1:37309653-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
139-394
               

               
Cow position:
               
chr1:36998050-36998303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
139-395
               

               
Cow position:
               
chr1:12464808-12464545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
139-399
               

               
Cow position:
               
chr1:18936972-18936715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
139-399
               

               
Cow position:
               
chr1:52329671-52329403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 205
               

               
Conread position:
               
139-399
               

               
Cow position:
               
chr1:69678464-69678202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
139-399
               

               
Cow position:
               
chr1:79844324-79844588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
139-401
               

               
Cow position:
               
chr1:35162265-35162535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chr1:43389190-43388921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chr1:93043887-93044148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chr1:10778429-10778695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
196, 9
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chr1:72304513-72304257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chr1:81913290-81913023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
139-409
               

               
Cow position:
               
chr1:83072301-83072576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
139-411
               

               
Cow position:
               
chr1:6305007-6304740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
139-411
               

               
Cow position:
               
chr1:50931118-50930844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
139-411
               

               
Cow position:
               
chr1:59518778-59519049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
139-411
               

               
Cow position:
               
chr1:85162686-85162412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
139-412
               

               
Cow position:
               
chr1:73960563-73960836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 118
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chr1:24133195-24132927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 9
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chr1:70828761-70829039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chr1:91023610-91023330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 166
               

               
Conread position:
               
139-415
               

               
Cow position:
               
chr1:41056541-41056816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
139-415
               

               
Cow position:
               
chr1:61884777-61885050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
139-415
               

               
Cow position:
               
chr1:86110873-86110606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
139-419
               

               
Cow position:
               
chr1:64804246-64803961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
139-439
               

               
Cow position:
               
chr1:84240753-84241045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
206, 124
               

               
Conread position:
               
139-447
               

               
Cow position:
               
chr1:36874872-36875196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
140-425
               

               
Cow position:
               
chr1:90976228-90975938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
9, 110
               

               
Conread position:
               
142-413
               

               
Cow position:
               
chr1:33331222-33330958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
5, 42
               

               
Conread position:
               
143-395
               

               
Cow position:
               
chr1:44125782-44125519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
143-399
               

               
Cow position:
               
chr1:98594432-98594688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
143-404
               

               
Cow position:
               
chr1:78838663-78838923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 73
               

               
Conread position:
               
143-424
               

               
Cow position:
               
chr1:92997032-92996743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
143-427
               

               
Cow position:
               
chr1:34300687-34300403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 112
               

               
Conread position:
               
143-483
               

               
Cow position:
               
chr1:89342130-89341779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 274
               

               
Conread position:
               
144-245
               

               
Cow position:
               
chr1:50907528-50907429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
144-327
               

               
Cow position:
               
chr1:20544161-20544344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
144-375
               

               
Cow position:
               
chr1:48444328-48444095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
185, 104
               

               
Conread position:
               
144-380
               

               
Cow position:
               
chr1:56634963-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
144-387
               

               
Cow position:
               
chr1:53425040-53425288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
144-389
               

               
Cow position:
               
chr1:19482209-19481969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
191, 48
               

               
Conread position:
               
144-395
               

               
Cow position:
               
chr1:19465923-19466170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
186, 17
               

               
Conread position:
               
144-419
               

               
Cow position:
               
chr1:6077764-6078036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
144-426
               

               
Cow position:
               
chr1:33207005-33206731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
182, 73
               

               
Conread position:
               
145-265
               

               
Cow position:
               
chr1:102113238-102113118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-273
               

               
Cow position:
               
chr1:31960092-31960222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
145-295
               

               
Cow position:
               
chr1:94404079-94404229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-296
               

               
Cow position:
               
chr1:12596037-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
145-308
               

               
Cow position:
               
chr1:80869982-80870143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
145-310
               

               
Cow position:
               
chr1:47008898-47009063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr1:57264129-57263959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
145-315
               

               
Cow position:
               
chr1:81470999-81471168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
145-322
               

               
Cow position:
               
chr1:3035126-3034957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
145-324
               

               
Cow position:
               
chr1:99039486-99039311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
145-326
               

               
Cow position:
               
chr1:45535572-45535753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-326
               

               
Cow position:
               
chr1:54199517-54199333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
145-327
               

               
Cow position:
               
chr1:98563030-98563209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
145-330
               

               
Cow position:
               
chr1:99136564-99136380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
145-333
               

               
Cow position:
               
chr1:24413310-24413502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 176
               

               
Conread position:
               
145-333
               

               
Cow position:
               
chr1:82443590-82443402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
145-333
               

               
Cow position:
               
chr1:89508423-89508602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
145-350
               

               
Cow position:
               
chr1:79278580-79278373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
182, 124
               

               
Conread position:
               
145-351
               

               
Cow position:
               
chr1:42398330-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
145-355
               

               
Cow position:
               
chr1:6788419-6788204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
145-363
               

               
Cow position:
               
chr1:70026477-70026258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
165, 100
               

               
Conread position:
               
145-368
               

               
Cow position:
               
chr1:5023889-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
190, 73
               

               
Conread position:
               
145-369
               

               
Cow position:
               
chr1:90640895-90641121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
145-372
               

               
Cow position:
               
chr1:26729591-26729809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
145-375
               

               
Cow position:
               
chr1:43703274-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
95, 112
               

               
Conread position:
               
145-375
               

               
Cow position:
               
chr1:91800735-91800499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
100, 72
               

               
Conread position:
               
145-377
               

               
Cow position:
               
chr1:20384753-20384522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
188, 63
               

               
Conread position:
               
145-383
               

               
Cow position:
               
chr1:20204894-20205134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
145-383
               

               
Cow position:
               
chr1:64678568-64678802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
128, 51
               

               
Conread position:
               
145-386
               

               
Cow position:
               
chr1:7350409-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 92
               

               
Conread position:
               
145-386
               

               
Cow position:
               
chr1:81228473-81228224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
145-386
               

               
Cow position:
               
chr1:89230361-89230121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
118, 45
               

               
Conread position:
               
145-387
               

               
Cow position:
               
chr1:68862900-68863142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
145-387
               

               
Cow position:
               
chr1:81868859-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
123, 79
               

               
Conread position:
               
145-388
               

               
Cow position:
               
chr1:99614318-99614553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
145-389
               

               
Cow position:
               
chr1:97954592-97954355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
193, 49
               

               
Conread position:
               
145-390
               

               
Cow position:
               
chr1:8129100-8128855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
145-390
               

               
Cow position:
               
chr1:26702341-26702092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 174
               

               
Conread position:
               
145-390
               

               
Cow position:
               
chr1:70434870-70435111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
187, 73
               

               
Conread position:
               
145-393
               

               
Cow position:
               
chr1:101632472-101632220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
145-394
               

               
Cow position:
               
chr1:5135827-5135591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
145-395
               

               
Cow position:
               
chr1:22827034-22827277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
105, 72
               

               
Conread position:
               
145-395
               

               
Cow position:
               
chr1:31348574-31348318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
145-395
               

               
Cow position:
               
chr1:39225058-39224807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
145-395
               

               
Cow position:
               
chr1:40599910-40600157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
105, 87
               

               
Conread position:
               
145-395
               

               
Cow position:
               
chr1:54478191-54478448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
145-395
               

               
Cow position:
               
chr1:69539564-69539810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
190, 100
               

               
Conread position:
               
145-395
               

               
Cow position:
               
chr1:89349829-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
145-397
               

               
Cow position:
               
chr1:57575892-57575642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 86
               

               
Conread position:
               
145-398
               

               
Cow position:
               
chr1:4032492-4032754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
145-398
               

               
Cow position:
               
chr1:78809747-78809998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
185, 100
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:24534387-24534134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
189, 100
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:34159701-34159959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:39418255-39417992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 233
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:48105567-48105313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 148
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:67821343-67821098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
181, 7
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:90621644-90621382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:94261409-94261658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:95176806-95177060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:95499625-95499372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
190, 16
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:102349888-102349629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
28, 243
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr1:102784830-102785076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
145-400
               

               
Cow position:
               
chr1:46218448-46218697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
145-401
               

               
Cow position:
               
chr1:60281237-60281499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
145-406
               

               
Cow position:
               
chr1:72011943-72011683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
145-407
               

               
Cow position:
               
chr1:3923928-3923669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
190, 90
               

               
Conread position:
               
145-407
               

               
Cow position:
               
chr1:4291025-4291295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
145-407
               

               
Cow position:
               
chr1:5597331-5597080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
191, 51
               

               
Conread position:
               
145-407
               

               
Cow position:
               
chr1:69264682-69264939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 48
               

               
Conread position:
               
145-407
               

               
Cow position:
               
chr1:78810906-78811170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 72
               

               
Conread position:
               
145-407
               

               
Cow position:
               
chr1:82936719-82936466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 51
               

               
Conread position:
               
145-408
               

               
Cow position:
               
chr1:61005695-61005431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
145-409
               

               
Cow position:
               
chr1:19516537-19516262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 144
               

               
Conread position:
               
145-409
               

               
Cow position:
               
chr1:25383529-25383803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 149
               

               
Conread position:
               
145-409
               

               
Cow position:
               
chr1:65318442-65318711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
145-409
               

               
Cow position:
               
chr1:71079089-71078828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 21
               

               
Conread position:
               
145-409
               

               
Cow position:
               
chr1:101713988-101714250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
145-410
               

               
Cow position:
               
chr1:1991554-1991292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
145-410
               

               
Cow position:
               
chr1:20667875-20667609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 44
               

               
Conread position:
               
145-410
               

               
Cow position:
               
chr1:43505391-43505663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 100
               

               
Conread position:
               
145-410
               

               
Cow position:
               
chr1:52039503-52039770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 66
               

               
Conread position:
               
145-410
               

               
Cow position:
               
chr1:91066286-91066018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
117, 102
               

               
Conread position:
               
145-410
               

               
Cow position:
               
chr1:98461161-98461418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 16
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:11729048-11729310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
192, 103
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:41047433-41047167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:48580997-48581266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:49433395-49433127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:52956120-52956384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
95, 186
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:53520774-53521050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:53622826-53623087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:53671872-53671615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:57900872-57900589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
152, 52
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:68817932-68817664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:75744727-75745001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 97
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:82337914-82337643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 173
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:84239246-84238988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
93, 168
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:89448764-89449036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:98551583-98551854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 237
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:197137-196870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 60
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:3167202-3166937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
186, 73
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:13637806-13637529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:42175591-42175864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 103
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:47886622-47886344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 168
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:55705383-55705108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 103
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:62964145-62964404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
190, 44
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:84812066-84811803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:87197694-87197956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 51
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:93499493-93499755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 58
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr1:96136354-96136601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr1:1877895-1878159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr1:33719984-33720236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr1:53458563-53458836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr1:61564663-61564917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
119, 137
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr1:68855037-68855302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr1:85550211-85549939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
185, 110
               

               
Conread position:
               
145-415
               

               
Cow position:
               
chr1:86682696-86682429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
145-416
               

               
Cow position:
               
chr1:51445746-51446026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
145-417
               

               
Cow position:
               
chr1:61742101-61741827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 44
               

               
Conread position:
               
145-419
               

               
Cow position:
               
chr1:68763815-68763544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
243, 30
               

               
Conread position:
               
145-420
               

               
Cow position:
               
chr1:53308522-53308250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
145-420
               

               
Cow position:
               
chr1:54258430-54258712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
145-421
               

               
Cow position:
               
chr1:21460731-21461014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 153
               

               
Conread position:
               
145-421
               

               
Cow position:
               
chr1:77462227-77462495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
77, 83
               

               
Conread position:
               
145-423
               

               
Cow position:
               
chr1:31608030-31607742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 184
               

               
Conread position:
               
145-431
               

               
Cow position:
               
chr1:89742130-89741841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
145-447
               

               
Cow position:
               
chr1:47233612-47233308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 103
               

               
Conread position:
               
145-447
               

               
Cow position:
               
chr1:77880869-77880560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
104, 90
               

               
Conread position:
               
145-479
               

               
Cow position:
               
chr1:18780467-18780128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
145-480
               

               
Cow position:
               
chr1:39069088-39068737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 103
               

               
Conread position:
               
145-482
               

               
Cow position:
               
chr1:67305374-67305032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
145-483
               

               
Cow position:
               
chr1:52994894-52995231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 33
               

               
Conread position:
               
145-483
               

               
Cow position:
               
chr1:57297340-57297684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 226
               

               
Conread position:
               
145-483
               

               
Cow position:
               
chr1:68253458-68253810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
146-393
               

               
Cow position:
               
chr1:93810297-93810546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
146-396
               

               
Cow position:
               
chr1:42869068-42868820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
146-398
               

               
Cow position:
               
chr1:8489-8737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
146-407
               

               
Cow position:
               
chr1:74956154-74955892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
26, 173
               

               
Conread position:
               
146-410
               

               
Cow position:
               
chr1:24581451-24581708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
189, 50
               

               
Conread position:
               
146-411
               

               
Cow position:
               
chr1:89381142-89381410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 126
               

               
Conread position:
               
146-411
               

               
Cow position:
               
chr1:101822636-101822380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
146-418
               

               
Cow position:
               
chr1:22728919-22729198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
146-418
               

               
Cow position:
               
chr1:81569163-81568886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 89
               

               
Conread position:
               
147-416
               

               
Cow position:
               
chr1:88913187-88913459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
147-427
               

               
Cow position:
               
chr1:68276279-68276560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
148-300
               

               
Cow position:
               
chr1:77099679-77099527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
148-332
               

               
Cow position:
               
chr1:63390904-63390715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
148-333
               

               
Cow position:
               
chr1:85301288-85301470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
148-355
               

               
Cow position:
               
chr1:91816900-91816692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
148-355
               

               
Cow position:
               
chr1:96478562-96478779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
148-381
               

               
Cow position:
               
chr1:16855821-16855594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
182, 38
               

               
Conread position:
               
148-381
               

               
Cow position:
               
chr1:62291821-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
186, 97
               

               
Conread position:
               
148-385
               

               
Cow position:
               
chr1:3720564-3720335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
187, 100
               

               
Conread position:
               
148-387
               

               
Cow position:
               
chr1:12978550-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
148-389
               

               
Cow position:
               
chr1:64572383-64572628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
148-393
               

               
Cow position:
               
chr1:36932027-36932271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
148-394
               

               
Cow position:
               
chr1:63434936-63434688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
148-394
               

               
Cow position:
               
chr1:71045624-71045863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
148-395
               

               
Cow position:
               
chr1:14206286-14206034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 172
               

               
Conread position:
               
148-395
               

               
Cow position:
               
chr1:75933142-75933385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
118, 141
               

               
Conread position:
               
148-395
               

               
Cow position:
               
chr1:96472315-96472549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
148-397
               

               
Cow position:
               
chr1:49795876-49796113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
189, 30
               

               
Conread position:
               
148-398
               

               
Cow position:
               
chr1:22192633-22192891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
148-399
               

               
Cow position:
               
chr1:55429086-55428833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
148-401
               

               
Cow position:
               
chr1:24542712-24542444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
148-405
               

               
Cow position:
               
chr1:42874077-42873821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
115, 48
               

               
Conread position:
               
148-407
               

               
Cow position:
               
chr1:42545917-42545648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
148-407
               

               
Cow position:
               
chr1:97611783-97611526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr1:10632918-10633180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
187, 84
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr1:56225336-56225602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr1:61391919-61391658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
97, 168
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr1:64302378-64302110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr1:89510052-89509789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr1:99642496-99642238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
187, 88
               

               
Conread position:
               
148-410
               

               
Cow position:
               
chr1:42887395-42887143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
189, 54
               

               
Conread position:
               
148-410
               

               
Cow position:
               
chr1:54206949-54206684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
104, 238
               

               
Conread position:
               
148-410
               

               
Cow position:
               
chr1:101860619-101860349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
112, 85
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr1:6941335-6941604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr1:6958748-6959017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr1:34686064-34686309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
187, 29
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr1:34771634-34771368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
187, 76
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr1:55357416-55357161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr1:96081354-96081613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr1:100761949-100762212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
182, 13
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr1:1956458-1956196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 48
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr1:1981244-1980973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 42
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr1:33409758-33409487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
148-417
               

               
Cow position:
               
chr1:7971291-7971553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
148-417
               

               
Cow position:
               
chr1:102291281-102291020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
94, 188
               

               
Conread position:
               
148-425
               

               
Cow position:
               
chr1:57880919-57880635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
148-428
               

               
Cow position:
               
chr1:86578820-86579115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
148-450
               

               
Cow position:
               
chr1:69127296-69126994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
148-483
               

               
Cow position:
               
chr1:71253683-71253358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 106
               

               
Conread position:
               
149-326
               

               
Cow position:
               
chr1:32341334-32341163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
149-360
               

               
Cow position:
               
chr1:98310936-98311156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
149-389
               

               
Cow position:
               
chr1:38401665-38401912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
96, 175
               

               
Conread position:
               
149-399
               

               
Cow position:
               
chr1:8349446-8349201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
149-399
               

               
Cow position:
               
chr1:96277184-96276928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
57, 178
               

               
Conread position:
               
149-410
               

               
Cow position:
               
chr1:45555235-45555499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 231
               

               
Conread position:
               
149-410
               

               
Cow position:
               
chr1:74822326-74822586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
186, 45
               

               
Conread position:
               
149-410
               

               
Cow position:
               
chr1:98030789-98031056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
149-411
               

               
Cow position:
               
chr1:19885259-19885516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
117, 26
               

               
Conread position:
               
149-412
               

               
Cow position:
               
chr1:31272570-31272307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 75
               

               
Conread position:
               
149-413
               

               
Cow position:
               
chr1:51394292-51394554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
149-415
               

               
Cow position:
               
chr1:41115844-41115577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 99
               

               
Conread position:
               
149-415
               

               
Cow position:
               
chr1:93528565-93528840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 120
               

               
Conread position:
               
149-415
               

               
Cow position:
               
chr1:93554714-93554975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
149-422
               

               
Cow position:
               
chr1:52496652-52496916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
149-422
               

               
Cow position:
               
chr1:79165215-79164939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 178
               

               
Conread position:
               
149-450
               

               
Cow position:
               
chr1:3882594-3882284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 73
               

               
Conread position:
               
149-479
               

               
Cow position:
               
chr1:83747817-83748140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
150-333
               

               
Cow position:
               
chr1:93228398-93228578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
150-395
               

               
Cow position:
               
chr1:100706001-100706245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
150-410
               

               
Cow position:
               
chr1:72035054-72034787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
150-414
               

               
Cow position:
               
chr1:66898626-66898359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
150-427
               

               
Cow position:
               
chr1:24778113-24777842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
185, 11
               

               
Conread position:
               
150-427
               

               
Cow position:
               
chr1:39510177-39509907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 44
               

               
Conread position:
               
151-399
               

               
Cow position:
               
chr1:97090200-97090449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
151-403
               

               
Cow position:
               
chr1:100800229-100800478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 86
               

               
Conread position:
               
151-408
               

               
Cow position:
               
chr1:21787203-21787466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
104, 249
               

               
Conread position:
               
151-410
               

               
Cow position:
               
chr1:15547341-15547604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
18, 107
               

               
Conread position:
               
151-410
               

               
Cow position:
               
chr1:100569024-100569290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
151-411
               

               
Cow position:
               
chr1:86073467-86073731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
151-413
               

               
Cow position:
               
chr1:101834697-101834953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
151-428
               

               
Cow position:
               
chr1:5539404-5539124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
152-363
               

               
Cow position:
               
chr1:68951501-68951712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
183, 96
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr1:75141876-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
152-406
               

               
Cow position:
               
chr1:100551842-100552105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
152-411
               

               
Cow position:
               
chr1:92369606-92369869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 219
               

               
Conread position:
               
152-413
               

               
Cow position:
               
chr1:51417646-51417908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
163, 90
               

               
Conread position:
               
154-411
               

               
Cow position:
               
chr1:48730950-48730698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 54
               

               
Conread position:
               
155-380
               

               
Cow position:
               
chr1:81563613-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
155-394
               

               
Cow position:
               
chr1:77720358-77720131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
179, 95
               

               
Conread position:
               
155-399
               

               
Cow position:
               
chr1:72813489-72813739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
15, 129
               

               
Conread position:
               
155-411
               

               
Cow position:
               
chr1:53374307-53374566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
155-413
               

               
Cow position:
               
chr1:97755393-97755637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
86, 182
               

               
Conread position:
               
155-479
               

               
Cow position:
               
chr1:3790189-3789853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 88
               

               
Conread position:
               
158-308
               

               
Cow position:
               
chr1:1403599-1403453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
158-389
               

               
Cow position:
               
chr1:724617-724853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
158-398
               

               
Cow position:
               
chr1:100393281-100393041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
148, 36
               

               
Conread position:
               
158-399
               

               
Cow position:
               
chr1:3352814-3352577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
177, 62
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chr1:91875029-91874784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
158-411
               

               
Cow position:
               
chr1:43311896-43311636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
158-413
               

               
Cow position:
               
chr1:20104148-20104402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
112, 80
               

               
Conread position:
               
158-413
               

               
Cow position:
               
chr1:79640410-79640153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
158-415
               

               
Cow position:
               
chr1:20950601-20950853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
160, 90
               

               
Conread position:
               
159-383
               

               
Cow position:
               
chr1:92433881-92434106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
176, 96
               

               
Conread position:
               
159-389
               

               
Cow position:
               
chr1:80899998-80900232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 209
               

               
Conread position:
               
160-397
               

               
Cow position:
               
chr1:42482084-42482318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
160-471
               

               
Cow position:
               
chr1:71399164-71399483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
161-309
               

               
Cow position:
               
chr1:9437426-9437278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 142
               

               
Conread position:
               
161-386
               

               
Cow position:
               
chr1:100450301-100450066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 163
               

               
Conread position:
               
161-395
               

               
Cow position:
               
chr1:20099254-20099484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
161-397
               

               
Cow position:
               
chr1:42541478-42541719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
161-411
               

               
Cow position:
               
chr1:261596-261337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
161-411
               

               
Cow position:
               
chr1:92197347-92197588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
161-413
               

               
Cow position:
               
chr1:45288990-45288736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
161-417
               

               
Cow position:
               
chr1:89388226-89388489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
161-436
               

               
Cow position:
               
chr1:26934378-26934115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
174, 35
               

               
Conread position:
               
162-384
               

               
Cow position:
               
chr1:27145766-27145545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
167, 72
               

               
Conread position:
               
162-394
               

               
Cow position:
               
chr1:17196746-17196509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
162-399
               

               
Cow position:
               
chr1:87072581-87072818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
162-411
               

               
Cow position:
               
chr1:31934395-31934642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
162-413
               

               
Cow position:
               
chr1:58754911-58754661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
172, 26
               

               
Conread position:
               
162-413
               

               
Cow position:
               
chr1:102266384-102266134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
173, 62
               

               
Conread position:
               
162-416
               

               
Cow position:
               
chr1:81290391-81290645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 58
               

               
Conread position:
               
162-417
               

               
Cow position:
               
chr1:22525760-22526020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
162-421
               

               
Cow position:
               
chr1:6826405-6826156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
175, 56
               

               
Conread position:
               
163-402
               

               
Cow position:
               
chr1:52052835-52052591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
163-411
               

               
Cow position:
               
chr1:43352772-43352521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
164-425
               

               
Cow position:
               
chr1:98511813-98512075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 85
               

               
Conread position:
               
166-307
               

               
Cow position:
               
chr1:22466623-22466481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
166-350
               

               
Cow position:
               
chr1:91370121-91369935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
169, 106
               

               
Conread position:
               
166-388
               

               
Cow position:
               
chr1:69551596-69551367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chr1:56225681-56225907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
166-408
               

               
Cow position:
               
chr1:68845269-68845040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
166-410
               

               
Cow position:
               
chr1:5579942-5580189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 154
               

               
Conread position:
               
166-410
               

               
Cow position:
               
chr1:41138244-41138009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
171, 82
               

               
Conread position:
               
166-410
               

               
Cow position:
               
chr1:78794337-78794097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
167, 82
               

               
Conread position:
               
166-411
               

               
Cow position:
               
chr1:98059937-98060197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
166-413
               

               
Cow position:
               
chr1:56618763-56618520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
166-417
               

               
Cow position:
               
chr1:10716390-10716637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
166-417
               

               
Cow position:
               
chr1:81477981-81477727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
166-421
               

               
Cow position:
               
chr1:23999033-23998787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
166-423
               

               
Cow position:
               
chr1:7023008-7023268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
166-480
               

               
Cow position:
               
chr1:45553356-45553038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 82
               

               
Conread position:
               
167-390
               

               
Cow position:
               
chr1:61543029-61542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
168, 80
               

               
Conread position:
               
167-395
               

               
Cow position:
               
chr1:15333773-15334010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 158
               

               
Conread position:
               
167-397
               

               
Cow position:
               
chr1:65028418-65028653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 221
               

               
Conread position:
               
167-398
               

               
Cow position:
               
chr1:52435163-52435394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
168, 40
               

               
Conread position:
               
167-402
               

               
Cow position:
               
chr1:87936788-87937023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
168, 78
               

               
Conread position:
               
167-408
               

               
Cow position:
               
chr1:69695103-69694862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
127, 78
               

               
Conread position:
               
167-410
               

               
Cow position:
               
chr1:14309146-14308898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
167-411
               

               
Cow position:
               
chr1:86340582-86340333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
167-413
               

               
Cow position:
               
chr1:32001432-32001184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 155
               

               
Conread position:
               
167-413
               

               
Cow position:
               
chr1:54156843-54156598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
167-413
               

               
Cow position:
               
chr1:80422169-80422409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
170, 81
               

               
Conread position:
               
167-483
               

               
Cow position:
               
chr1:98360509-98360201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 67
               

               
Conread position:
               
168-392
               

               
Cow position:
               
chr1:43822290-43822515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
168-393
               

               
Cow position:
               
chr1:43855191-43855412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
168-408
               

               
Cow position:
               
chr1:67688691-67688451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
168-411
               

               
Cow position:
               
chr1:92989479-92989725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 87
               

               
Conread position:
               
168-419
               

               
Cow position:
               
chr1:27463021-27463275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
168-421
               

               
Cow position:
               
chr1:97231850-97232109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
168-425
               

               
Cow position:
               
chr1:72356248-72356504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
167, 132
               

               
Conread position:
               
169-411
               

               
Cow position:
               
chr1:78697878-78697636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
170-387
               

               
Cow position:
               
chr1:6752336-6752120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 24
               

               
Conread position:
               
171-399
               

               
Cow position:
               
chr1:41252508-41252287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
171-411
               

               
Cow position:
               
chr1:77232674-77232443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 8
               

               
Conread position:
               
175-399
               

               
Cow position:
               
chr1:24406997-24406774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
155, 80
               

               
Conread position:
               
175-415
               

               
Cow position:
               
chr1:61012206-61012452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
83, 233
               

               
Conread position:
               
178-383
               

               
Cow position:
               
chr1:19227155-19226950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
154, 46
               

               
Conread position:
               
178-398
               

               
Cow position:
               
chr1:51044406-51044187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 70
               

               
Conread position:
               
178-399
               

               
Cow position:
               
chr1:28176909-28177127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
208, 95
               

               
Conread position:
               
178-410
               

               
Cow position:
               
chr1:78066642-78066404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
178-411
               

               
Cow position:
               
chr1:82513456-82513221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 206
               

               
Conread position:
               
178-415
               

               
Cow position:
               
chr1:22823805-22824045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
178-483
               

               
Cow position:
               
chr1:37886910-37886611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
179-392
               

               
Cow position:
               
chr1:68827004-68826796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
179-411
               

               
Cow position:
               
chr1:72105312-72105541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
158, 84
               

               
Conread position:
               
179-415
               

               
Cow position:
               
chr1:34856731-34856489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
179-434
               

               
Cow position:
               
chr1:73756345-73756093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 76
               

               
Conread position:
               
180-395
               

               
Cow position:
               
chr1:26427960-26427742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
183-390
               

               
Cow position:
               
chr1:30189051-30189266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
183-399
               

               
Cow position:
               
chr1:30418133-30417925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
183-417
               

               
Cow position:
               
chr1:45670543-45670773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
154, 41
               

               
Conread position:
               
184-398
               

               
Cow position:
               
chr1:102306238-102306024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
185-323
               

               
Cow position:
               
chr1:58439095-58438956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
185-413
               

               
Cow position:
               
chr1:90904847-90904621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
150, 63
               

               
Conread position:
               
185-416
               

               
Cow position:
               
chr1:46030866-46031098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
188-398
               

               
Cow position:
               
chr1:4581417-4581209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
147, 32
               

               
Conread position:
               
188-402
               

               
Cow position:
               
chr1:82880554-82880770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
188-410
               

               
Cow position:
               
chr1:71796404-71796177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 36
               

               
Conread position:
               
190-402
               

               
Cow position:
               
chr1:5155305-5155093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
194-385
               

               
Cow position:
               
chr1:39427086-39426896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
141, 54
               

               
Conread position:
               
194-399
               

               
Cow position:
               
chr1:48769719-48769926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
194-410
               

               
Cow position:
               
chr1:37124041-37124267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
194-411
               

               
Cow position:
               
chr1:47790750-47790531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 158
               

               
Conread position:
               
196-332
               

               
Cow position:
               
chr1:41695517-41695654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
196-410
               

               
Cow position:
               
chr1:96947799-96947585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
139, 42
               

               
Conread position:
               
197-394
               

               
Cow position:
               
chr1:49825151-49824946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
197-394
               

               
Cow position:
               
chr1:99793462-99793667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
197-398
               

               
Cow position:
               
chr1:25281742-25281535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
197-399
               

               
Cow position:
               
chr1:21954313-21954101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 183
               

               
Conread position:
               
197-411
               

               
Cow position:
               
chr1:95153138-95153357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
197-413
               

               
Cow position:
               
chr1:80841571-80841783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
142, 51
               

               
Conread position:
               
197-427
               

               
Cow position:
               
chr1:65103538-65103767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr1:50991853-50992131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 36
               

               
Conread position:
               
198-355
               

               
Cow position:
               
chr1:61560807-61560644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
198-357
               

               
Cow position:
               
chr1:68217444-68217285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 137
               

               
Conread position:
               
198-411
               

               
Cow position:
               
chr1:79135199-79135413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
199-410
               

               
Cow position:
               
chr1:48214241-48214024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
199-417
               

               
Cow position:
               
chr1:100474152-100474375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
199-483
               

               
Cow position:
               
chr1:77892063-77892343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
138, 25
               

               
Conread position:
               
200-388
               

               
Cow position:
               
chr1:101158838-101159027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
200-389
               

               
Cow position:
               
chr1:52467223-52467416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
200-408
               

               
Cow position:
               
chr1:98583679-98583885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
200-409
               

               
Cow position:
               
chr1:27881534-27881739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
201-390
               

               
Cow position:
               
chr1:37707051-37706863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 117
               

               
Conread position:
               
201-410
               

               
Cow position:
               
chr1:62036726-62036937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
201-413
               

               
Cow position:
               
chr1:78096847-78097062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
201-483
               

               
Cow position:
               
chr1:8347046-8347328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
134, 53
               

               
Conread position:
               
202-398
               

               
Cow position:
               
chr1:85339322-85339506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
202-474
               

               
Cow position:
               
chr1:68672676-68672400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
202-480
               

               
Cow position:
               
chr1:81580093-81580381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
202-483
               

               
Cow position:
               
chr1:98575969-98576253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
203-399
               

               
Cow position:
               
chr1:35671466-35671662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
203-411
               

               
Cow position:
               
chr1:79003898-79004106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
206-407
               

               
Cow position:
               
chr1:89158202-89157994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
207-411
               

               
Cow position:
               
chr1:92684763-92684561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
207-419
               

               
Cow position:
               
chr1:92032673-92032461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
207-426
               

               
Cow position:
               
chr1:186348-186131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
46, 132
               

               
Conread position:
               
208-368
               

               
Cow position:
               
chr1:43286273-43286438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
208-408
               

               
Cow position:
               
chr1:58036948-58037150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
209-396
               

               
Cow position:
               
chr1:45223510-45223701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
210-421
               

               
Cow position:
               
chr1:78068133-78067925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
211-384
               

               
Cow position:
               
chr1:27380393-27380564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 51
               

               
Conread position:
               
211-410
               

               
Cow position:
               
chr1:46143530-46143329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 112
               

               
Conread position:
               
213-413
               

               
Cow position:
               
chr1:54267999-54267804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
122, 26
               

               
Conread position:
               
213-421
               

               
Cow position:
               
chr1:95072264-95072477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
213-435
               

               
Cow position:
               
chr1:86912373-86912599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
214-389
               

               
Cow position:
               
chr1:30136419-30136241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
214-395
               

               
Cow position:
               
chr1:92590131-92590310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
214-415
               

               
Cow position:
               
chr1:3965775-3965974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
216-413
               

               
Cow position:
               
chr1:48206598-48206399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
217-398
               

               
Cow position:
               
chr1:101507296-101507481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
217-411
               

               
Cow position:
               
chr1:88359819-88360013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
118, 31
               

               
Conread position:
               
217-416
               

               
Cow position:
               
chr1:48618301-48618104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
217-423
               

               
Cow position:
               
chr1:80584369-80584574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
218-352
               

               
Cow position:
               
chr1:80904706-80904843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
218-395
               

               
Cow position:
               
chr1:52662235-52662054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
218-407
               

               
Cow position:
               
chr1:3942271-3942085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
219-475
               

               
Cow position:
               
chr1:83459478-83459232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
112, 23
               

               
Conread position:
               
219-478
               

               
Cow position:
               
chr1:83463533-83463782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
118, 36
               

               
Conread position:
               
220-406
               

               
Cow position:
               
chr1:64113853-64113661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 179
               

               
Conread position:
               
220-406
               

               
Cow position:
               
chr1:95974337-95974531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
220-409
               

               
Cow position:
               
chr1:79630973-79630784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 90
               

               
Conread position:
               
220-415
               

               
Cow position:
               
chr1:79146880-79146682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
221-410
               

               
Cow position:
               
chr1:84768937-84768745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
109, 40
               

               
Conread position:
               
222-424
               

               
Cow position:
               
chr1:52912954-52912750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
222-444
               

               
Cow position:
               
chr1:60901017-60901241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
224-411
               

               
Cow position:
               
chr1:81481439-81481247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
224-431
               

               
Cow position:
               
chr1:76658134-76657912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
225-409
               

               
Cow position:
               
chr1:69482005-69481817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 165
               

               
Conread position:
               
226-417
               

               
Cow position:
               
chr1:49153263-49153457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 140
               

               
Conread position:
               
229-419
               

               
Cow position:
               
chr1:500123-500318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
229-427
               

               
Cow position:
               
chr1:816461-816261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
232-389
               

               
Cow position:
               
chr1:97833663-97833820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
233-411
               

               
Cow position:
               
chr1:57090930-57091113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
233-411
               

               
Cow position:
               
chr1:102529902-102529725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
238-411
               

               
Cow position:
               
chr1:62997756-62997931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
239-413
               

               
Cow position:
               
chr1:8287671-8287494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
245-415
               

               
Cow position:
               
chr1:89158730-89158567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
245-416
               

               
Cow position:
               
chr1:67654353-67654179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
248-378
               

               
Cow position:
               
chr1:60466195-60466331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
248-415
               

               
Cow position:
               
chr1:62034860-62034692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 98
               

               
Conread position:
               
248-415
               

               
Cow position:
               
chr1:67529023-67529194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
249-419
               

               
Cow position:
               
chr1:82556439-82556275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
250-394
               

               
Cow position:
               
chr1:83618639-83618486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
250-411
               

               
Cow position:
               
chr1:41027042-41027210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
254-413
               

               
Cow position:
               
chr1:6731155-6731315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
254-415
               

               
Cow position:
               
chr1:83025190-83025029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 142
               

               
Conread position:
               
255-483
               

               
Cow position:
               
chr1:808846-808600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
256-389
               

               
Cow position:
               
chr1:27959574-27959438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 67
               

               
Conread position:
               
256-392
               

               
Cow position:
               
chr1:5006138-5006277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
256-410
               

               
Cow position:
               
chr1:55753239-55753082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
256-412
               

               
Cow position:
               
chr1:36578494-36578653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
256-415
               

               
Cow position:
               
chr1:99221375-99221217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
256-481
               

               
Cow position:
               
chr1:95683402-95683184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 143
               

               
Conread position:
               
257-394
               

               
Cow position:
               
chr1:45575911-45576051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
257-395
               

               
Cow position:
               
chr1:42537346-42537203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
257-411
               

               
Cow position:
               
chr1:98911985-98912138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
136, 69
               

               
Conread position:
               
257-421
               

               
Cow position:
               
chr1:71916142-71915975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
258-399
               

               
Cow position:
               
chr1:54157272-54157419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
259-389
               

               
Cow position:
               
chr1:40935788-40935653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
260-410
               

               
Cow position:
               
chr1:24530482-24530635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
260-415
               

               
Cow position:
               
chr1:15102869-15103022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 35
               

               
Conread position:
               
261-418
               

               
Cow position:
               
chr1:45315655-45315496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
74, 143
               

               
Conread position:
               
263-375
               

               
Cow position:
               
chr1:80442726-80442842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 65
               

               
Conread position:
               
272-389
               

               
Cow position:
               
chr1:52429668-52429547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
272-408
               

               
Cow position:
               
chr1:68688575-68688717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
272-417
               

               
Cow position:
               
chr1:759426-759277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
272-483
               

               
Cow position:
               
chr1:31855255-31855053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
273-399
               

               
Cow position:
               
chr1:61011174-61011304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
273-399
               

               
Cow position:
               
chr1:66752636-66752506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
273-411
               

               
Cow position:
               
chr1:97750626-97750484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr1:8670766-8670909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
273-415
               

               
Cow position:
               
chr1:49980703-49980846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 130
               

               
Conread position:
               
273-474
               

               
Cow position:
               
chr1:45478866-45478675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
273-480
               

               
Cow position:
               
chr1:54732492-54732282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 92
               

               
Conread position:
               
273-482
               

               
Cow position:
               
chr1:19304565-19304775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 150
               

               
Conread position:
               
274-407
               

               
Cow position:
               
chr1:93590592-93590455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
275-389
               

               
Cow position:
               
chr1:99605192-99605074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
275-409
               

               
Cow position:
               
chr1:100573633-100573494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
275-410
               

               
Cow position:
               
chr1:40212337-40212210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
276-408
               

               
Cow position:
               
chr1:101439486-101439354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
276-411
               

               
Cow position:
               
chr1:100852705-100852844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
277-413
               

               
Cow position:
               
chr1:19962049-19962185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 125
               

               
Conread position:
               
277-482
               

               
Cow position:
               
chr1:83783933-83783724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 143
               

               
Conread position:
               
282-483
               

               
Cow position:
               
chr1:65909513-65909720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
284-399
               

               
Cow position:
               
chr1:43499292-43499174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 96
               

               
Conread position:
               
284-478
               

               
Cow position:
               
chr1:53640719-53640919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
285-411
               

               
Cow position:
               
chr1:87220465-87220589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
285-423
               

               
Cow position:
               
chr1:44269096-44269235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
286-411
               

               
Cow position:
               
chr1:70483328-70483199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
286-417
               

               
Cow position:
               
chr1:71946078-71945943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
288-409
               

               
Cow position:
               
chr1:55685970-55685845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
290-399
               

               
Cow position:
               
chr1:71636315-71636201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
290-413
               

               
Cow position:
               
chr1:50585868-50585740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
291-399
               

               
Cow position:
               
chr1:84288414-84288526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
291-411
               

               
Cow position:
               
chr1:63460889-63461014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
291-421
               

               
Cow position:
               
chr1:46100829-46100695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
292-413
               

               
Cow position:
               
chr1:50329507-50329630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
293-415
               

               
Cow position:
               
chr1:42774924-42775047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
294-419
               

               
Cow position:
               
chr1:29671210-29671081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
299-430
               

               
Cow position:
               
chr1:3417374-3417509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
303-450
               

               
Cow position:
               
chr1:34318763-34318612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
307-483
               

               
Cow position:
               
chr1:76080834-76081013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 130
               

               
Conread position:
               
319-483
               

               
Cow position:
               
chr1:44986562-44986735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
353-483
               

               
Cow position:
               
chr1:61030833-61030961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               
Show alignments to all cow chromosomes.