Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-378 |
| Cow position: | chr1:82865429-82865038 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 79 |
| Conread position: | 1-437 |
| Cow position: | chr1:81371494-81371923 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 99 |
| Conread position: | 3-151 |
| Cow position: | chr1:22070453-22070307 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 3-151 |
| Cow position: | chr1:63133816-63133675 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 3-162 |
| Cow position: | chr1:76780253-76780417 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 3-212 |
| Cow position: | chr1:39244381-39244595 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 150, 199 |
| Conread position: | 3-227 |
| Cow position: | chr1:40161413-40161179 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 3-227 |
| Cow position: | chr1:40164439-40164205 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 3-228 |
| Cow position: | chr1:40222843-40223071 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 150, 36 |
| Conread position: | 3-301 |
| Cow position: | chr1:71331349-71331642 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 167, 65 |
| Conread position: | 3-301 |
| Cow position: | chr1:87914773-87915059 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 3-356 |
| Cow position: | chr1:33084802-33085162 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 150, 74 |
| Conread position: | 3-377 |
| Cow position: | chr1:42174390-42174780 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 233 |
| Conread position: | 3-412 |
| Cow position: | chr1:22495740-22495318 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 39 |
| Conread position: | 3-442 |
| Cow position: | chr1:72181998-72181578 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 67 |
| Conread position: | 3-446 |
| Cow position: | chr1:11323288-11323752 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 3-452 |
| Cow position: | chr1:77868343-77867911 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 207 |
| Conread position: | 3-461 |
| Cow position: | chr1:18223675-18224153 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 3-469 |
| Cow position: | chr1:30041923-30041445 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 75 |
| Conread position: | 3-470 |
| Cow position: | chr1:19439827-19440299 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 101 |
| Conread position: | 3-470 |
| Cow position: | chr1:23624353-23623870 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 69 |
| Conread position: | 4-446 |
| Cow position: | chr1:86615053-86614606 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 165 |
| Conread position: | 5-255 |
| Cow position: | chr1:74713645-74713394 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 6-151 |
| Cow position: | chr1:28680219-28680074 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 127, 27 |
| Conread position: | 6-470 |
| Cow position: | chr1:52206872-52206407 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 71 |
| Conread position: | 7-470 |
| Cow position: | chr1:1825971-1825496 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 86 |
| Conread position: | 9-138 |
| Cow position: | chr1:69061426-69061300 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 9-442 |
| Cow position: | chr1:92550957-92551391 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 19 |
| Conread position: | 10-162 |
| Cow position: | chr1:61241935-61241786 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 10-253 |
| Cow position: | chr1:84152689-84152441 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 151, 199 |
| Conread position: | 10-323 |
| Cow position: | chr1:102774832-102775151 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 151, 86 |
| Conread position: | 10-412 |
| Cow position: | chr1:45572682-45573085 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 145, 202 |
| Conread position: | 10-444 |
| Cow position: | chr1:76859418-76859848 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 103, 91 |
| Conread position: | 10-470 |
| Cow position: | chr1:15037515-15037048 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 12-216 |
| Cow position: | chr1:58495134-58495338 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 68 |
| Conread position: | 14-425 |
| Cow position: | chr1:29648232-29648643 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 14-436 |
| Cow position: | chr1:28567254-28567688 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 99 |
| Conread position: | 14-452 |
| Cow position: | chr1:22516734-22516281 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 299 |
| Conread position: | 14-452 |
| Cow position: | chr1:55202444-55202880 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 14-467 |
| Cow position: | chr1:64479789-64480257 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 14-470 |
| Cow position: | chr1:25118861-25119304 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 147 |
| Conread position: | 15-414 |
| Cow position: | chr1:54162619-54163038 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 220 |
| Conread position: | 16-306 |
| Cow position: | chr1:86365074-86364784 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 136, 204 |
| Conread position: | 16-413 |
| Cow position: | chr1:34892743-34892339 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 150 |
| Conread position: | 16-447 |
| Cow position: | chr1:21429810-21430275 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 305 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 22-437 |
| Cow position: | chr1:86325430-86325862 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 51 |
| Conread position: | 23-255 |
| Cow position: | chr1:70065980-70065743 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 26-408 |
| Cow position: | chr1:79384677-79385047 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 88, 71 |
| Conread position: | 26-469 |
| Cow position: | chr1:82406376-82406840 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 194 |
| Conread position: | 28-470 |
| Cow position: | chr1:57646841-57646395 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 192 |
| Conread position: | 29-289 |
| Cow position: | chr1:60260779-60260532 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 192, 43 |
| Conread position: | 29-452 |
| Cow position: | chr1:52774359-52774787 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 107 |
| Conread position: | 31-446 |
| Cow position: | chr1:65144325-65144721 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 289 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 36-465 |
| Cow position: | chr1:14560788-14561231 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 37-402 |
| Cow position: | chr1:31038787-31039144 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 41-419 |
| Cow position: | chr1:53410773-53411143 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 183, 73 |
| Conread position: | 43-421 |
| Cow position: | chr1:25885921-25886310 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 71 |
| Conread position: | 44-438 |
| Cow position: | chr1:29771598-29771981 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 45-451 |
| Cow position: | chr1:72803101-72803503 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 284, 41 |
| Conread position: | 50-317 |
| Cow position: | chr1:59613568-59613300 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 58-304 |
| Cow position: | chr1:34310998-34310742 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 159 |
| Conread position: | 61-431 |
| Cow position: | chr1:59910495-59910105 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 131 |
| Conread position: | 94-298 |
| Cow position: | chr1:9511996-9512206 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 184 |
| Conread position: | 96-470 |
| Cow position: | chr1:7233406-7233033 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 101-341 |
| Cow position: | chr1:37739508-37739750 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 101-351 |
| Cow position: | chr1:63314929-63314667 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 110-446 |
| Cow position: | chr1:29975510-29975857 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 115-465 |
| Cow position: | chr1:17291553-17291925 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 119-434 |
| Cow position: | chr1:51257100-51256788 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 160-470 |
| Cow position: | chr1:84255800-84255468 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 168-470 |
| Cow position: | chr1:68811142-68811425 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 281, 40 |
| Conread position: | 168-470 |
| Cow position: | chr1:89262335-89262642 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 174-454 |
| Cow position: | chr1:81913132-81913421 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 178-379 |
| Cow position: | chr1:89443463-89443670 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 186-450 |
| Cow position: | chr1:61241210-61240953 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 85, 160 |
| Conread position: | 193-431 |
| Cow position: | chr1:81319294-81319045 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 197-433 |
| Cow position: | chr1:62425391-62425631 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 84 |
| Conread position: | 197-470 |
| Cow position: | chr1:14528194-14528485 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 203-470 |
| Cow position: | chr1:70282927-70282656 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 205-470 |
| Cow position: | chr1:41056667-41056399 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 16 |
Show alignments to all cow chromosomes.