Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-199 |
| Cow position: | chr10:22859991-22860191 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 152, 113 |
| Conread position: | 1-205 |
| Cow position: | chr10:2267388-2267594 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 71 |
| Conread position: | 1-434 |
| Cow position: | chr10:67050859-67050458 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 170, 84 |
| Conread position: | 2-456 |
| Cow position: | chr10:48312906-48313353 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 84 |
| Conread position: | 3-162 |
| Cow position: | chr10:43060949-43061104 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 74, 51 |
| Conread position: | 3-205 |
| Cow position: | chr10:28566081-28566290 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 3-230 |
| Cow position: | chr10:15618608-15618838 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 3-269 |
| Cow position: | chr10:22455356-22455091 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 161, 108 |
| Conread position: | 3-363 |
| Cow position: | chr10:41395625-41395297 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 3-443 |
| Cow position: | chr10:69250674-69250241 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 7 |
| Conread position: | 3-446 |
| Cow position: | chr10:1352099-1351644 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 174 |
| Conread position: | 3-446 |
| Cow position: | chr10:11275820-11275375 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 76 |
| Conread position: | 3-452 |
| Cow position: | chr10:51778868-51779324 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 74 |
| Conread position: | 3-470 |
| Cow position: | chr10:22843853-22843376 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 235 |
| Conread position: | 4-421 |
| Cow position: | chr10:68203933-68204356 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 160, 73 |
| Conread position: | 4-470 |
| Cow position: | chr10:57404775-57405245 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 7 |
| Conread position: | 6-151 |
| Cow position: | chr10:3318025-3317880 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-451 |
| Cow position: | chr10:4994404-4994851 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 64 |
| Conread position: | 7-468 |
| Cow position: | chr10:12875652-12876095 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 92 |
| Conread position: | 9-387 |
| Cow position: | chr10:16669211-16669593 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 124, 69 |
| Conread position: | 14-363 |
| Cow position: | chr10:14392572-14392224 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 147, 29 |
| Conread position: | 14-425 |
| Cow position: | chr10:58827155-58827575 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 75 |
| Conread position: | 14-446 |
| Cow position: | chr10:28950223-28949812 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 15-470 |
| Cow position: | chr10:41637804-41637332 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 23-470 |
| Cow position: | chr10:58263157-58262715 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 96 |
| Conread position: | 26-301 |
| Cow position: | chr10:33605144-33605423 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 28-440 |
| Cow position: | chr10:24077502-24077942 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 76 |
| Conread position: | 32-207 |
| Cow position: | chr10:48193543-48193724 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 136, 17 |
| Conread position: | 32-387 |
| Cow position: | chr10:49772116-49771760 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 44-341 |
| Cow position: | chr10:66181890-66182192 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 78-418 |
| Cow position: | chr10:58937202-58937550 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 176, 29 |
| Conread position: | 93-446 |
| Cow position: | chr10:22905686-22906052 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 94 |
| Conread position: | 94-305 |
| Cow position: | chr10:52815313-52815092 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 94-414 |
| Cow position: | chr10:32066195-32065863 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 103-395 |
| Cow position: | chr10:6038272-6038575 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 107-470 |
| Cow position: | chr10:14787486-14787847 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 108-465 |
| Cow position: | chr10:25479161-25478799 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 160-428 |
| Cow position: | chr10:23506484-23506758 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 168-439 |
| Cow position: | chr10:49680033-49679761 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 168-470 |
| Cow position: | chr10:68979572-68979256 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 174-360 |
| Cow position: | chr10:50044656-50044851 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 174-452 |
| Cow position: | chr10:24786098-24785808 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 174-468 |
| Cow position: | chr10:21657416-21657111 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 252 |
| Conread position: | 174-471 |
| Cow position: | chr10:42454119-42453821 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 115, 28 |
| Conread position: | 176-447 |
| Cow position: | chr10:53057681-53057953 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 176-452 |
| Cow position: | chr10:65734932-65734651 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 198-446 |
| Cow position: | chr10:15618841-15619098 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 204-446 |
| Cow position: | chr10:65791799-65791551 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 6, 90 |
| Conread position: | 212-463 |
| Cow position: | chr10:64182405-64182142 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 221-438 |
| Cow position: | chr10:20569085-20568853 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 202 |
Show alignments to all cow chromosomes.