Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 2-434 |
| Cow position: | chr13:55406864-55406425 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 24 |
| Conread position: | 3-213 |
| Cow position: | chr13:38535184-38535398 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 150, 66 |
| Conread position: | 3-300 |
| Cow position: | chr13:8960177-8960475 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 218, 158 |
| Conread position: | 3-434 |
| Cow position: | chr13:1367811-1368267 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 238 |
| Conread position: | 3-469 |
| Cow position: | chr13:47591334-47590865 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 10 |
| Conread position: | 3-470 |
| Cow position: | chr13:6498400-6498870 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 332, 139 |
| Conread position: | 3-470 |
| Cow position: | chr13:37497930-37497482 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 63 |
| Conread position: | 3-470 |
| Cow position: | chr13:43384834-43384359 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 228 |
| Conread position: | 4-131 |
| Cow position: | chr13:46464620-46464746 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 4-210 |
| Cow position: | chr13:38362081-38362291 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 157, 66 |
| Conread position: | 5-442 |
| Cow position: | chr13:24404406-24404811 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 65 |
| Conread position: | 5-470 |
| Cow position: | chr13:45497454-45496986 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 269 |
| Conread position: | 6-449 |
| Cow position: | chr13:1839190-1839635 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 213 |
| Conread position: | 9-468 |
| Cow position: | chr13:39487518-39487072 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 61 |
| Conread position: | 10-204 |
| Cow position: | chr13:34264906-34265092 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 10-251 |
| Cow position: | chr13:46349699-46349454 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 154, 130 |
| Conread position: | 10-469 |
| Cow position: | chr13:24373224-24373681 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 101 |
| Conread position: | 14-341 |
| Cow position: | chr13:12325298-12324961 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 200 |
| Conread position: | 23-439 |
| Cow position: | chr13:46637306-46636886 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 28-438 |
| Cow position: | chr13:47863883-47863455 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 30-436 |
| Cow position: | chr13:1845723-1846126 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 31-470 |
| Cow position: | chr13:20837346-20837774 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 164 |
| Conread position: | 33-435 |
| Cow position: | chr13:34931456-34931070 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 37 |
| Conread position: | 38-392 |
| Cow position: | chr13:56843058-56842697 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 44-345 |
| Cow position: | chr13:42070875-42071162 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 185, 56 |
| Conread position: | 50-264 |
| Cow position: | chr13:25956364-25956581 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 118, 49 |
| Conread position: | 76-451 |
| Cow position: | chr13:46458490-46458881 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 89-468 |
| Cow position: | chr13:1635886-1636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 219 |
| Conread position: | 100-316 |
| Cow position: | chr13:25699093-25698878 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 103-452 |
| Cow position: | chr13:6621697-6621340 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 103-465 |
| Cow position: | chr13:17886412-17886769 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 105-471 |
| Cow position: | chr13:46284712-46284335 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 108-470 |
| Cow position: | chr13:9802967-9803334 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 109-442 |
| Cow position: | chr13:54969899-54969575 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 110-438 |
| Cow position: | chr13:10860055-10859719 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 115-316 |
| Cow position: | chr13:46464872-46465084 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 118-470 |
| Cow position: | chr13:34334032-34333675 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 119-392 |
| Cow position: | chr13:34761590-34761869 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 168-440 |
| Cow position: | chr13:52379766-52379511 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 174-443 |
| Cow position: | chr13:44322873-44323152 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 175-469 |
| Cow position: | chr13:41806745-41807051 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 193-470 |
| Cow position: | chr13:1766758-1767046 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 194-446 |
| Cow position: | chr13:21694550-21694307 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 148, 67 |
| Conread position: | 199-442 |
| Cow position: | chr13:60487469-60487208 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 213-415 |
| Cow position: | chr13:37795454-37795655 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 230-470 |
| Cow position: | chr13:18963028-18963266 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 219, 60 |
Show alignments to all cow chromosomes.