Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-300 |
| Cow position: | chr16:13044014-13043711 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 271 |
| Conread position: | 1-436 |
| Cow position: | chr16:17867293-17867732 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 50 |
| Conread position: | 1-446 |
| Cow position: | chr16:15509124-15508695 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 141 |
| Conread position: | 1-452 |
| Cow position: | chr16:22785850-22786319 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 423 |
| Conread position: | 2-309 |
| Cow position: | chr16:10838317-10838006 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 93 |
| Conread position: | 3-169 |
| Cow position: | chr16:2312474-2312637 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-361 |
| Cow position: | chr16:15734763-15734396 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 212 |
| Conread position: | 3-398 |
| Cow position: | chr16:23035109-23035513 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 88 |
| Conread position: | 3-408 |
| Cow position: | chr16:23747411-23747807 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 85 |
| Conread position: | 3-420 |
| Cow position: | chr16:12243376-12243796 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 148, 37 |
| Conread position: | 3-434 |
| Cow position: | chr16:19152892-19152442 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 70 |
| Conread position: | 3-446 |
| Cow position: | chr16:36910853-36911298 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 141 |
| Conread position: | 3-447 |
| Cow position: | chr16:19445967-19445520 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 4-236 |
| Cow position: | chr16:47781485-47781251 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 149, 95 |
| Conread position: | 4-468 |
| Cow position: | chr16:19632583-19633062 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 70 |
| Conread position: | 5-134 |
| Cow position: | chr16:14444100-14443970 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 6-438 |
| Cow position: | chr16:45552021-45551612 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 93 |
| Conread position: | 6-468 |
| Cow position: | chr16:43850641-43851114 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 215 |
| Conread position: | 6-470 |
| Cow position: | chr16:14799558-14800029 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 82 |
| Conread position: | 7-163 |
| Cow position: | chr16:16118640-16118486 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 12-465 |
| Cow position: | chr16:53547408-53547873 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 56 |
| Conread position: | 14-162 |
| Cow position: | chr16:16558839-16558987 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-370 |
| Cow position: | chr16:41680588-41680958 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 183 |
| Conread position: | 14-442 |
| Cow position: | chr16:47729203-47728760 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 49 |
| Conread position: | 15-446 |
| Cow position: | chr16:30572451-30572878 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 215, 24 |
| Conread position: | 15-470 |
| Cow position: | chr16:26655353-26654894 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 136 |
| Conread position: | 21-209 |
| Cow position: | chr16:55674498-55674687 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 136, 116 |
| Conread position: | 26-331 |
| Cow position: | chr16:4677193-4676865 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 97 |
| Conread position: | 32-412 |
| Cow position: | chr16:341420-341037 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 132, 64 |
| Conread position: | 47-335 |
| Cow position: | chr16:52814030-52814324 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 60-327 |
| Cow position: | chr16:24704919-24705188 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 108, 70 |
| Conread position: | 60-381 |
| Cow position: | chr16:6309953-6309628 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 101, 158 |
| Conread position: | 60-438 |
| Cow position: | chr16:5477225-5477606 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 110 |
| Conread position: | 94-341 |
| Cow position: | chr16:5131780-5132039 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 119-412 |
| Cow position: | chr16:26156064-26156370 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 159-407 |
| Cow position: | chr16:5745844-5746086 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 174-418 |
| Cow position: | chr16:36203610-36203854 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 168, 41 |
| Conread position: | 174-444 |
| Cow position: | chr16:3628828-3628553 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 174-469 |
| Cow position: | chr16:23990466-23990777 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 174-470 |
| Cow position: | chr16:10857606-10857918 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 174-470 |
| Cow position: | chr16:34210384-34210705 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 175-470 |
| Cow position: | chr16:11568105-11568402 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 189-470 |
| Cow position: | chr16:11055485-11055207 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 192-470 |
| Cow position: | chr16:4763132-4762837 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 129 |
| Conread position: | 208-470 |
| Cow position: | chr16:33508043-33507774 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 251 |
Show alignments to all cow chromosomes.