Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-176 |
| Cow position: | chr2:76055364-76055538 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 167, 126 |
| Conread position: | 1-269 |
| Cow position: | chr2:39508663-39508386 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 137, 197 |
| Conread position: | 1-310 |
| Cow position: | chr2:43345098-43345408 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 167, 235 |
| Conread position: | 1-414 |
| Cow position: | chr2:32393597-32393184 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 19 |
| Conread position: | 1-462 |
| Cow position: | chr2:30389565-30389102 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 1-470 |
| Cow position: | chr2:27145167-27145652 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 226 |
| Conread position: | 1-470 |
| Cow position: | chr2:71121216-71120747 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 1-470 |
| Cow position: | chr2:85056190-85055737 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 24 |
| Conread position: | 2-470 |
| Cow position: | chr2:62674044-62674520 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 222 |
| Conread position: | 3-226 |
| Cow position: | chr2:64073737-64073510 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 137, 93 |
| Conread position: | 3-230 |
| Cow position: | chr2:69982604-69982377 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 3-242 |
| Cow position: | chr2:11467455-11467696 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 116 |
| Conread position: | 3-296 |
| Cow position: | chr2:77968311-77968601 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 150, 32 |
| Conread position: | 3-356 |
| Cow position: | chr2:33791289-33791652 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 5 |
| Conread position: | 3-436 |
| Cow position: | chr2:908610-908188 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 94, 120 |
| Conread position: | 3-442 |
| Cow position: | chr2:53716789-53717243 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 320 |
| Conread position: | 3-446 |
| Cow position: | chr2:71495597-71495122 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 241 |
| Conread position: | 3-452 |
| Cow position: | chr2:6292822-6292371 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 127 |
| Conread position: | 3-470 |
| Cow position: | chr2:63287960-63288440 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 218 |
| Conread position: | 3-472 |
| Cow position: | chr2:27319046-27318568 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 327 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 6-326 |
| Cow position: | chr2:31420193-31419867 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 6-440 |
| Cow position: | chr2:72598995-72598544 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 353 |
| Conread position: | 7-470 |
| Cow position: | chr2:21703738-21704201 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 207 |
| Conread position: | 14-191 |
| Cow position: | chr2:35447687-35447871 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 14-267 |
| Cow position: | chr2:21697552-21697811 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 14-470 |
| Cow position: | chr2:33825753-33826216 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 172, 152 |
| Conread position: | 15-315 |
| Cow position: | chr2:74387950-74388246 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 16-262 |
| Cow position: | chr2:50017403-50017650 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 98, 103 |
| Conread position: | 16-446 |
| Cow position: | chr2:22035808-22035385 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 208, 150 |
| Conread position: | 17-446 |
| Cow position: | chr2:42896954-42897392 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 149 |
| Conread position: | 19-214 |
| Cow position: | chr2:41490824-41490621 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 6, 88 |
| Conread position: | 19-429 |
| Cow position: | chr2:20302124-20301734 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 296 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 142, 56 |
| Conread position: | 23-350 |
| Cow position: | chr2:73614904-73615254 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 96 |
| Conread position: | 26-341 |
| Cow position: | chr2:24884124-24883800 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 64 |
| Conread position: | 26-341 |
| Cow position: | chr2:46140998-46141303 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 140, 17 |
| Conread position: | 28-470 |
| Cow position: | chr2:31909863-31910313 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 30-431 |
| Cow position: | chr2:19749770-19749362 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 161 |
| Conread position: | 31-389 |
| Cow position: | chr2:47044542-47044878 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 189, 70 |
| Conread position: | 33-434 |
| Cow position: | chr2:54890473-54890067 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 42 |
| Conread position: | 35-242 |
| Cow position: | chr2:51827500-51827711 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 133, 53 |
| Conread position: | 70-470 |
| Cow position: | chr2:2004-2402 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 92-431 |
| Cow position: | chr2:47745093-47744732 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 69, 93 |
| Conread position: | 102-415 |
| Cow position: | chr2:31490156-31489850 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 103 |
| Conread position: | 115-468 |
| Cow position: | chr2:14465478-14465839 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 107 |
| Conread position: | 119-386 |
| Cow position: | chr2:56042287-56042551 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 164-377 |
| Cow position: | chr2:37787138-37787361 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 168-447 |
| Cow position: | chr2:35359814-35359536 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 168-452 |
| Cow position: | chr2:16123084-16123361 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 174, 52 |
| Conread position: | 169-447 |
| Cow position: | chr2:6820279-6820546 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 174-413 |
| Cow position: | chr2:72183478-72183723 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 174-442 |
| Cow position: | chr2:19494228-19493951 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 174-446 |
| Cow position: | chr2:42309537-42309819 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 174-472 |
| Cow position: | chr2:18061614-18061927 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 176-369 |
| Cow position: | chr2:80595298-80595502 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 177-436 |
| Cow position: | chr2:40313382-40313114 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 181-452 |
| Cow position: | chr2:59960024-59960299 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 222-470 |
| Cow position: | chr2:13342011-13342271 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 76, 238 |
Show alignments to all cow chromosomes.