Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-214 |
| Cow position: | chr3:35415658-35415879 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 5 |
| Conread position: | 1-439 |
| Cow position: | chr3:27347163-27347584 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 79 |
| Conread position: | 1-465 |
| Cow position: | chr3:70754524-70754058 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 1-470 |
| Cow position: | chr3:16115746-16115256 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 97 |
| Conread position: | 3-159 |
| Cow position: | chr3:36538776-36538927 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-301 |
| Cow position: | chr3:65275678-65275970 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 112, 83 |
| Conread position: | 3-335 |
| Cow position: | chr3:27633847-27634189 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 216 |
| Conread position: | 3-364 |
| Cow position: | chr3:31286942-31287305 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 118 |
| Conread position: | 3-380 |
| Cow position: | chr3:56711486-56711859 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 63 |
| Conread position: | 3-413 |
| Cow position: | chr3:3690561-3690980 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 109 |
| Conread position: | 3-436 |
| Cow position: | chr3:23478394-23477955 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 200 |
| Conread position: | 3-436 |
| Cow position: | chr3:42489134-42489586 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 116 |
| Conread position: | 3-444 |
| Cow position: | chr3:60854680-60855126 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 3-447 |
| Cow position: | chr3:42594485-42594947 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 116 |
| Conread position: | 3-453 |
| Cow position: | chr3:77449225-77448777 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 112, 118 |
| Conread position: | 3-465 |
| Cow position: | chr3:51598535-51598078 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 67 |
| Conread position: | 3-470 |
| Cow position: | chr3:40345576-40345085 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 231 |
| Conread position: | 5-213 |
| Cow position: | chr3:45735302-45735090 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 148, 30 |
| Conread position: | 7-399 |
| Cow position: | chr3:80928782-80929194 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 30 |
| Conread position: | 7-437 |
| Cow position: | chr3:55460336-55460782 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 96 |
| Conread position: | 7-470 |
| Cow position: | chr3:32773365-32772921 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 145 |
| Conread position: | 10-436 |
| Cow position: | chr3:74848890-74849318 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 212 |
| Conread position: | 10-469 |
| Cow position: | chr3:73236926-73236446 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 227 |
| Conread position: | 14-147 |
| Cow position: | chr3:1549435-1549302 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-419 |
| Cow position: | chr3:11357504-11357907 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 199, 46 |
| Conread position: | 14-419 |
| Cow position: | chr3:11422888-11422484 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 138, 46 |
| Conread position: | 14-436 |
| Cow position: | chr3:35511941-35511508 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 108 |
| Conread position: | 14-438 |
| Cow position: | chr3:81474142-81473722 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 14-439 |
| Cow position: | chr3:11326216-11326634 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 256, 46 |
| Conread position: | 14-470 |
| Cow position: | chr3:39554183-39554630 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 67 |
| Conread position: | 14-470 |
| Cow position: | chr3:52721853-52722320 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 217 |
| Conread position: | 15-413 |
| Cow position: | chr3:19689490-19689915 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 138, 215 |
| Conread position: | 15-437 |
| Cow position: | chr3:77468103-77467651 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 16-214 |
| Cow position: | chr3:32839796-32839999 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 152, 57 |
| Conread position: | 17-206 |
| Cow position: | chr3:77157480-77157286 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 20-465 |
| Cow position: | chr3:67043949-67044403 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 20-470 |
| Cow position: | chr3:24531970-24531523 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 49 |
| Conread position: | 26-446 |
| Cow position: | chr3:60174343-60174761 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 11 |
| Conread position: | 26-446 |
| Cow position: | chr3:73417659-73417232 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 153 |
| Conread position: | 26-470 |
| Cow position: | chr3:66649291-66649757 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 210 |
| Conread position: | 29-217 |
| Cow position: | chr3:64018861-64018666 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 33-338 |
| Cow position: | chr3:64688067-64688386 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 125, 26 |
| Conread position: | 35-470 |
| Cow position: | chr3:8753585-8753149 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 51 |
| Conread position: | 52-447 |
| Cow position: | chr3:84153434-84153034 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 25 |
| Conread position: | 105-414 |
| Cow position: | chr3:54881832-54881498 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 118-470 |
| Cow position: | chr3:15558009-15557646 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 119-468 |
| Cow position: | chr3:51146619-51146978 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 164-340 |
| Cow position: | chr3:42490464-42490649 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 168-446 |
| Cow position: | chr3:58130991-58130710 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 174-408 |
| Cow position: | chr3:18216776-18217017 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 99 |
| Conread position: | 174-449 |
| Cow position: | chr3:48629600-48629879 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 174-451 |
| Cow position: | chr3:56059800-56059512 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 176-470 |
| Cow position: | chr3:77496816-77496503 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 178-451 |
| Cow position: | chr3:27532668-27532955 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 180-377 |
| Cow position: | chr3:6963721-6963523 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 223-418 |
| Cow position: | chr3:52652138-52652336 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 110, 0 |
Show alignments to all cow chromosomes.