Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-204 |
| Cow position: | chr4:29222338-29222548 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 151, 156 |
| Conread position: | 1-339 |
| Cow position: | chr4:9650190-9649837 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 71, 221 |
| Conread position: | 2-442 |
| Cow position: | chr4:58856571-58857008 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 112 |
| Conread position: | 3-151 |
| Cow position: | chr4:53641504-53641356 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-269 |
| Cow position: | chr4:29951370-29951643 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 153, 67 |
| Conread position: | 3-291 |
| Cow position: | chr4:41975533-41975824 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 225 |
| Conread position: | 3-341 |
| Cow position: | chr4:47511205-47510856 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 232 |
| Conread position: | 3-382 |
| Cow position: | chr4:61172083-61171693 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 3-422 |
| Cow position: | chr4:57652423-57652003 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 212 |
| Conread position: | 3-422 |
| Cow position: | chr4:59565716-59565290 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 152 |
| Conread position: | 3-442 |
| Cow position: | chr4:53762944-53763389 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 111 |
| Conread position: | 3-446 |
| Cow position: | chr4:4300711-4300265 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 40 |
| Conread position: | 3-446 |
| Cow position: | chr4:32749394-32748921 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 230 |
| Conread position: | 3-452 |
| Cow position: | chr4:6630112-6630573 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 30 |
| Conread position: | 3-452 |
| Cow position: | chr4:9822323-9821875 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 67 |
| Conread position: | 3-452 |
| Cow position: | chr4:49741726-49741268 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 153 |
| Conread position: | 3-465 |
| Cow position: | chr4:17176332-17175876 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 151 |
| Conread position: | 4-365 |
| Cow position: | chr4:8597509-8597887 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 231 |
| Conread position: | 6-315 |
| Cow position: | chr4:34043448-34043757 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 214 |
| Conread position: | 6-446 |
| Cow position: | chr4:45114428-45114880 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 7-401 |
| Cow position: | chr4:31586649-31587036 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 79 |
| Conread position: | 9-470 |
| Cow position: | chr4:5776880-5777331 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 25 |
| Conread position: | 10-411 |
| Cow position: | chr4:61191644-61191227 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 158, 189 |
| Conread position: | 12-151 |
| Cow position: | chr4:49884826-49884964 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 14-429 |
| Cow position: | chr4:51407806-51408222 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 14-432 |
| Cow position: | chr4:12913633-12914061 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 122 |
| Conread position: | 14-452 |
| Cow position: | chr4:39646839-39646430 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 147, 56 |
| Conread position: | 14-470 |
| Cow position: | chr4:5188840-5189293 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 139 |
| Conread position: | 14-470 |
| Cow position: | chr4:61271475-61271928 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 59 |
| Conread position: | 22-446 |
| Cow position: | chr4:5623039-5623461 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 25-168 |
| Cow position: | chr4:29067483-29067625 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 26-352 |
| Cow position: | chr4:21162819-21162485 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 234, 11 |
| Conread position: | 27-162 |
| Cow position: | chr4:57566330-57566463 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 51-427 |
| Cow position: | chr4:58433084-58433466 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 8 |
| Conread position: | 76-442 |
| Cow position: | chr4:9168555-9168922 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 102-452 |
| Cow position: | chr4:6792521-6792162 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 131 |
| Conread position: | 108-341 |
| Cow position: | chr4:23758881-23758639 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 118-470 |
| Cow position: | chr4:31634503-31634844 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 119-445 |
| Cow position: | chr4:22115673-22115333 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 120-465 |
| Cow position: | chr4:30288374-30288031 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 222, 43 |
| Conread position: | 153-465 |
| Cow position: | chr4:45240302-45239982 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 117, 162 |
| Conread position: | 168-450 |
| Cow position: | chr4:11389521-11389814 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 174-437 |
| Cow position: | chr4:21365415-21365149 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 175-437 |
| Cow position: | chr4:35982001-35981724 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 189-465 |
| Cow position: | chr4:30960496-30960223 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 152, 72 |
| Conread position: | 190-434 |
| Cow position: | chr4:31172670-31172404 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 199-470 |
| Cow position: | chr4:9815366-9815648 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 199-472 |
| Cow position: | chr4:21391830-21392102 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 215-470 |
| Cow position: | chr4:25906360-25906625 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 203 |
| Conread position: | 217-426 |
| Cow position: | chr4:42921886-42922100 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 7, 133 |
| Conread position: | 235-452 |
| Cow position: | chr4:49885363-49885582 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 45, 11 |
Show alignments to all cow chromosomes.