Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-302 |
| Cow position: | chr5:37048269-37047960 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 163, 139 |
| Conread position: | 1-469 |
| Cow position: | chr5:23646797-23647272 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 3-147 |
| Cow position: | chr5:57127657-57127517 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 3-221 |
| Cow position: | chr5:39118397-39118185 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 161, 69 |
| Conread position: | 3-259 |
| Cow position: | chr5:61017093-61017344 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 111, 46 |
| Conread position: | 3-330 |
| Cow position: | chr5:70404546-70404214 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 3-341 |
| Cow position: | chr5:27176079-27175751 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 150, 206 |
| Conread position: | 3-388 |
| Cow position: | chr5:45912086-45912451 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 30 |
| Conread position: | 3-445 |
| Cow position: | chr5:364377-364808 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 3-447 |
| Cow position: | chr5:23234680-23234216 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 85 |
| Conread position: | 3-452 |
| Cow position: | chr5:26562358-26561905 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 83 |
| Conread position: | 3-465 |
| Cow position: | chr5:25927482-25927951 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 56 |
| Conread position: | 3-468 |
| Cow position: | chr5:48224365-48224838 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 211 |
| Conread position: | 3-470 |
| Cow position: | chr5:60968629-60968181 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 223 |
| Conread position: | 5-213 |
| Cow position: | chr5:10786020-10786238 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 6-151 |
| Cow position: | chr5:27492909-27492764 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-470 |
| Cow position: | chr5:15882252-15882741 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 227 |
| Conread position: | 7-464 |
| Cow position: | chr5:61030010-61030489 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 7-470 |
| Cow position: | chr5:14780684-14781153 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 319 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 107, 112 |
| Conread position: | 10-442 |
| Cow position: | chr5:23753012-23753463 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 104 |
| Conread position: | 10-442 |
| Cow position: | chr5:51076435-51076882 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 108 |
| Conread position: | 15-225 |
| Cow position: | chr5:21146030-21146243 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 153, 25 |
| Conread position: | 16-410 |
| Cow position: | chr5:70128340-70127971 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 185, 18 |
| Conread position: | 22-340 |
| Cow position: | chr5:34483338-34483666 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 19 |
| Conread position: | 27-436 |
| Cow position: | chr5:37425936-37425512 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 195 |
| Conread position: | 28-427 |
| Cow position: | chr5:54112101-54111696 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 125, 58 |
| Conread position: | 29-446 |
| Cow position: | chr5:25225450-25225890 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 92 |
| Conread position: | 34-446 |
| Cow position: | chr5:63173495-63173909 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 281 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 176, 74 |
| Conread position: | 37-414 |
| Cow position: | chr5:62579507-62579872 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 47 |
| Conread position: | 54-267 |
| Cow position: | chr5:59073191-59072971 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 133 |
| Conread position: | 54-341 |
| Cow position: | chr5:51952545-51952246 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 92-385 |
| Cow position: | chr5:34168091-34167780 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 76, 248 |
| Conread position: | 105-470 |
| Cow position: | chr5:15089292-15088923 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 132-438 |
| Cow position: | chr5:57127102-57126782 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 293 |
| Conread position: | 134-352 |
| Cow position: | chr5:28249340-28249129 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 168-444 |
| Cow position: | chr5:26099332-26099609 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 170-408 |
| Cow position: | chr5:27492526-27492270 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 174-446 |
| Cow position: | chr5:27615557-27615273 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 174-470 |
| Cow position: | chr5:66366549-66366268 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 185-442 |
| Cow position: | chr5:25919601-25919851 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 196-470 |
| Cow position: | chr5:27690037-27690329 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 198-470 |
| Cow position: | chr5:51314829-51315114 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 199-470 |
| Cow position: | chr5:6045308-6045020 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 215-446 |
| Cow position: | chr5:56385231-56384986 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 177 |
| Conread position: | 216-451 |
| Cow position: | chr5:34921836-34922081 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 222-430 |
| Cow position: | chr5:72891764-72891976 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 224-470 |
| Cow position: | chr5:6987156-6986892 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 230-446 |
| Cow position: | chr5:3825073-3824856 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 41 |
Show alignments to all cow chromosomes.