Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-314 |
| Cow position: | chr6:1095129-1095428 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 146, 23 |
| Conread position: | 1-438 |
| Cow position: | chr6:30314816-30315276 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 311 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 1-445 |
| Cow position: | chr6:11382739-11383189 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 1-452 |
| Cow position: | chr6:3017673-3017218 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 62 |
| Conread position: | 1-465 |
| Cow position: | chr6:41557700-41557236 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 1-468 |
| Cow position: | chr6:58593883-58594361 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 113 |
| Conread position: | 2-447 |
| Cow position: | chr6:12519726-12519289 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 98 |
| Conread position: | 3-151 |
| Cow position: | chr6:6635371-6635227 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-151 |
| Cow position: | chr6:16337514-16337661 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 139, 70 |
| Conread position: | 3-151 |
| Cow position: | chr6:20172488-20172341 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 60 |
| Conread position: | 3-206 |
| Cow position: | chr6:45692428-45692638 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 3-317 |
| Cow position: | chr6:20332256-20332577 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 67 |
| Conread position: | 3-378 |
| Cow position: | chr6:23891788-23891393 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 233 |
| Conread position: | 3-405 |
| Cow position: | chr6:62754262-62754667 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 3-429 |
| Cow position: | chr6:44377497-44377056 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 80 |
| Conread position: | 3-438 |
| Cow position: | chr6:27710873-27710436 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 64 |
| Conread position: | 3-446 |
| Cow position: | chr6:39917386-39916958 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 22 |
| Conread position: | 3-470 |
| Cow position: | chr6:11159775-11160270 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 85 |
| Conread position: | 3-470 |
| Cow position: | chr6:45617203-45617692 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 4-162 |
| Cow position: | chr6:6244677-6244834 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 5-136 |
| Cow position: | chr6:23932735-23932865 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 5-433 |
| Cow position: | chr6:9469865-9469439 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 148, 75 |
| Conread position: | 5-470 |
| Cow position: | chr6:51071937-51071452 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 228 |
| Conread position: | 6-387 |
| Cow position: | chr6:4666564-4666953 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 6-451 |
| Cow position: | chr6:10423395-10422942 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 122 |
| Conread position: | 6-469 |
| Cow position: | chr6:32428461-32427999 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 107 |
| Conread position: | 6-470 |
| Cow position: | chr6:29077954-29077476 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 23 |
| Conread position: | 10-341 |
| Cow position: | chr6:50822453-50822120 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 105, 86 |
| Conread position: | 11-451 |
| Cow position: | chr6:24917501-24917941 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 152, 63 |
| Conread position: | 12-255 |
| Cow position: | chr6:54016449-54016218 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 230, 20 |
| Conread position: | 14-268 |
| Cow position: | chr6:31687964-31688223 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 208 |
| Conread position: | 14-325 |
| Cow position: | chr6:7998234-7997919 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 147, 49 |
| Conread position: | 14-434 |
| Cow position: | chr6:63406886-63406463 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 14-444 |
| Cow position: | chr6:26637478-26637076 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 165, 45 |
| Conread position: | 14-465 |
| Cow position: | chr6:38899553-38900005 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 49 |
| Conread position: | 14-466 |
| Cow position: | chr6:13592929-13592465 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 221 |
| Conread position: | 15-340 |
| Cow position: | chr6:31526599-31526929 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 146, 40 |
| Conread position: | 16-364 |
| Cow position: | chr6:42362808-42362443 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 42, 116 |
| Conread position: | 20-445 |
| Cow position: | chr6:40299635-40300080 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 133, 57 |
| Conread position: | 23-446 |
| Cow position: | chr6:14289154-14289561 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 96 |
| Conread position: | 23-470 |
| Cow position: | chr6:57686360-57685907 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 26-298 |
| Cow position: | chr6:67822031-67821758 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 30-377 |
| Cow position: | chr6:54032429-54032094 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 42-446 |
| Cow position: | chr6:3374379-3374796 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 149 |
| Conread position: | 72-438 |
| Cow position: | chr6:55935815-55936195 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 150 |
| Conread position: | 97-446 |
| Cow position: | chr6:20172360-20171994 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 100-301 |
| Cow position: | chr6:29084072-29084282 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 128 |
| Conread position: | 101-465 |
| Cow position: | chr6:60930763-60931152 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 117 |
| Conread position: | 102-301 |
| Cow position: | chr6:50501407-50501193 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 102-470 |
| Cow position: | chr6:6722219-6721868 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 104-451 |
| Cow position: | chr6:41152776-41152418 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 126, 95 |
| Conread position: | 108-435 |
| Cow position: | chr6:24223033-24223377 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 119-470 |
| Cow position: | chr6:34549517-34549157 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 119-470 |
| Cow position: | chr6:52002471-52002118 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 168-417 |
| Cow position: | chr6:12964517-12964248 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 174-431 |
| Cow position: | chr6:24962196-24961933 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 168, 41 |
| Conread position: | 174-470 |
| Cow position: | chr6:23986692-23986988 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 192-470 |
| Cow position: | chr6:19427494-19427198 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 192-471 |
| Cow position: | chr6:28564209-28563927 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 203-440 |
| Cow position: | chr6:1562153-1561914 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 214-470 |
| Cow position: | chr6:32121921-32121659 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 217-452 |
| Cow position: | chr6:1890831-1891079 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 123 |
| Conread position: | 229-444 |
| Cow position: | chr6:43329811-43330029 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 14 |
Show alignments to all cow chromosomes.