Cow genome map
| Conread name: | rsto236_j17.y1 |
| Conread position: | 1-442 |
| Cow position: | chrX:24201401-24200957 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 90 |
| Conread position: | 1-468 |
| Cow position: | chrX:7361646-7362116 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 221 |
| Conread position: | 3-112 |
| Cow position: | chrX:31816909-31816801 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-162 |
| Cow position: | chrX:21885895-21886056 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 3-186 |
| Cow position: | chrX:42758293-42758104 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 109, 29 |
| Conread position: | 3-197 |
| Cow position: | chrX:18814390-18814190 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 165, 46 |
| Conread position: | 3-203 |
| Cow position: | chrX:19018044-19018243 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 166, 23 |
| Conread position: | 3-217 |
| Cow position: | chrX:24286179-24285954 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 3-235 |
| Cow position: | chrX:10311953-10311727 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 165, 65 |
| Conread position: | 3-434 |
| Cow position: | chrX:35926175-35925739 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 218 |
| Conread position: | 3-443 |
| Cow position: | chrX:12688866-12689309 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 275 |
| Conread position: | 3-446 |
| Cow position: | chrX:905550-905116 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 64, 94 |
| Conread position: | 3-454 |
| Cow position: | chrX:25281256-25281716 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 172 |
| Conread position: | 3-469 |
| Cow position: | chrX:21816478-21815997 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 56 |
| Conread position: | 3-469 |
| Cow position: | chrX:43647547-43648008 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 37 |
| Conread position: | 3-470 |
| Cow position: | chrX:11675284-11674793 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 230 |
| Conread position: | 3-470 |
| Cow position: | chrX:12826969-12826482 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 218 |
| Conread position: | 5-370 |
| Cow position: | chrX:23253984-23254378 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 65 |
| Conread position: | 5-452 |
| Cow position: | chrX:30729198-30729652 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 40 |
| Conread position: | 6-267 |
| Cow position: | chrX:16816886-16816619 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 109 |
| Conread position: | 6-423 |
| Cow position: | chrX:2186476-2186041 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 236 |
| Conread position: | 7-148 |
| Cow position: | chrX:956696-956555 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-447 |
| Cow position: | chrX:8558249-8558704 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 211 |
| Conread position: | 10-464 |
| Cow position: | chrX:35632549-35633012 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 10-466 |
| Cow position: | chrX:2147551-2147069 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 25 |
| Conread position: | 14-436 |
| Cow position: | chrX:9910548-9910983 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 15-424 |
| Cow position: | chrX:4631465-4631889 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 217 |
| Conread position: | 23-431 |
| Cow position: | chrX:13245792-13245366 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 33-219 |
| Cow position: | chrX:24952372-24952560 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 103, 41 |
| Conread position: | 39-446 |
| Cow position: | chrX:13058753-13058340 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 42-455 |
| Cow position: | chrX:37956531-37956118 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 167 |
| Conread position: | 46-447 |
| Cow position: | chrX:11982313-11981890 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 187 |
| Conread position: | 62-216 |
| Cow position: | chrX:20504876-20504716 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 106, 152 |
| Conread position: | 65-431 |
| Cow position: | chrX:3147357-3146971 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 85-425 |
| Cow position: | chrX:20791680-20792037 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 108-446 |
| Cow position: | chrX:6563632-6563272 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 108-470 |
| Cow position: | chrX:33802895-33803281 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 118-401 |
| Cow position: | chrX:2764965-2764674 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 40, 113 |
| Conread position: | 125-472 |
| Cow position: | chrX:39545882-39546240 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 174-419 |
| Cow position: | chrX:26940464-26940705 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 174-452 |
| Cow position: | chrX:13785320-13785613 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 109, 97 |
| Conread position: | 178-470 |
| Cow position: | chrX:17726011-17725713 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 182-445 |
| Cow position: | chrX:39701256-39700988 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 192-416 |
| Cow position: | chrX:31340735-31340494 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 213-470 |
| Cow position: | chrX:34532523-34532266 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 216-470 |
| Cow position: | chrX:25848913-25848650 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 222-445 |
| Cow position: | chrX:27514864-27514628 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.