• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rsug07_b12.y1
        

               
Conread position:
               
1-242
               

               
Cow position:
               
chr5:24919244-24919002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:72046011-72045738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr5:41936160-41935882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr5:1105227-1104896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 12
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr5:22565271-22565602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 12
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr5:37645698-37646055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
126, 12
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr5:29771151-29771504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr5:19813587-19813227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 13
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:65933296-65932930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:23856530-23856158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr5:23140944-23140557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr5:62827121-62826727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr5:56467338-56467726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 10
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr5:21944010-21944437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 168
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr5:50821421-50821823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr5:28224093-28224501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr5:39447902-39447487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr5:43923516-43923104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr5:66815948-66815523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:16894136-16893718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 13
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:21040341-21039925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 6
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:34506293-34505873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:52165546-52165124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:54714109-54713678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 12
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:55068355-55068759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 13
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:58855737-58856156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr5:31469941-31469539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
2-330
               

               
Cow position:
               
chr5:70290119-70290444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr5:30816349-30816723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr5:42777408-42777804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr5:65776758-65776346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 25
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr5:47704501-47704072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr5:38852994-38853323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr5:50729134-50729457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 10
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr5:56442916-56443246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr5:33414770-33414439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr5:44752679-44752318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 169
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr5:64844482-64844123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr5:55756805-55756421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 37
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr5:3204473-3204868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr5:46122694-46122316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
214, 67
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr5:16184727-16185128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 10
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr5:21524800-21525200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
3-412
               

               
Cow position:
               
chr5:27015328-27015730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr5:5937959-5938376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr5:52040675-52040269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
4-370
               

               
Cow position:
               
chr5:45940977-45940609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 10
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:58460771-58460365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
11, 157
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr5:34915779-34916170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr5:50637469-50637865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr5:62107854-62107452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
4-408
               

               
Cow position:
               
chr5:54310963-54311384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
5-318
               

               
Cow position:
               
chr5:41608950-41609259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
201, 116
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr5:44054399-44054069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 152
               

               
Conread position:
               
5-399
               

               
Cow position:
               
chr5:54405258-54404850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 128
               

               
Conread position:
               
5-407
               

               
Cow position:
               
chr5:24485774-24485387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
328, 153
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chr5:26376205-26376471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
122, 154
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chr5:70249792-70250069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 134
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr5:26133437-26133148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 160
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr5:42096265-42096590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 84
               

               
Conread position:
               
6-333
               

               
Cow position:
               
chr5:34442156-34441825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 155
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr5:46611447-46611120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
151, 121
               

               
Conread position:
               
6-352
               

               
Cow position:
               
chr5:27007532-27007885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
49, 157
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr5:72172673-72173025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
201, 19
               

               
Conread position:
               
6-370
               

               
Cow position:
               
chr5:15882839-15882463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
6-396
               

               
Cow position:
               
chr5:44583477-44583096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr5:18573807-18574228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 154
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr5:60015561-60015821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr5:17384464-17384202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
7-272
               

               
Cow position:
               
chr5:19969394-19969119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr5:27010932-27011210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 159
               

               
Conread position:
               
7-278
               

               
Cow position:
               
chr5:41953169-41952891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr5:48224932-48224647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
127, 7
               

               
Conread position:
               
7-297
               

               
Cow position:
               
chr5:61030592-61030291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
8, 154
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr5:31635087-31635371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
114, 26
               

               
Conread position:
               
7-313
               

               
Cow position:
               
chr5:41129392-41129706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
108, 164
               

               
Conread position:
               
7-324
               

               
Cow position:
               
chr5:59759031-59759342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr5:13691937-13691602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 85
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr5:27403602-27403270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 110
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr5:35144988-35145315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 155
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr5:14630270-14629937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
115, 153
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr5:39675805-39675483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr5:55176530-55176875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 143
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr5:2500555-2500196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr5:6528319-6528664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 32
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr5:6575924-6575603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
218, 59
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr5:55942760-55942409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
7-361
               

               
Cow position:
               
chr5:26467260-26467619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 151
               

               
Conread position:
               
7-366
               

               
Cow position:
               
chr5:34115286-34115652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 167
               

               
Conread position:
               
7-366
               

               
Cow position:
               
chr5:67932826-67932467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 156
               

               
Conread position:
               
7-370
               

               
Cow position:
               
chr5:9430836-9430457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
125, 168
               

               
Conread position:
               
7-383
               

               
Cow position:
               
chr5:34463946-34463563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
114, 39
               

               
Conread position:
               
7-384
               

               
Cow position:
               
chr5:49820779-49821164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 154
               

               
Conread position:
               
7-385
               

               
Cow position:
               
chr5:18276129-18276507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr5:19470545-19470158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-397
               

               
Cow position:
               
chr5:16508730-16509137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr5:29903884-29903485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr5:46104302-46103910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
112, 157
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr5:56523812-56524212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 195
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr5:61839826-61840226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 151
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:7140446-7140067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:7921744-7921365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
114, 162
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:24348759-24349146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:29827691-29828085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 151
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:35207899-35208303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 125
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:44994407-44994001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:47889077-47888672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:63840506-63840109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 96
               

               
Conread position:
               
7-400
               

               
Cow position:
               
chr5:26094532-26094126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 152
               

               
Conread position:
               
7-400
               

               
Cow position:
               
chr5:58004883-58005286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 74
               

               
Conread position:
               
7-408
               

               
Cow position:
               
chr5:20408020-20407630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
114, 75
               

               
Conread position:
               
7-408
               

               
Cow position:
               
chr5:30486889-30487290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 150
               

               
Conread position:
               
7-408
               

               
Cow position:
               
chr5:47317330-47316926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-408
               

               
Cow position:
               
chr5:53855340-53855748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 163
               

               
Conread position:
               
7-408
               

               
Cow position:
               
chr5:72564397-72564812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 89
               

               
Conread position:
               
7-412
               

               
Cow position:
               
chr5:15363531-15363934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
135, 150
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr5:14550949-14550531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 99
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr5:15478747-15479179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr5:21617103-21617511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr5:21828494-21828921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 161
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr5:34528203-34528604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr5:41951443-41951043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 115
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:14314161-14314582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 78
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:15598595-15598181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 100
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:30302536-30302948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 153
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:34638531-34638938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 100
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:41546252-41545839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 138
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:45846053-45845637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:47601449-47601866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 277
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:57935473-57935054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:62172044-62172466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
117, 165
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr5:66366171-66366564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr5:35762928-35763324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr5:43457870-43457477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr5:69337452-69337875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr5:44707933-44707686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
119, 152
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr5:30347316-30347044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 103
               

               
Conread position:
               
8-333
               

               
Cow position:
               
chr5:49558801-49559135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 274
               

               
Conread position:
               
8-339
               

               
Cow position:
               
chr5:12146332-12146668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 152
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chr5:51309606-51309976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
114, 151
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr5:6044925-6045326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 152
               

               
Conread position:
               
8-400
               

               
Cow position:
               
chr5:16206503-16206113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 151
               

               
Conread position:
               
8-409
               

               
Cow position:
               
chr5:26790805-26790406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 146
               

               
Conread position:
               
8-415
               

               
Cow position:
               
chr5:30276334-30276745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 142
               

               
Conread position:
               
9-392
               

               
Cow position:
               
chr5:6129996-6130386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
112, 134
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr5:12672381-12672081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
208, 119
               

               
Conread position:
               
13-414
               

               
Cow position:
               
chr5:28330683-28330290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
14-285
               

               
Cow position:
               
chr5:67212026-67212303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 143
               

               
Conread position:
               
14-290
               

               
Cow position:
               
chr5:51761525-51761238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 146
               

               
Conread position:
               
14-310
               

               
Cow position:
               
chr5:4166315-4166614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 154
               

               
Conread position:
               
14-324
               

               
Cow position:
               
chr5:14415415-14415736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
14-333
               

               
Cow position:
               
chr5:26378019-26377703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 143
               

               
Conread position:
               
14-399
               

               
Cow position:
               
chr5:53841929-53842320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
132, 90
               

               
Conread position:
               
14-413
               

               
Cow position:
               
chr5:58793969-58793554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 63
               

               
Conread position:
               
15-352
               

               
Cow position:
               
chr5:47871405-47871054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 145
               

               
Conread position:
               
16-278
               

               
Cow position:
               
chr5:63967994-63967732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 75
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chr5:44848363-44847985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
19-392
               

               
Cow position:
               
chr5:41523140-41522769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 144
               

               
Conread position:
               
20-399
               

               
Cow position:
               
chr5:32697146-32696783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 109
               

               
Conread position:
               
20-413
               

               
Cow position:
               
chr5:28927946-28927532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 150
               

               
Conread position:
               
21-325
               

               
Cow position:
               
chr5:75829077-75828778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
207, 52
               

               
Conread position:
               
21-400
               

               
Cow position:
               
chr5:39094206-39094590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
21-414
               

               
Cow position:
               
chr5:32153664-32153265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 145
               

               
Conread position:
               
22-296
               

               
Cow position:
               
chr5:28035376-28035639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
196, 27
               

               
Conread position:
               
22-333
               

               
Cow position:
               
chr5:51357849-51357534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
105, 123
               

               
Conread position:
               
23-370
               

               
Cow position:
               
chr5:41604264-41604629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
98, 354
               

               
Conread position:
               
26-409
               

               
Cow position:
               
chr5:20783284-20783669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
29-413
               

               
Cow position:
               
chr5:52645420-52645027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
35-275
               

               
Cow position:
               
chr5:17631207-17630954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
35-352
               

               
Cow position:
               
chr5:39936769-39937094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
35-352
               

               
Cow position:
               
chr5:60519841-60520150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 86
               

               
Conread position:
               
35-390
               

               
Cow position:
               
chr5:47313140-47313504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
36-352
               

               
Cow position:
               
chr5:45226162-45225836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 129
               

               
Conread position:
               
36-365
               

               
Cow position:
               
chr5:43858761-43858435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 124
               

               
Conread position:
               
37-261
               

               
Cow position:
               
chr5:52269520-52269287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
37-349
               

               
Cow position:
               
chr5:26990066-26990377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
41-347
               

               
Cow position:
               
chr5:45705719-45706029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
45-400
               

               
Cow position:
               
chr5:42747838-42748189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 59
               

               
Conread position:
               
46-252
               

               
Cow position:
               
chr5:19751537-19751742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 5
               

               
Conread position:
               
48-396
               

               
Cow position:
               
chr5:60715676-60715328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
68, 61
               

               
Conread position:
               
50-328
               

               
Cow position:
               
chr5:15462406-15462676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
173, 80
               

               
Conread position:
               
53-408
               

               
Cow position:
               
chr5:50722731-50723094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
53-414
               

               
Cow position:
               
chr5:20555065-20554700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr5:41229396-41229689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
58-399
               

               
Cow position:
               
chr5:4551820-4552184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
5, 103
               

               
Conread position:
               
58-400
               

               
Cow position:
               
chr5:3281520-3281875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
59-414
               

               
Cow position:
               
chr5:65752549-65752914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 98
               

               
Conread position:
               
60-395
               

               
Cow position:
               
chr5:65941561-65941215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
61-414
               

               
Cow position:
               
chr5:5111385-5111020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
65-396
               

               
Cow position:
               
chr5:65887318-65886972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
66-414
               

               
Cow position:
               
chr5:50533683-50533330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
67-414
               

               
Cow position:
               
chr5:63964483-63964115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
68-221
               

               
Cow position:
               
chr5:22312166-22312315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
69-366
               

               
Cow position:
               
chr5:72149951-72150249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
69-414
               

               
Cow position:
               
chr5:45170061-45170413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
71-326
               

               
Cow position:
               
chr5:33661556-33661816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
72-352
               

               
Cow position:
               
chr5:3491912-3492183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
73-416
               

               
Cow position:
               
chr5:33081086-33080735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 102
               

               
Conread position:
               
77-383
               

               
Cow position:
               
chr5:59443543-59443233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
80-334
               

               
Cow position:
               
chr5:63917696-63917443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
80-392
               

               
Cow position:
               
chr5:43474565-43474877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
82-399
               

               
Cow position:
               
chr5:9090307-9089984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
84-414
               

               
Cow position:
               
chr5:61576255-61576599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
43, 10
               

               
Conread position:
               
87-407
               

               
Cow position:
               
chr5:63987729-63987398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
92-398
               

               
Cow position:
               
chr5:57327511-57327831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
92-400
               

               
Cow position:
               
chr5:59298236-59297922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
96-398
               

               
Cow position:
               
chr5:4507234-4506927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
103-294
               

               
Cow position:
               
chr5:63992430-63992236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
103-352
               

               
Cow position:
               
chr5:42063937-42064191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
103-400
               

               
Cow position:
               
chr5:65601197-65601497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
105-399
               

               
Cow position:
               
chr5:11229933-11229633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
107-338
               

               
Cow position:
               
chr5:37366628-37366871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 192
               

               
Conread position:
               
108-333
               

               
Cow position:
               
chr5:63388535-63388760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
114-399
               

               
Cow position:
               
chr5:59326080-59325803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
115-363
               

               
Cow position:
               
chr5:65924952-65924693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
115-383
               

               
Cow position:
               
chr5:19278944-19278683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
115-400
               

               
Cow position:
               
chr5:61656355-61656631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
115-415
               

               
Cow position:
               
chr5:31640176-31640480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
118-413
               

               
Cow position:
               
chr5:58229455-58229749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
24, 214
               

               
Conread position:
               
119-333
               

               
Cow position:
               
chr5:4347958-4347762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
120-407
               

               
Cow position:
               
chr5:2288807-2288501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
121-400
               

               
Cow position:
               
chr5:28926429-28926140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
123-399
               

               
Cow position:
               
chr5:64176364-64176087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
124-399
               

               
Cow position:
               
chr5:75437139-75436847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
125-392
               

               
Cow position:
               
chr5:65588471-65588735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
126-290
               

               
Cow position:
               
chr5:20779623-20779459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
126-399
               

               
Cow position:
               
chr5:55967121-55966841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
126-413
               

               
Cow position:
               
chr5:53835477-53835770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
127-290
               

               
Cow position:
               
chr5:27306081-27306247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
127-306
               

               
Cow position:
               
chr5:61455517-61455698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
127-314
               

               
Cow position:
               
chr5:32087960-32087767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
127-327
               

               
Cow position:
               
chr5:13536918-13537111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
127-363
               

               
Cow position:
               
chr5:56433564-56433801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
127-392
               

               
Cow position:
               
chr5:30639087-30638831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
225, 8
               

               
Conread position:
               
127-399
               

               
Cow position:
               
chr5:30844875-30845152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
127-408
               

               
Cow position:
               
chr5:58144843-58144553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
127-409
               

               
Cow position:
               
chr5:1779499-1779236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
228, 24
               

               
Conread position:
               
127-413
               

               
Cow position:
               
chr5:1247038-1247319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
127-413
               

               
Cow position:
               
chr5:51999982-52000276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
127-414
               

               
Cow position:
               
chr5:35684695-35684992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
127-414
               

               
Cow position:
               
chr5:38832878-38833175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
128-334
               

               
Cow position:
               
chr5:28324109-28324321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
130-318
               

               
Cow position:
               
chr5:9498155-9498340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
167, 5
               

               
Conread position:
               
130-367
               

               
Cow position:
               
chr5:43738186-43737949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
130-386
               

               
Cow position:
               
chr5:9859954-9859685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
130-397
               

               
Cow position:
               
chr5:72903460-72903195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
131-408
               

               
Cow position:
               
chr5:36854977-36855252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
131-408
               

               
Cow position:
               
chr5:41164853-41165136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
132-351
               

               
Cow position:
               
chr5:56135203-56134981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
132-352
               

               
Cow position:
               
chr5:3771613-3771836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
133-352
               

               
Cow position:
               
chr5:40357102-40356877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 29
               

               
Conread position:
               
134-413
               

               
Cow position:
               
chr5:11668409-11668132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr5:6683578-6683389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr5:37814393-37814588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
135-334
               

               
Cow position:
               
chr5:46323042-46322843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-347
               

               
Cow position:
               
chr5:41636643-41636853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
135-349
               

               
Cow position:
               
chr5:32956320-32956111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
135-352
               

               
Cow position:
               
chr5:4032219-4032004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
135-363
               

               
Cow position:
               
chr5:32963859-32963633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
135-396
               

               
Cow position:
               
chr5:17063324-17063050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
135-400
               

               
Cow position:
               
chr5:54064549-54064816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-408
               

               
Cow position:
               
chr5:49685511-49685223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
135-413
               

               
Cow position:
               
chr5:17999726-17999439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
135-414
               

               
Cow position:
               
chr5:24996454-24996168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-414
               

               
Cow position:
               
chr5:30253515-30253795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-414
               

               
Cow position:
               
chr5:54350591-54350307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
136-399
               

               
Cow position:
               
chr5:1766574-1766310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
137-369
               

               
Cow position:
               
chr5:15426300-15426536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
137-400
               

               
Cow position:
               
chr5:51490982-51490724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
138-297
               

               
Cow position:
               
chr5:15412465-15412629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
138-363
               

               
Cow position:
               
chr5:72891978-72891758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
139, 149
               

               
Conread position:
               
140-287
               

               
Cow position:
               
chr5:40595227-40595077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-316
               

               
Cow position:
               
chr5:26541071-26541241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-317
               

               
Cow position:
               
chr5:2851089-2851268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr5:41303316-41303124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr5:24642947-24642765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-349
               

               
Cow position:
               
chr5:40928198-40927996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
140-358
               

               
Cow position:
               
chr5:5257522-5257305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
140-359
               

               
Cow position:
               
chr5:40388091-40387879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
140-385
               

               
Cow position:
               
chr5:56820485-56820235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-397
               

               
Cow position:
               
chr5:73079987-73080240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
187, 16
               

               
Conread position:
               
140-399
               

               
Cow position:
               
chr5:54086315-54086581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-399
               

               
Cow position:
               
chr5:56070628-56070898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
140-408
               

               
Cow position:
               
chr5:16938233-16937974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
140-413
               

               
Cow position:
               
chr5:34300700-34300972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
193, 16
               

               
Conread position:
               
141-352
               

               
Cow position:
               
chr5:42744573-42744772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chr5:12709662-12709942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
141-414
               

               
Cow position:
               
chr5:64137027-64137310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
142-352
               

               
Cow position:
               
chr5:18090504-18090712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
191, 14
               

               
Conread position:
               
142-363
               

               
Cow position:
               
chr5:48757721-48757935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
144-329
               

               
Cow position:
               
chr5:54530761-54530945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
144-395
               

               
Cow position:
               
chr5:56028751-56028504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chr5:16025682-16025412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr5:2309785-2309503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr5:11427463-11427180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr5:21964071-21964342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
186, 29
               

               
Conread position:
               
146-397
               

               
Cow position:
               
chr5:71494595-71494858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 144
               

               
Conread position:
               
147-320
               

               
Cow position:
               
chr5:66281011-66280838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
149-413
               

               
Cow position:
               
chr5:49362207-49361939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
150-318
               

               
Cow position:
               
chr5:33537675-33537840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
155-352
               

               
Cow position:
               
chr5:57271477-57271277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
70, 131
               

               
Conread position:
               
156-352
               

               
Cow position:
               
chr5:40039982-40039782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
62, 98
               

               
Conread position:
               
156-397
               

               
Cow position:
               
chr5:28459925-28459671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
156-400
               

               
Cow position:
               
chr5:43395349-43395109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
156-408
               

               
Cow position:
               
chr5:57736903-57737147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
69, 62
               

               
Conread position:
               
157-314
               

               
Cow position:
               
chr5:5848397-5848243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
157-395
               

               
Cow position:
               
chr5:8024402-8024158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
157-395
               

               
Cow position:
               
chr5:35969332-35969568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
157-399
               

               
Cow position:
               
chr5:26262884-26262635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
157-399
               

               
Cow position:
               
chr5:35235919-35235670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
157-399
               

               
Cow position:
               
chr5:47547927-47547683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 23
               

               
Conread position:
               
157-412
               

               
Cow position:
               
chr5:18898773-18899028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
158-331
               

               
Cow position:
               
chr5:12563216-12563042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
158-333
               

               
Cow position:
               
chr5:71158473-71158295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 103
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr5:29212739-29212949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
62, 86
               

               
Conread position:
               
158-395
               

               
Cow position:
               
chr5:45036812-45037049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
158-413
               

               
Cow position:
               
chr5:43992116-43992377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
159-398
               

               
Cow position:
               
chr5:4280255-4280484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 117
               

               
Conread position:
               
159-413
               

               
Cow position:
               
chr5:458273-458542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
59, 202
               

               
Conread position:
               
160-399
               

               
Cow position:
               
chr5:7044918-7044666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
160-411
               

               
Cow position:
               
chr5:44049495-44049754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
172, 125
               

               
Conread position:
               
160-413
               

               
Cow position:
               
chr5:51053855-51053602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
162-400
               

               
Cow position:
               
chr5:8994771-8994525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
163-312
               

               
Cow position:
               
chr5:24837150-24837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 115
               

               
Conread position:
               
163-400
               

               
Cow position:
               
chr5:35449049-35449276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
167-408
               

               
Cow position:
               
chr5:56518410-56518174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
170-390
               

               
Cow position:
               
chr5:69731320-69731530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
192, 73
               

               
Conread position:
               
172-387
               

               
Cow position:
               
chr5:34561813-34562037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
173-413
               

               
Cow position:
               
chr5:1678204-1678445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
175-334
               

               
Cow position:
               
chr5:50870349-50870513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
177-385
               

               
Cow position:
               
chr5:4220790-4221005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 104
               

               
Conread position:
               
177-414
               

               
Cow position:
               
chr5:69461144-69461387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
179-349
               

               
Cow position:
               
chr5:30561531-30561706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 144
               

               
Conread position:
               
183-398
               

               
Cow position:
               
chr5:17644840-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
184-360
               

               
Cow position:
               
chr5:37808848-37808673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
186-413
               

               
Cow position:
               
chr5:59115201-59115439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
187-352
               

               
Cow position:
               
chr5:39242370-39242210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
193-331
               

               
Cow position:
               
chr5:23208929-23208792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
193-333
               

               
Cow position:
               
chr5:45026092-45025952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
203-413
               

               
Cow position:
               
chr5:11540208-11539997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
205-400
               

               
Cow position:
               
chr5:50972373-50972570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
129, 13
               

               
Conread position:
               
215-406
               

               
Cow position:
               
chr5:65883924-65883726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
216-399
               

               
Cow position:
               
chr5:51801117-51800933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
216-399
               

               
Cow position:
               
chr5:71579026-71579215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
216-412
               

               
Cow position:
               
chr5:30629305-30629107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
216-412
               

               
Cow position:
               
chr5:35247258-35247060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
216-413
               

               
Cow position:
               
chr5:12761263-12761065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
218-399
               

               
Cow position:
               
chr5:66972282-66972468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 56
               

               
Conread position:
               
218-413
               

               
Cow position:
               
chr5:46512908-46512715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
218-413
               

               
Cow position:
               
chr5:66581818-66582014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
218-415
               

               
Cow position:
               
chr5:21920226-21920436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
224-327
               

               
Cow position:
               
chr5:61049220-61049324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
231-365
               

               
Cow position:
               
chr5:54768042-54767909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 43
               
Show alignments to all cow chromosomes.