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Cow genome map

           
Conread name:
           
rsug07_b12.y1
        

               
Conread position:
               
1-268
               

               
Cow position:
               
chr6:7801716-7801446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr6:38988028-38987753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
14, 164
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr6:23695645-23695966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr6:10605331-10605665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr6:66304192-66303844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 12
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr6:5095903-5095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 12
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr6:35103677-35103323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 12
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr6:67214389-67214755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr6:6596234-6596595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr6:40031840-40032212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:38233639-38234011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:16737668-16738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 12
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr6:18447866-18447462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr6:21312108-21311704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 12
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr6:63252252-63251869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
214, 10
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:8804896-8804467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr6:50120139-50119719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr6:6068041-6067635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
123, 13
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr6:44098735-44099154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 13
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr6:52556824-52556480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
140, 155
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr6:51835051-51835444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
2-408
               

               
Cow position:
               
chr6:35181598-35181195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr6:8562365-8562700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr6:65862335-65862670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr6:61575245-61575615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
53, 164
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr6:3979012-3978612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr6:9751397-9751001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr6:62925346-62924945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr6:28147905-28148308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 11
               

               
Conread position:
               
3-413
               

               
Cow position:
               
chr6:6343076-6343493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 90
               

               
Conread position:
               
3-413
               

               
Cow position:
               
chr6:42565334-42565755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 157
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:444976-445392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:53178288-53178699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr6:16397534-16397266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
6, 163
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr6:9375722-9375394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 86
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr6:66363595-66363263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 164
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr6:2607264-2607599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr6:15046436-15046082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr6:14839376-14839014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 10
               

               
Conread position:
               
4-385
               

               
Cow position:
               
chr6:4864890-4864508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 151
               

               
Conread position:
               
4-416
               

               
Cow position:
               
chr6:18987870-18988282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 9
               

               
Conread position:
               
5-370
               

               
Cow position:
               
chr6:65870675-65871052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 58
               

               
Conread position:
               
5-413
               

               
Cow position:
               
chr6:47339705-47339289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 9
               

               
Conread position:
               
5-415
               

               
Cow position:
               
chr6:36928303-36928730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 159
               

               
Conread position:
               
6-279
               

               
Cow position:
               
chr6:13592381-13592644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
212, 19
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr6:45617787-45617502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 8
               

               
Conread position:
               
6-288
               

               
Cow position:
               
chr6:51071355-51071651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
115, 160
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chr6:28084362-28084071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
98, 131
               

               
Conread position:
               
6-293
               

               
Cow position:
               
chr6:24918040-24917766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
200, 90
               

               
Conread position:
               
6-303
               

               
Cow position:
               
chr6:12844961-12845262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 161
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr6:52002021-52002340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 153
               

               
Conread position:
               
6-338
               

               
Cow position:
               
chr6:35842312-35842639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 122
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr6:12387669-12387330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
115, 151
               

               
Conread position:
               
6-346
               

               
Cow position:
               
chr6:63197516-63197169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
135, 86
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr6:24327484-24327142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 154
               

               
Conread position:
               
6-352
               

               
Cow position:
               
chr6:8318514-8318161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 153
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr6:16625599-16625952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
115, 154
               

               
Conread position:
               
6-385
               

               
Cow position:
               
chr6:5302748-5302380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
334, 129
               

               
Conread position:
               
6-399
               

               
Cow position:
               
chr6:35990575-35990183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
6-399
               

               
Cow position:
               
chr6:58073694-58074103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 156
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr6:55842509-55842099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
111, 154
               

               
Conread position:
               
7-272
               

               
Cow position:
               
chr6:16492254-16491995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
7-284
               

               
Cow position:
               
chr6:52120890-52121173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr6:1174849-1174560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 129
               

               
Conread position:
               
7-292
               

               
Cow position:
               
chr6:25783965-25784255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr6:8209933-8209646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
130, 117
               

               
Conread position:
               
7-323
               

               
Cow position:
               
chr6:41557136-41557448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
7-324
               

               
Cow position:
               
chr6:55474902-55475224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 143
               

               
Conread position:
               
7-324
               

               
Cow position:
               
chr6:55608154-55607841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 153
               

               
Conread position:
               
7-325
               

               
Cow position:
               
chr6:46570778-46571089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr6:10106348-10106018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
110, 157
               

               
Conread position:
               
7-327
               

               
Cow position:
               
chr6:46666759-46667086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
7-329
               

               
Cow position:
               
chr6:45690957-45690614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 136
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr6:1784113-1783797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr6:13741350-13741683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 102
               

               
Conread position:
               
7-345
               

               
Cow position:
               
chr6:11638088-11637759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 87
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr6:54806875-54807225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 159
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr6:2012674-2013017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr6:64431599-64431937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
7-360
               

               
Cow position:
               
chr6:32916267-32915915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chr6:17090245-17090610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
92, 129
               

               
Conread position:
               
7-369
               

               
Cow position:
               
chr6:46161872-46161504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-370
               

               
Cow position:
               
chr6:56842812-56843176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 153
               

               
Conread position:
               
7-370
               

               
Cow position:
               
chr6:56849654-56850032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
68, 169
               

               
Conread position:
               
7-370
               

               
Cow position:
               
chr6:63047229-63047597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
7-385
               

               
Cow position:
               
chr6:32867554-32867179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr6:53345448-53345836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 153
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr6:54647873-54647483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
7-397
               

               
Cow position:
               
chr6:25407752-25407341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr6:606914-607313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 277
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr6:34075678-34076081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr6:5609797-5609392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr6:8636928-8637331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr6:11169360-11169753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr6:16765740-16765343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr6:24004198-24004589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
8, 158
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr6:47540177-47540584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 160
               

               
Conread position:
               
7-400
               

               
Cow position:
               
chr6:5958363-5957974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 81
               

               
Conread position:
               
7-400
               

               
Cow position:
               
chr6:46205670-46206067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 153
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr6:1886995-1886602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 120
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr6:16410850-16411255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr6:24781912-24781488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr6:32125719-32126123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 159
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr6:10332456-10332033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 171
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr6:15305241-15305639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 150
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr6:11192798-11192395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr6:38770957-38771354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 34
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr6:60673201-60673455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
108, 146
               

               
Conread position:
               
8-278
               

               
Cow position:
               
chr6:36918514-36918246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr6:29077382-29077670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
116, 84
               

               
Conread position:
               
8-331
               

               
Cow position:
               
chr6:22877501-22877180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 150
               

               
Conread position:
               
8-333
               

               
Cow position:
               
chr6:56441277-56440945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 152
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chr6:28476830-28477190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 157
               

               
Conread position:
               
8-399
               

               
Cow position:
               
chr6:24961819-24962196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
8-414
               

               
Cow position:
               
chr6:49398964-49398552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 153
               

               
Conread position:
               
9-399
               

               
Cow position:
               
chr6:32210972-32210586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
13-352
               

               
Cow position:
               
chr6:58075886-58076231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 144
               

               
Conread position:
               
13-385
               

               
Cow position:
               
chr6:51674568-51674949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 155
               

               
Conread position:
               
13-398
               

               
Cow position:
               
chr6:15242511-15242886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
13-399
               

               
Cow position:
               
chr6:66532144-66531768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 118
               

               
Conread position:
               
13-400
               

               
Cow position:
               
chr6:17414795-17414393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 271
               

               
Conread position:
               
13-414
               

               
Cow position:
               
chr6:31535898-31535501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
14-270
               

               
Cow position:
               
chr6:37331623-37331882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 148
               

               
Conread position:
               
15-413
               

               
Cow position:
               
chr6:54867179-54867584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
15-414
               

               
Cow position:
               
chr6:36195874-36196278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 151
               

               
Conread position:
               
16-387
               

               
Cow position:
               
chr6:16634548-16634180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
191, 94
               

               
Conread position:
               
20-408
               

               
Cow position:
               
chr6:5672895-5673309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
21-397
               

               
Cow position:
               
chr6:44078183-44078569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
21-399
               

               
Cow position:
               
chr6:32269184-32268831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
59, 99
               

               
Conread position:
               
22-399
               

               
Cow position:
               
chr6:12629681-12630074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
22-408
               

               
Cow position:
               
chr6:54140484-54140858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 118
               

               
Conread position:
               
22-413
               

               
Cow position:
               
chr6:36470898-36470495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 140
               

               
Conread position:
               
23-272
               

               
Cow position:
               
chr6:26837716-26837462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
101, 70
               

               
Conread position:
               
23-408
               

               
Cow position:
               
chr6:10176630-10176240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 134
               

               
Conread position:
               
35-278
               

               
Cow position:
               
chr6:12116370-12116121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
35-399
               

               
Cow position:
               
chr6:50446079-50445713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 125
               

               
Conread position:
               
35-409
               

               
Cow position:
               
chr6:27852024-27851646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
86, 125
               

               
Conread position:
               
36-283
               

               
Cow position:
               
chr6:20255699-20255453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 82
               

               
Conread position:
               
36-414
               

               
Cow position:
               
chr6:32121592-32121975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
38-370
               

               
Cow position:
               
chr6:47625275-47624946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
38-390
               

               
Cow position:
               
chr6:20231142-20230788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
38-399
               

               
Cow position:
               
chr6:16699945-16700314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 116
               

               
Conread position:
               
38-400
               

               
Cow position:
               
chr6:60859620-60859251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 125
               

               
Conread position:
               
39-413
               

               
Cow position:
               
chr6:12337669-12338060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 121
               

               
Conread position:
               
41-270
               

               
Cow position:
               
chr6:6117870-6117629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
59, 228
               

               
Conread position:
               
41-375
               

               
Cow position:
               
chr6:12500543-12500883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 122
               

               
Conread position:
               
43-276
               

               
Cow position:
               
chr6:6167091-6167324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 124
               

               
Conread position:
               
43-390
               

               
Cow position:
               
chr6:48567654-48567308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
43-408
               

               
Cow position:
               
chr6:9008919-9008550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 85
               

               
Conread position:
               
44-399
               

               
Cow position:
               
chr6:46557747-46558110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
77, 108
               

               
Conread position:
               
45-272
               

               
Cow position:
               
chr6:60467718-60467947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
45-345
               

               
Cow position:
               
chr6:21587731-21587422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
76, 121
               

               
Conread position:
               
49-298
               

               
Cow position:
               
chr6:611262-611509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
168, 11
               

               
Conread position:
               
50-386
               

               
Cow position:
               
chr6:63272923-63272577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
52-365
               

               
Cow position:
               
chr6:31525749-31526060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 104
               

               
Conread position:
               
60-316
               

               
Cow position:
               
chr6:53401076-53401333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 104
               

               
Conread position:
               
60-408
               

               
Cow position:
               
chr6:15938159-15937795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 143
               

               
Conread position:
               
63-332
               

               
Cow position:
               
chr6:19508723-19508461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
63-395
               

               
Cow position:
               
chr6:54369188-54368855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
63-399
               

               
Cow position:
               
chr6:34196440-34196097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 92
               

               
Conread position:
               
68-365
               

               
Cow position:
               
chr6:642864-642550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
69-324
               

               
Cow position:
               
chr6:69500044-69500295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
69-369
               

               
Cow position:
               
chr6:57164141-57164445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
73-333
               

               
Cow position:
               
chr6:57411361-57411613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
74-324
               

               
Cow position:
               
chr6:21534778-21535027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
75-333
               

               
Cow position:
               
chr6:42961647-42961381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
77-365
               

               
Cow position:
               
chr6:57119205-57118923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
64, 89
               

               
Conread position:
               
78-218
               

               
Cow position:
               
chr6:60274500-60274359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
78-248
               

               
Cow position:
               
chr6:3591849-3592022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
80-415
               

               
Cow position:
               
chr6:50746702-50747067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
82-400
               

               
Cow position:
               
chr6:54365596-54365274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
82-408
               

               
Cow position:
               
chr6:47150506-47150854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
83-324
               

               
Cow position:
               
chr6:48281723-48281969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
86-333
               

               
Cow position:
               
chr6:35471795-35471539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
86-399
               

               
Cow position:
               
chr6:59688571-59688246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
92-290
               

               
Cow position:
               
chr6:35769745-35769541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
92-366
               

               
Cow position:
               
chr6:61515460-61515174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
93-385
               

               
Cow position:
               
chr6:54293849-54294141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr6:64449133-64449372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
103-399
               

               
Cow position:
               
chr6:3952273-3952571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
106-347
               

               
Cow position:
               
chr6:58732561-58732309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
106-395
               

               
Cow position:
               
chr6:40713748-40713454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
109-314
               

               
Cow position:
               
chr6:54132573-54132778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
110-392
               

               
Cow position:
               
chr6:38853903-38853613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
112-400
               

               
Cow position:
               
chr6:25773619-25773331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
114-312
               

               
Cow position:
               
chr6:62967125-62966922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
114-333
               

               
Cow position:
               
chr6:7103473-7103249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
114-347
               

               
Cow position:
               
chr6:2423511-2423740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
114-413
               

               
Cow position:
               
chr6:38207731-38207423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
115-279
               

               
Cow position:
               
chr6:11829929-11830102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
115-298
               

               
Cow position:
               
chr6:1002471-1002288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 162
               

               
Conread position:
               
115-333
               

               
Cow position:
               
chr6:40138942-40138736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
115-334
               

               
Cow position:
               
chr6:61113513-61113738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
115-397
               

               
Cow position:
               
chr6:34251512-34251245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
248, 27
               

               
Conread position:
               
115-399
               

               
Cow position:
               
chr6:9736876-9736603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
115-399
               

               
Cow position:
               
chr6:20098201-20097906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
115-414
               

               
Cow position:
               
chr6:41375516-41375840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
117-378
               

               
Cow position:
               
chr6:34475778-34475522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
117-399
               

               
Cow position:
               
chr6:41733392-41733679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
117-414
               

               
Cow position:
               
chr6:52478662-52478343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
121-333
               

               
Cow position:
               
chr6:54885144-54884930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
121-408
               

               
Cow position:
               
chr6:50983977-50984284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
121-413
               

               
Cow position:
               
chr6:38641268-38641564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
121-414
               

               
Cow position:
               
chr6:26915099-26915399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
123-333
               

               
Cow position:
               
chr6:59620440-59620649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr6:3929092-3929315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
123-399
               

               
Cow position:
               
chr6:130393-130108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
123-400
               

               
Cow position:
               
chr6:45160520-45160244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
123-413
               

               
Cow position:
               
chr6:38614595-38614886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
124-316
               

               
Cow position:
               
chr6:59302054-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
124-334
               

               
Cow position:
               
chr6:20605706-20605917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
126-324
               

               
Cow position:
               
chr6:13040228-13040428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
126-395
               

               
Cow position:
               
chr6:49685361-49685634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
126-408
               

               
Cow position:
               
chr6:66874136-66874413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
126-413
               

               
Cow position:
               
chr6:19401634-19401911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
126-414
               

               
Cow position:
               
chr6:4383267-4383547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
126-414
               

               
Cow position:
               
chr6:24468616-24468328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
127-289
               

               
Cow position:
               
chr6:3719233-3719062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
127-289
               

               
Cow position:
               
chr6:50640607-50640770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr6:14201473-14201681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
127-374
               

               
Cow position:
               
chr6:65904492-65904248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
127-392
               

               
Cow position:
               
chr6:16103427-16103150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
127-392
               

               
Cow position:
               
chr6:53710893-53711161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
127-392
               

               
Cow position:
               
chr6:60350524-60350246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
127-408
               

               
Cow position:
               
chr6:46865824-46865530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
127-413
               

               
Cow position:
               
chr6:65903841-65903557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
127-414
               

               
Cow position:
               
chr6:21542095-21542391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
130-316
               

               
Cow position:
               
chr6:51398579-51398764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
130-333
               

               
Cow position:
               
chr6:388949-389150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
130-333
               

               
Cow position:
               
chr6:21110749-21110945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 5
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr6:7824541-7824760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
130-349
               

               
Cow position:
               
chr6:66453580-66453798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr6:49002946-49002711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
130-399
               

               
Cow position:
               
chr6:52248354-52248079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr6:23248184-23247924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
131-399
               

               
Cow position:
               
chr6:27110368-27110651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
131-413
               

               
Cow position:
               
chr6:68049215-68049498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
133-414
               

               
Cow position:
               
chr6:53651822-53652108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
135-318
               

               
Cow position:
               
chr6:5462264-5462087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr6:7694569-7694368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr6:8965874-8966071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr6:9026301-9026498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
135-360
               

               
Cow position:
               
chr6:242598-242820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
135-369
               

               
Cow position:
               
chr6:6731048-6731282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
135-369
               

               
Cow position:
               
chr6:66433732-66433957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
108, 29
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr6:48344112-48344351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
135-380
               

               
Cow position:
               
chr6:10635961-10636203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
179, 21
               

               
Conread position:
               
135-385
               

               
Cow position:
               
chr6:53460787-53460536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-395
               

               
Cow position:
               
chr6:34031452-34031710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
192, 21
               

               
Conread position:
               
135-398
               

               
Cow position:
               
chr6:38440966-38441227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
135-399
               

               
Cow position:
               
chr6:44194761-44194496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-399
               

               
Cow position:
               
chr6:45065222-45064964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
135-400
               

               
Cow position:
               
chr6:36202612-36202875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
135-400
               

               
Cow position:
               
chr6:67304586-67304859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
135-411
               

               
Cow position:
               
chr6:60442203-60442479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
135-414
               

               
Cow position:
               
chr6:16746124-16746411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
135-414
               

               
Cow position:
               
chr6:28977247-28976972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
99, 84
               

               
Conread position:
               
135-414
               

               
Cow position:
               
chr6:46860383-46860099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
136-399
               

               
Cow position:
               
chr6:15301032-15300776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
137-399
               

               
Cow position:
               
chr6:62324776-62325045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
138-352
               

               
Cow position:
               
chr6:54864879-54864668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
138-390
               

               
Cow position:
               
chr6:7539360-7539619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr6:15923208-15923028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr6:59015773-59015587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
140-325
               

               
Cow position:
               
chr6:50271305-50271124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
140-365
               

               
Cow position:
               
chr6:24515404-24515182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chr6:53139140-53138899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-389
               

               
Cow position:
               
chr6:46400616-46400370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
192, 16
               

               
Conread position:
               
140-399
               

               
Cow position:
               
chr6:17997526-17997266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
140-408
               

               
Cow position:
               
chr6:7190330-7190057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
140-413
               

               
Cow position:
               
chr6:57405335-57405058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
140-413
               

               
Cow position:
               
chr6:67950748-67951022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
193, 16
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chr6:67456493-67456785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
143-326
               

               
Cow position:
               
chr6:7989621-7989436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
144-399
               

               
Cow position:
               
chr6:61137158-61137428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 138
               

               
Conread position:
               
144-400
               

               
Cow position:
               
chr6:6460335-6460596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
144-414
               

               
Cow position:
               
chr6:31260780-31261062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
145-349
               

               
Cow position:
               
chr6:6098488-6098284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr6:5114254-5113982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
146-397
               

               
Cow position:
               
chr6:20157120-20157384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
147-300
               

               
Cow position:
               
chr6:89113-88957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
147-318
               

               
Cow position:
               
chr6:51463820-51463647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
148-371
               

               
Cow position:
               
chr6:66131105-66131327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
186, 8
               

               
Conread position:
               
148-396
               

               
Cow position:
               
chr6:48425524-48425274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
149-397
               

               
Cow position:
               
chr6:14850917-14850669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
149-398
               

               
Cow position:
               
chr6:52025857-52025598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
71, 7
               

               
Conread position:
               
150-327
               

               
Cow position:
               
chr6:46245524-46245343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
152-373
               

               
Cow position:
               
chr6:30826237-30826010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 139
               

               
Conread position:
               
154-352
               

               
Cow position:
               
chr6:16191468-16191676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
155-355
               

               
Cow position:
               
chr6:415898-416104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
156-300
               

               
Cow position:
               
chr6:21812533-21812678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
156-318
               

               
Cow position:
               
chr6:36011498-36011655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
156-399
               

               
Cow position:
               
chr6:53731324-53731577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
64, 122
               

               
Conread position:
               
157-385
               

               
Cow position:
               
chr6:10400091-10399866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
176, 63
               

               
Conread position:
               
157-415
               

               
Cow position:
               
chr6:16423503-16423771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr6:33276844-33277040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 122
               

               
Conread position:
               
158-390
               

               
Cow position:
               
chr6:52412659-52412905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
62, 132
               

               
Conread position:
               
158-400
               

               
Cow position:
               
chr6:48187776-48187529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
63, 130
               

               
Conread position:
               
158-408
               

               
Cow position:
               
chr6:19695611-19695871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 103
               

               
Conread position:
               
158-413
               

               
Cow position:
               
chr6:12092179-12091926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
174, 60
               

               
Conread position:
               
158-414
               

               
Cow position:
               
chr6:37467734-37467474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
158-415
               

               
Cow position:
               
chr6:63720004-63720269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
177, 115
               

               
Conread position:
               
159-349
               

               
Cow position:
               
chr6:59069822-59069627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
160-365
               

               
Cow position:
               
chr6:21062076-21061874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
160-399
               

               
Cow position:
               
chr6:28318216-28318452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
160-408
               

               
Cow position:
               
chr6:53519816-53519562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
160-413
               

               
Cow position:
               
chr6:60239585-60239328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
161-392
               

               
Cow position:
               
chr6:37603331-37603548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
161-408
               

               
Cow position:
               
chr6:37149002-37149251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
162-408
               

               
Cow position:
               
chr6:47355633-47355885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
163-413
               

               
Cow position:
               
chr6:8788227-8787970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 85
               

               
Conread position:
               
164-398
               

               
Cow position:
               
chr6:60819328-60819565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
165-408
               

               
Cow position:
               
chr6:47799110-47799355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
168, 61
               

               
Conread position:
               
170-408
               

               
Cow position:
               
chr6:12668921-12669161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 119
               

               
Conread position:
               
171-414
               

               
Cow position:
               
chr6:47574723-47574974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 107
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr6:18968952-18968734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
160, 28
               

               
Conread position:
               
178-408
               

               
Cow position:
               
chr6:59104433-59104661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
178-413
               

               
Cow position:
               
chr6:9838987-9839239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
178-414
               

               
Cow position:
               
chr6:8125157-8125394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
181-408
               

               
Cow position:
               
chr6:12543107-12542868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
181-413
               

               
Cow position:
               
chr6:35993405-35993651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
183-396
               

               
Cow position:
               
chr6:54287910-54288121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
183-413
               

               
Cow position:
               
chr6:65264705-65264475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
184-385
               

               
Cow position:
               
chr6:11246595-11246805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
184-414
               

               
Cow position:
               
chr6:53453599-53453830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
189-397
               

               
Cow position:
               
chr6:44984162-44984381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
190-399
               

               
Cow position:
               
chr6:59108779-59108998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
191-400
               

               
Cow position:
               
chr6:54492621-54492402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
199-408
               

               
Cow position:
               
chr6:57298866-57299077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
134, 75
               

               
Conread position:
               
214-413
               

               
Cow position:
               
chr6:38609833-38610035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
216-398
               

               
Cow position:
               
chr6:60739882-60740066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
117, 56
               

               
Conread position:
               
217-396
               

               
Cow position:
               
chr6:19351286-19351106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
116, 56
               

               
Conread position:
               
218-408
               

               
Cow position:
               
chr6:4692111-4691913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 56
               

               
Conread position:
               
218-414
               

               
Cow position:
               
chr6:19264626-19264431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
115, 9
               

               
Conread position:
               
224-397
               

               
Cow position:
               
chr6:17313609-17313786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
225-400
               

               
Cow position:
               
chr6:50467011-50467189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 49
               

               
Conread position:
               
225-415
               

               
Cow position:
               
chr6:49694255-49694448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chr6:10225761-10225594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
108, 47
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chr6:43135066-43134886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
232-408
               

               
Cow position:
               
chr6:12845262-12845442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
57, 122
               
Show alignments to all cow chromosomes.