Cow genome map

Conread name: rsug18_k19.y1

Conread position: 343-551
Cow position: chr12:29057328-29057536 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 5

Conread position: 345-479
Cow position: chr12:43354183-43354052 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 345-483
Cow position: chr12:15173763-15173902 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 345-500
Cow position: chr12:13911641-13911477 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 345-531
Cow position: chr12:10834184-10834009 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 345-532
Cow position: chr12:5635513-5635329 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 50, 140

Conread position: 345-532
Cow position: chr12:29966047-29966228 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 34

Conread position: 345-532
Cow position: chr12:42181189-42181005 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 50, 140

Conread position: 345-533
Cow position: chr12:40200641-40200821 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 346-551
Cow position: chr12:14222921-14223129 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 7, 140

Conread position: 348-473
Cow position: chr12:42174360-42174485 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 46, 54

Conread position: 348-479
Cow position: chr12:4797243-4797375 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 348-483
Cow position: chr12:3880037-3879901 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 348-483
Cow position: chr12:4793140-4793276 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 348-483
Cow position: chr12:9914732-9914868 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 348-483
Cow position: chr12:15700021-15700159 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 91

Conread position: 348-483
Cow position: chr12:41474032-41474168 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 348-484
Cow position: chr12:18103666-18103532 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 348-489
Cow position: chr12:35368585-35368727 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 348-491
Cow position: chr12:7977983-7978124 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 348-500
Cow position: chr12:4719890-4720043 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 348-505
Cow position: chr12:3950402-3950245 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 133

Conread position: 348-522
Cow position: chr12:7457600-7457428 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 167, 46

Conread position: 348-532
Cow position: chr12:6188171-6187986 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 128

Conread position: 348-532
Cow position: chr12:10827728-10827909 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 128

Conread position: 348-532
Cow position: chr12:10895610-10895427 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 47, 150

Conread position: 348-532
Cow position: chr12:21780105-21780287 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 133

Conread position: 348-532
Cow position: chr12:30662007-30661826 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 128

Conread position: 348-532
Cow position: chr12:33851304-33851479 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 348-532
Cow position: chr12:33976142-33976326 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 133

Conread position: 348-532
Cow position: chr12:37008760-37008587 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 87, 46

Conread position: 348-532
Cow position: chr12:40158079-40157905 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 348-532
Cow position: chr12:42966943-42967118 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 348-532
Cow position: chr12:47267366-47267185 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 47, 133

Conread position: 348-549
Cow position: chr12:3623637-3623835 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 162

Conread position: 348-551
Cow position: chr12:7110140-7110354 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 81

Conread position: 348-551
Cow position: chr12:10942230-10942440 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 348-551
Cow position: chr12:11587717-11587915 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 43, 150

Conread position: 348-551
Cow position: chr12:15050673-15050479 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 186, 46

Conread position: 348-551
Cow position: chr12:27563434-27563233 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 79

Conread position: 348-551
Cow position: chr12:31269097-31269304 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 348-551
Cow position: chr12:35771078-35770878 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 133

Conread position: 349-478
Cow position: chr12:7311324-7311455 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 349-498
Cow position: chr12:28257113-28256961 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 349-532
Cow position: chr12:31948058-31948235 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 105

Conread position: 349-532
Cow position: chr12:38126581-38126398 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 140

Conread position: 349-534
Cow position: chr12:25280559-25280377 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 131

Conread position: 350-532
Cow position: chr12:4596413-4596596 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 127, 44

Conread position: 352-483
Cow position: chr12:4866764-4866896 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 352-483
Cow position: chr12:17881808-17881940 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 352-483
Cow position: chr12:29779967-29779835 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 352-532
Cow position: chr12:13988316-13988497 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 352-533
Cow position: chr12:36501001-36500823 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 123

Conread position: 352-551
Cow position: chr12:42749387-42749589 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 117, 44

Conread position: 353-503
Cow position: chr12:5543845-5543696 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 41, 48

Conread position: 353-532
Cow position: chr12:36790864-36790690 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 132

Conread position: 354-479
Cow position: chr12:29483937-29483811 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 354-483
Cow position: chr12:9439502-9439373 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 74

Conread position: 354-484
Cow position: chr12:44733143-44733012 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 354-531
Cow position: chr12:19400867-19400694 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 109

Conread position: 354-532
Cow position: chr12:43974242-43974415 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 356-482
Cow position: chr12:11109706-11109832 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 9

Conread position: 359-483
Cow position: chr12:43854848-43854972 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 44

Conread position: 359-484
Cow position: chr12:25441594-25441721 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 88

Conread position: 359-497
Cow position: chr12:43474714-43474853 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 359-532
Cow position: chr12:15389025-15389193 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 122

Conread position: 359-532
Cow position: chr12:35310731-35310559 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 69

Conread position: 359-550
Cow position: chr12:26868859-26868671 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 36, 50

Conread position: 361-483
Cow position: chr12:3586074-3586197 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 362-551
Cow position: chr12:31841528-31841716 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 17

Conread position: 364-483
Cow position: chr12:42143119-42143238 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 39

Conread position: 364-532
Cow position: chr12:39150093-39149926 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 140

Conread position: 366-532
Cow position: chr12:25456369-25456544 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 368-535
Cow position: chr12:41159553-41159716 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 23, 33

Conread position: 369-531
Cow position: chr12:18996774-18996933 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 25, 115

Conread position: 370-498
Cow position: chr12:25596603-25596729 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 59

Conread position: 370-532
Cow position: chr12:29675177-29675016 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 118

Conread position: 370-551
Cow position: chr12:44542231-44542409 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 111

Conread position: 374-532
Cow position: chr12:16386488-16386332 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 118

Conread position: 374-533
Cow position: chr12:42944103-42944261 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 20, 122

Conread position: 374-551
Cow position: chr12:24397194-24397019 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 21, 52

Conread position: 383-532
Cow position: chr12:22752603-22752754 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 383-551
Cow position: chr12:3057065-3057235 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 93

Conread position: 385-533
Cow position: chr12:12699661-12699514 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 103

Conread position: 385-551
Cow position: chr12:34877812-34877984 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 5

Conread position: 386-533
Cow position: chr12:22047903-22048048 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 25, 10

Conread position: 390-531
Cow position: chr12:11106595-11106456 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 95, 0

Conread position: 390-532
Cow position: chr12:25814139-25814280 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 125, 95

Conread position: 390-551
Cow position: chr12:41317127-41316964 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 145, 113

Conread position: 391-533
Cow position: chr12:43619267-43619408 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 43, 36

Conread position: 409-551
Cow position: chr12:31276609-31276758 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 412-551
Cow position: chr12:42973380-42973518 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 19

Conread position: 413-532
Cow position: chr12:13995789-13995671 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 70

Conread position: 413-551
Cow position: chr12:27663985-27663844 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 5, 91

Show alignments to all cow chromosomes.