Cow genome map

Conread name: rsug18_k19.y1

Conread position: 332-533
Cow position:
Alignm length: 204
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 155

Conread position: 335-551
Cow position:
Alignm length: 222
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 24

Conread position: 338-483
Cow position:
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 68

Conread position: 342-482
Cow position:
Alignm length: 142
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 17

Conread position: 342-551
Cow position:
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 192, 54

Conread position: 344-511
Cow position:
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 87

Conread position: 345-478
Cow position:
Alignm length: 135
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 345-478
Cow position:
Alignm length: 135
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 345-493
Cow position:
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 64

Conread position: 345-503
Cow position:
Alignm length: 160
Alignm identity: 123
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 124

Conread position: 345-503
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 345-503
Cow position:
Alignm length: 162
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 345-532
Cow position:
Alignm length: 195
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 345-532
Cow position:
Alignm length: 189
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 143

Conread position: 345-532
Cow position:
Alignm length: 189
Alignm identity: 138
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 143

Conread position: 345-532
Cow position:
Alignm length: 190
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 345-533
Cow position:
Alignm length: 205
Alignm identity: 152
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 156

Conread position: 345-545
Cow position:
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 189, 49

Conread position: 345-551
Cow position:
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 156

Conread position: 346-479
Cow position:
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 346-551
Cow position:
Alignm length: 215
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 48

Conread position: 347-483
Cow position:
Alignm length: 138
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 347-532
Cow position:
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 143

Conread position: 348-477
Cow position:
Alignm length: 132
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 348-477
Cow position:
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 348-481
Cow position:
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 348-482
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 348-483
Cow position:
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 348-483
Cow position:
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 348-483
Cow position:
Alignm length: 138
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 62

Conread position: 348-483
Cow position:
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 348-483
Cow position:
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 86

Conread position: 348-483
Cow position:
Alignm length: 141
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 348-483
Cow position:
Alignm length: 136
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 348-483
Cow position:
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 348-485
Cow position:
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 348-495
Cow position:
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 133

Conread position: 348-495
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 348-498
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 348-499
Cow position:
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 46

Conread position: 348-504
Cow position:
Alignm length: 158
Alignm identity: 126
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 46, 72

Conread position: 348-517
Cow position:
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 78

Conread position: 348-530
Cow position:
Alignm length: 184
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 348-531
Cow position:
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 129

Conread position: 348-532
Cow position:
Alignm length: 186
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 137, 46

Conread position: 348-532
Cow position:
Alignm length: 186
Alignm identity: 141
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 55

Conread position: 348-532
Cow position:
Alignm length: 190
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 348-532
Cow position:
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 137

Conread position: 348-532
Cow position:
Alignm length: 185
Alignm identity: 138
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 348-532
Cow position:
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 137

Conread position: 348-532
Cow position:
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 144

Conread position: 348-532
Cow position:
Alignm length: 194
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 152

Conread position: 348-532
Cow position:
Alignm length: 186
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 137

Conread position: 348-532
Cow position:
Alignm length: 186
Alignm identity: 142
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 46, 31

Conread position: 348-532
Cow position:
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 148

Conread position: 348-532
Cow position:
Alignm length: 189
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 348-533
Cow position:
Alignm length: 187
Alignm identity: 141
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 46, 144

Conread position: 348-551
Cow position:
Alignm length: 207
Alignm identity: 149
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 46, 139

Conread position: 348-551
Cow position:
Alignm length: 209
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 154

Conread position: 348-551
Cow position:
Alignm length: 209
Alignm identity: 147
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 140

Conread position: 348-551
Cow position:
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 134

Conread position: 348-551
Cow position:
Alignm length: 206
Alignm identity: 161
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 47, 139

Conread position: 348-551
Cow position:
Alignm length: 206
Alignm identity: 153
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 31

Conread position: 348-551
Cow position:
Alignm length: 209
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 128

Conread position: 348-551
Cow position:
Alignm length: 205
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 188

Conread position: 349-475
Cow position:
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 349-479
Cow position:
Alignm length: 131
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 349-481
Cow position:
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 349-483
Cow position:
Alignm length: 137
Alignm identity: 113
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 73

Conread position: 349-493
Cow position:
Alignm length: 146
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 61, 45

Conread position: 349-493
Cow position:
Alignm length: 146
Alignm identity: 116
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 349-500
Cow position:
Alignm length: 154
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 349-503
Cow position:
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 349-530
Cow position:
Alignm length: 183
Alignm identity: 135
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 43, 139

Conread position: 349-532
Cow position:
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 83

Conread position: 349-532
Cow position:
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 5, 47

Conread position: 349-532
Cow position:
Alignm length: 186
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 148

Conread position: 349-551
Cow position:
Alignm length: 210
Alignm identity: 149
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 12, 55

Conread position: 349-551
Cow position:
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 88

Conread position: 349-551
Cow position:
Alignm length: 208
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 12, 136

Conread position: 350-533
Cow position:
Alignm length: 185
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 135

Conread position: 352-483
Cow position:
Alignm length: 133
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 352-532
Cow position:
Alignm length: 182
Alignm identity: 133
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 81, 42

Conread position: 352-532
Cow position:
Alignm length: 183
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 138

Conread position: 352-532
Cow position:
Alignm length: 181
Alignm identity: 134
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 352-532
Cow position:
Alignm length: 181
Alignm identity: 137
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 352-550
Cow position:
Alignm length: 205
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 151, 38

Conread position: 352-551
Cow position:
Alignm length: 203
Alignm identity: 142
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 6, 72

Conread position: 353-514
Cow position:
Alignm length: 164
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 353-532
Cow position:
Alignm length: 181
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 45, 53

Conread position: 354-483
Cow position:
Alignm length: 133
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 354-532
Cow position:
Alignm length: 182
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 120

Conread position: 354-532
Cow position:
Alignm length: 182
Alignm identity: 131
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 354-533
Cow position:
Alignm length: 183
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 77

Conread position: 354-551
Cow position:
Alignm length: 201
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 123

Conread position: 355-551
Cow position:
Alignm length: 197
Alignm identity: 138
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 356-533
Cow position:
Alignm length: 179
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 125

Conread position: 357-551
Cow position:
Alignm length: 200
Alignm identity: 148
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 37, 131

Conread position: 358-532
Cow position:
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 129

Conread position: 359-483
Cow position:
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 69

Conread position: 359-495
Cow position:
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 42

Conread position: 359-532
Cow position:
Alignm length: 175
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 133

Conread position: 359-532
Cow position:
Alignm length: 180
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 134

Conread position: 359-532
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 155

Conread position: 359-532
Cow position:
Alignm length: 175
Alignm identity: 130
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 35, 129

Conread position: 359-533
Cow position:
Alignm length: 175
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 359-551
Cow position:
Alignm length: 194
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 122

Conread position: 360-493
Cow position:
Alignm length: 135
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 360-532
Cow position:
Alignm length: 174
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 121

Conread position: 363-493
Cow position:
Alignm length: 132
Alignm identity: 104
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 363-551
Cow position:
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 171, 27

Conread position: 366-532
Cow position:
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 368-483
Cow position:
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 368-503
Cow position:
Alignm length: 137
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 368-550
Cow position:
Alignm length: 188
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 368-551
Cow position:
Alignm length: 186
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 120

Conread position: 369-478
Cow position:
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 369-551
Cow position:
Alignm length: 188
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 117

Conread position: 369-551
Cow position:
Alignm length: 193
Alignm identity: 139
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 121

Conread position: 370-532
Cow position:
Alignm length: 164
Alignm identity: 130
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 24, 116

Conread position: 372-532
Cow position:
Alignm length: 163
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 117

Conread position: 373-500
Cow position:
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 374-478
Cow position:
Alignm length: 106
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 375-543
Cow position:
Alignm length: 170
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 18, 113

Conread position: 376-532
Cow position:
Alignm length: 162
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 111

Conread position: 379-532
Cow position:
Alignm length: 155
Alignm identity: 120
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 379-532
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 106

Conread position: 382-532
Cow position:
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 382-533
Cow position:
Alignm length: 153
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 106

Conread position: 382-551
Cow position:
Alignm length: 178
Alignm identity: 133
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 383-532
Cow position:
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 384-503
Cow position:
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 384-532
Cow position:
Alignm length: 149
Alignm identity: 121
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 6, 0

Conread position: 384-551
Cow position:
Alignm length: 174
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 93

Conread position: 385-532
Cow position:
Alignm length: 148
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 385-551
Cow position:
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 147, 5

Conread position: 386-532
Cow position:
Alignm length: 148
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 390-532
Cow position:
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 390-532
Cow position:
Alignm length: 148
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 392-502
Cow position:
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 392-551
Cow position:
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 393-551
Cow position:
Alignm length: 163
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 141, 90

Conread position: 394-551
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 140, 91

Conread position: 395-551
Cow position:
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 40

Conread position: 396-530
Cow position:
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 402-532
Cow position:
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 403-551
Cow position:
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 127, 84

Conread position: 405-493
Cow position:
Alignm length: 89
Alignm identity: 76
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.