Cow genome map

Conread name: rsug18_k19.y1

Conread position: 328-532
Cow position: chr20:7417163-7416956 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 345-483
Cow position: chr20:6096474-6096335 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 345-483
Cow position: chr20:19751328-19751467 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 345-531
Cow position: chr20:22959325-22959142 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 49, 19

Conread position: 345-532
Cow position: chr20:11008191-11008377 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 149

Conread position: 345-551
Cow position: chr20:14282941-14283150 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 46, 83

Conread position: 346-487
Cow position: chr20:12995983-12995842 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 48, 85

Conread position: 346-518
Cow position: chr20:13876680-13876518 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 348-473
Cow position: chr20:33438956-33438830 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 348-474
Cow position: chr20:36040498-36040626 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 348-478
Cow position: chr20:9433611-9433742 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 45, 105

Conread position: 348-478
Cow position: chr20:11359607-11359477 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 35

Conread position: 348-482
Cow position: chr20:16492096-16492232 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 115

Conread position: 348-483
Cow position: chr20:29805634-29805499 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 46, 90

Conread position: 348-485
Cow position: chr20:14917309-14917447 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 348-493
Cow position: chr20:20967345-20967491 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 123
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 348-498
Cow position: chr20:35727906-35727755 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 348-503
Cow position: chr20:15589065-15589223 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 49

Conread position: 348-504
Cow position: chr20:9537163-9537313 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 348-514
Cow position: chr20:23870794-23870629 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 29

Conread position: 348-532
Cow position: chr20:1139743-1139561 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 47, 70

Conread position: 348-532
Cow position: chr20:1824606-1824427 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 30, 129

Conread position: 348-532
Cow position: chr20:4945227-4945046 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 65

Conread position: 348-532
Cow position: chr20:5364954-5365133 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 348-532
Cow position: chr20:6054485-6054303 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 81

Conread position: 348-532
Cow position: chr20:10246029-10245852 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 46, 81

Conread position: 348-532
Cow position: chr20:12126280-12126097 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 140

Conread position: 348-532
Cow position: chr20:16941263-16941078 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 158, 0

Conread position: 348-532
Cow position: chr20:17251742-17251923 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 37

Conread position: 348-532
Cow position: chr20:20125008-20124827 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 54

Conread position: 348-532
Cow position: chr20:20898566-20898385 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 140

Conread position: 348-532
Cow position: chr20:38847213-38847023 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 348-533
Cow position: chr20:29845075-29845260 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 115

Conread position: 348-533
Cow position: chr20:35741792-35741976 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 154

Conread position: 348-533
Cow position: chr20:40781985-40782172 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 348-549
Cow position: chr20:24711864-24712065 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 46, 157

Conread position: 348-551
Cow position: chr20:5703495-5703699 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 46, 139

Conread position: 348-551
Cow position: chr20:8679643-8679433 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 35, 142

Conread position: 348-551
Cow position: chr20:12205704-12205517 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 348-551
Cow position: chr20:23590723-23590523 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 42, 0

Conread position: 348-551
Cow position: chr20:33067336-33067132 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 46, 114

Conread position: 349-481
Cow position: chr20:14490275-14490404 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 349-483
Cow position: chr20:40157925-40158060 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 349-503
Cow position: chr20:23064805-23064655 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 349-533
Cow position: chr20:354872-354693 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 349-537
Cow position: chr20:6248577-6248389 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 13, 140

Conread position: 349-551
Cow position: chr20:5950618-5950413 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 43, 149

Conread position: 350-532
Cow position: chr20:28594312-28594497 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 44, 56

Conread position: 352-482
Cow position: chr20:361158-361031 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 352-483
Cow position: chr20:39415778-39415910 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 352-489
Cow position: chr20:40127316-40127177 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 352-533
Cow position: chr20:5814594-5814774 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 52

Conread position: 352-551
Cow position: chr20:34097928-34097721 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 28, 0

Conread position: 354-483
Cow position: chr20:4332159-4332294 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 354-504
Cow position: chr20:22978357-22978508 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 354-509
Cow position: chr20:21815591-21815747 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 354-532
Cow position: chr20:14433392-14433216 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 110

Conread position: 354-532
Cow position: chr20:14897767-14897944 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 151

Conread position: 354-532
Cow position: chr20:34083747-34083925 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 40, 25

Conread position: 357-503
Cow position: chr20:7709748-7709600 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 359-522
Cow position: chr20:34202670-34202834 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 0

Conread position: 359-530
Cow position: chr20:34251638-34251467 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 69

Conread position: 359-532
Cow position: chr20:10188310-10188479 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 72

Conread position: 359-532
Cow position: chr20:29990412-29990241 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 35, 59

Conread position: 359-550
Cow position: chr20:20739249-20739048 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 8

Conread position: 360-532
Cow position: chr20:23936148-23935974 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 35, 71

Conread position: 360-532
Cow position: chr20:30639747-30639574 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 360-532
Cow position: chr20:36806557-36806725 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 116

Conread position: 360-551
Cow position: chr20:28249217-28249410 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 7

Conread position: 361-532
Cow position: chr20:2743100-2742930 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 120

Conread position: 361-545
Cow position: chr20:20099564-20099380 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 30, 149

Conread position: 362-537
Cow position: chr20:8429785-8429952 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 33, 85

Conread position: 365-479
Cow position: chr20:16496931-16496815 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 365-549
Cow position: chr20:11920689-11920508 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 53

Conread position: 368-481
Cow position: chr20:35442238-35442123 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 368-507
Cow position: chr20:2316381-2316241 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 368-531
Cow position: chr20:37357900-37358062 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 26, 120

Conread position: 369-551
Cow position: chr20:33076778-33076594 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 91

Conread position: 370-532
Cow position: chr20:28935592-28935438 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 13

Conread position: 374-499
Cow position: chr20:30477459-30477585 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 374-532
Cow position: chr20:9034166-9034012 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 71

Conread position: 374-532
Cow position: chr20:31927412-31927256 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 20, 100

Conread position: 379-503
Cow position: chr20:30938987-30939109 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 6

Conread position: 379-509
Cow position: chr20:5385498-5385361 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 379-532
Cow position: chr20:5078329-5078481 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 11

Conread position: 379-532
Cow position: chr20:33359418-33359265 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 143

Conread position: 379-551
Cow position: chr20:2798935-2798768 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 96, 0

Conread position: 379-551
Cow position: chr20:19201586-19201761 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 13, 109

Conread position: 384-532
Cow position: chr20:40442404-40442259 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 17

Conread position: 385-532
Cow position: chr20:17544687-17544831 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 388-551
Cow position: chr20:8442391-8442228 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 8

Conread position: 390-483
Cow position: chr20:34847973-34848066 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 390-526
Cow position: chr20:35310390-35310528 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 88

Conread position: 390-532
Cow position: chr20:15515373-15515226 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 115, 0

Conread position: 390-532
Cow position: chr20:25474620-25474760 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 390-551
Cow position: chr20:27323333-27323496 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 144, 114

Conread position: 413-551
Cow position: chr20:18500617-18500757 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 121, 71

Show alignments to all cow chromosomes.