Cow genome map
| Conread name: | rsug18_k19.y1 |
| Conread position: | 320-504 |
| Cow position: | chr23:27789975-27790156 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 340-533 |
| Cow position: | chr23:18739488-18739296 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 342-532 |
| Cow position: | chr23:34314976-34314789 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 342-533 |
| Cow position: | chr23:57186-56990 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 345-483 |
| Cow position: | chr23:3244488-3244349 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 345-494 |
| Cow position: | chr23:1398058-1397908 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 345-532 |
| Cow position: | chr23:306503-306689 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 143 |
| Conread position: | 345-532 |
| Cow position: | chr23:307436-307622 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 143 |
| Conread position: | 346-479 |
| Cow position: | chr23:21336502-21336368 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 348-473 |
| Cow position: | chr23:11224839-11224965 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-479 |
| Cow position: | chr23:12091377-12091241 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-479 |
| Cow position: | chr23:30950938-30951071 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-481 |
| Cow position: | chr23:10554025-10553891 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-482 |
| Cow position: | chr23:14569517-14569382 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-483 |
| Cow position: | chr23:4104382-4104515 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-483 |
| Cow position: | chr23:6994999-6994863 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 348-483 |
| Cow position: | chr23:7574637-7574505 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 348-483 |
| Cow position: | chr23:13946022-13946157 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 348-493 |
| Cow position: | chr23:13137952-13137806 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 348-503 |
| Cow position: | chr23:35247351-35247506 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 348-504 |
| Cow position: | chr23:4877344-4877501 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-531 |
| Cow position: | chr23:34356625-34356804 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 348-532 |
| Cow position: | chr23:1655878-1656058 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 348-532 |
| Cow position: | chr23:3244930-3244751 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 348-532 |
| Cow position: | chr23:26283708-26283893 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 348-532 |
| Cow position: | chr23:35656396-35656573 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 348-533 |
| Cow position: | chr23:16582926-16582742 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 43, 150 |
| Conread position: | 348-542 |
| Cow position: | chr23:21309428-21309236 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 348-545 |
| Cow position: | chr23:4968540-4968350 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 348-551 |
| Cow position: | chr23:38005-38217 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 146 |
| Conread position: | 348-551 |
| Cow position: | chr23:4972750-4972952 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 348-551 |
| Cow position: | chr23:18416067-18415870 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 80 |
| Conread position: | 348-551 |
| Cow position: | chr23:24701096-24700889 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 348-551 |
| Cow position: | chr23:26794929-26794726 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 348-551 |
| Cow position: | chr23:28529964-28529764 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 186, 48 |
| Conread position: | 349-483 |
| Cow position: | chr23:16700057-16699922 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 349-531 |
| Cow position: | chr23:1759231-1759410 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 349-532 |
| Cow position: | chr23:5436658-5436476 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 137 |
| Conread position: | 349-551 |
| Cow position: | chr23:5437019-5436814 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 350-532 |
| Cow position: | chr23:32621269-32621452 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 44, 140 |
| Conread position: | 352-483 |
| Cow position: | chr23:14895686-14895554 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 352-493 |
| Cow position: | chr23:16447699-16447559 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 352-532 |
| Cow position: | chr23:799691-799502 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 146 |
| Conread position: | 353-484 |
| Cow position: | chr23:13674043-13673911 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 353-501 |
| Cow position: | chr23:5686633-5686484 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 354-478 |
| Cow position: | chr23:4864421-4864546 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 354-478 |
| Cow position: | chr23:41348634-41348509 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 354-532 |
| Cow position: | chr23:187168-187343 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 354-532 |
| Cow position: | chr23:2470992-2471169 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 40, 132 |
| Conread position: | 359-483 |
| Cow position: | chr23:3835600-3835476 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 359-532 |
| Cow position: | chr23:1701166-1701338 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 359-532 |
| Cow position: | chr23:12405825-12405657 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 359-532 |
| Cow position: | chr23:24779548-24779376 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 359-533 |
| Cow position: | chr23:5617568-5617740 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 117 |
| Conread position: | 359-533 |
| Cow position: | chr23:8698415-8698590 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 359-551 |
| Cow position: | chr23:26986276-26986085 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 360-551 |
| Cow position: | chr23:20557849-20557655 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 360-551 |
| Cow position: | chr23:35929946-35930135 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 125 |
| Conread position: | 362-549 |
| Cow position: | chr23:1188908-1188735 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 172, 23 |
| Conread position: | 364-482 |
| Cow position: | chr23:38845598-38845718 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 364-532 |
| Cow position: | chr23:5314527-5314694 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 89 |
| Conread position: | 365-531 |
| Cow position: | chr23:35512263-35512094 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 366-485 |
| Cow position: | chr23:5514526-5514646 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 366-532 |
| Cow position: | chr23:4343483-4343648 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 368-479 |
| Cow position: | chr23:25726202-25726314 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 368-532 |
| Cow position: | chr23:1798114-1798277 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 118 |
| Conread position: | 372-550 |
| Cow position: | chr23:30170779-30170607 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 374-551 |
| Cow position: | chr23:19179366-19179182 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 376-526 |
| Cow position: | chr23:3979751-3979601 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 379-499 |
| Cow position: | chr23:3484287-3484406 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 382-532 |
| Cow position: | chr23:1480657-1480806 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 104 |
| Conread position: | 383-498 |
| Cow position: | chr23:580802-580686 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 383-498 |
| Cow position: | chr23:35254145-35254031 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 384-532 |
| Cow position: | chr23:30617459-30617312 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 386-551 |
| Cow position: | chr23:35239373-35239538 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 388-532 |
| Cow position: | chr23:4291379-4291521 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 390-532 |
| Cow position: | chr23:10675878-10676018 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 390-533 |
| Cow position: | chr23:4416261-4416120 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 396-504 |
| Cow position: | chr23:33360871-33360763 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-530 |
| Cow position: | chr23:35527114-35527244 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 402-499 |
| Cow position: | chr23:38117996-38118093 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 402-532 |
| Cow position: | chr23:3983153-3983025 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 84 |
| Conread position: | 405-551 |
| Cow position: | chr23:10844597-10844746 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 83 |
Show alignments to all cow chromosomes.