Cow genome map
| Conread name: | rsug18_k19.y1 |
| Conread position: | 328-532 |
| Cow position: | chr24:32230568-32230367 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 345-476 |
| Cow position: | chr24:29679356-29679227 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 347-533 |
| Cow position: | chr24:13888660-13888843 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 348-479 |
| Cow position: | chr24:20969705-20969575 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 348-483 |
| Cow position: | chr24:28470723-28470587 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 348-491 |
| Cow position: | chr24:7390376-7390236 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 348-508 |
| Cow position: | chr24:19800804-19800960 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 348-532 |
| Cow position: | chr24:16645363-16645181 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 348-532 |
| Cow position: | chr24:39523492-39523313 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 348-532 |
| Cow position: | chr24:39911077-39910894 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 108 |
| Conread position: | 348-532 |
| Cow position: | chr24:44987418-44987235 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 348-549 |
| Cow position: | chr24:25194222-25194424 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 348-550 |
| Cow position: | chr24:10300040-10300233 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 348-551 |
| Cow position: | chr24:16089184-16089389 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 348-551 |
| Cow position: | chr24:19658501-19658694 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 348-551 |
| Cow position: | chr24:26001344-26001547 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 133 |
| Conread position: | 348-551 |
| Cow position: | chr24:38006751-38006552 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 349-478 |
| Cow position: | chr24:27290829-27290959 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 349-483 |
| Cow position: | chr24:34742710-34742846 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 349-497 |
| Cow position: | chr24:34008615-34008466 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 349-532 |
| Cow position: | chr24:19000004-19000180 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 349-532 |
| Cow position: | chr24:19637540-19637723 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 349-532 |
| Cow position: | chr24:34272767-34272956 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 349-551 |
| Cow position: | chr24:19623813-19624025 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 350-551 |
| Cow position: | chr24:23046937-23046735 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 352-483 |
| Cow position: | chr24:18614962-18615093 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 352-491 |
| Cow position: | chr24:27418137-27418003 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 352-503 |
| Cow position: | chr24:43200309-43200163 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 352-517 |
| Cow position: | chr24:6102791-6102954 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 352-532 |
| Cow position: | chr24:25263779-25263599 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 352-551 |
| Cow position: | chr24:15861637-15861431 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 157 |
| Conread position: | 353-483 |
| Cow position: | chr24:41412332-41412204 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 353-532 |
| Cow position: | chr24:35576573-35576398 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 354-533 |
| Cow position: | chr24:41980696-41980522 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 354-551 |
| Cow position: | chr24:16994845-16995038 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 354-551 |
| Cow position: | chr24:20225703-20225904 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 40 |
| Conread position: | 356-531 |
| Cow position: | chr24:36286535-36286704 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 356-533 |
| Cow position: | chr24:22567068-22567244 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 357-532 |
| Cow position: | chr24:21606707-21606539 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 359-511 |
| Cow position: | chr24:5143991-5143837 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 359-531 |
| Cow position: | chr24:17832847-17832684 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 359-532 |
| Cow position: | chr24:27040016-27040187 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 359-533 |
| Cow position: | chr24:14550763-14550928 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 359-533 |
| Cow position: | chr24:26880721-26880893 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 50 |
| Conread position: | 359-534 |
| Cow position: | chr24:36711162-36711336 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 146 |
| Conread position: | 360-478 |
| Cow position: | chr24:4724938-4725056 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 360-525 |
| Cow position: | chr24:22647374-22647205 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 360-551 |
| Cow position: | chr24:17752143-17751948 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 102 |
| Conread position: | 361-531 |
| Cow position: | chr24:5152493-5152662 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 361-549 |
| Cow position: | chr24:390074-390258 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 171, 123 |
| Conread position: | 362-551 |
| Cow position: | chr24:27066201-27066390 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 363-532 |
| Cow position: | chr24:32891072-32890910 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 122 |
| Conread position: | 364-551 |
| Cow position: | chr24:18874848-18874660 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 365-533 |
| Cow position: | chr24:16640883-16641051 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 29, 124 |
| Conread position: | 366-532 |
| Cow position: | chr24:22419935-22420100 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 127 |
| Conread position: | 368-531 |
| Cow position: | chr24:29677939-29677774 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 369-551 |
| Cow position: | chr24:2261645-2261830 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 135 |
| Conread position: | 370-483 |
| Cow position: | chr24:27810137-27810250 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 370-551 |
| Cow position: | chr24:31383099-31383268 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 375-532 |
| Cow position: | chr24:7113206-7113370 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 375-551 |
| Cow position: | chr24:161987-162166 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 129 |
| Conread position: | 376-483 |
| Cow position: | chr24:22235452-22235560 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 379-508 |
| Cow position: | chr24:21623211-21623339 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 379-532 |
| Cow position: | chr24:12120884-12121036 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 382-503 |
| Cow position: | chr24:256017-256139 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 382-532 |
| Cow position: | chr24:4635177-4635028 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 383-532 |
| Cow position: | chr24:11736078-11735933 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 383-532 |
| Cow position: | chr24:39218560-39218406 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 383-550 |
| Cow position: | chr24:25142601-25142776 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 383-551 |
| Cow position: | chr24:42008014-42008179 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 384-502 |
| Cow position: | chr24:37252150-37252270 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 384-532 |
| Cow position: | chr24:18702390-18702537 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 384-532 |
| Cow position: | chr24:18810824-18810971 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 394-532 |
| Cow position: | chr24:25947858-25947722 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 402-551 |
| Cow position: | chr24:27149395-27149542 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 132, 85 |
| Conread position: | 410-551 |
| Cow position: | chr24:38428093-38427950 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 124, 77 |
| Conread position: | 413-551 |
| Cow position: | chr24:38693856-38693717 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 78 |
Show alignments to all cow chromosomes.