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Cow genome map

           
Conread name:
           
rsug23_m4.y1
        

               
Conread position:
               
69-416
               

               
Cow position:
               
chr1:55229710-55230046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
81-478
               

               
Cow position:
               
chr1:101822763-101822380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
92-494
               

               
Cow position:
               
chr1:5597452-5597062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
95-456
               

               
Cow position:
               
chr1:52052953-52052607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
97-416
               

               
Cow position:
               
chr1:43358264-43357941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
98-450
               

               
Cow position:
               
chr1:44125888-44125534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
99-422
               

               
Cow position:
               
chr1:89076882-89076557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
108-331
               

               
Cow position:
               
chr1:68282559-68282787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 203
               

               
Conread position:
               
109-418
               

               
Cow position:
               
chr1:18937070-18936765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
77, 185
               

               
Conread position:
               
109-494
               

               
Cow position:
               
chr1:81515003-81515389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 155
               

               
Conread position:
               
111-418
               

               
Cow position:
               
chr1:16962249-16961938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 206
               

               
Conread position:
               
112-309
               

               
Cow position:
               
chr1:4293829-4294020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
175, 75
               

               
Conread position:
               
113-297
               

               
Cow position:
               
chr1:22628870-22628685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr1:89349745-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
113-479
               

               
Cow position:
               
chr1:81613153-81613524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 192
               

               
Conread position:
               
113-494
               

               
Cow position:
               
chr1:54258335-54258719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 73
               

               
Conread position:
               
113-494
               

               
Cow position:
               
chr1:78091804-78092190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
114-449
               

               
Cow position:
               
chr1:83583169-83582830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 134
               

               
Conread position:
               
114-478
               

               
Cow position:
               
chr1:89381047-89381410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 58
               

               
Conread position:
               
114-488
               

               
Cow position:
               
chr1:72035160-72034776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
114-494
               

               
Cow position:
               
chr1:50931200-50930830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 58
               

               
Conread position:
               
115-414
               

               
Cow position:
               
chr1:1916465-1916159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
162, 70
               

               
Conread position:
               
115-416
               

               
Cow position:
               
chr1:88618363-88618666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr1:70930581-70930880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
115-445
               

               
Cow position:
               
chr1:91800835-91800499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
115-448
               

               
Cow position:
               
chr1:19482303-19481979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 78
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr1:54478094-54478433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 71
               

               
Conread position:
               
115-462
               

               
Cow position:
               
chr1:56634868-56635213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
120, 72
               

               
Conread position:
               
115-474
               

               
Cow position:
               
chr1:4290928-4291295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
115-477
               

               
Cow position:
               
chr1:70434763-70435125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 171
               

               
Conread position:
               
115-478
               

               
Cow position:
               
chr1:83747710-83748074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
115-482
               

               
Cow position:
               
chr1:48580901-48581264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
115-483
               

               
Cow position:
               
chr1:61742197-61741828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 66
               

               
Conread position:
               
115-494
               

               
Cow position:
               
chr1:53458476-53458850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 71
               

               
Conread position:
               
115-494
               

               
Cow position:
               
chr1:64302463-64302099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
180, 15
               

               
Conread position:
               
115-494
               

               
Cow position:
               
chr1:101713887-101714266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
116-237
               

               
Cow position:
               
chr1:8659419-8659542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
116-254
               

               
Cow position:
               
chr1:60120199-60120339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 127
               

               
Conread position:
               
116-286
               

               
Cow position:
               
chr1:55686448-55686277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
116-291
               

               
Cow position:
               
chr1:20125382-20125558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
116-291
               

               
Cow position:
               
chr1:36613504-36613330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-301
               

               
Cow position:
               
chr1:91733652-91733843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-304
               

               
Cow position:
               
chr1:71325476-71325288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr1:732154-731977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr1:63905703-63905507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr1:75967207-75967396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
171, 68
               

               
Conread position:
               
116-322
               

               
Cow position:
               
chr1:15311639-15311847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 94
               

               
Conread position:
               
116-325
               

               
Cow position:
               
chr1:24655731-24655943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
116-326
               

               
Cow position:
               
chr1:33811705-33811914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
194, 65
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr1:21835719-21835930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-344
               

               
Cow position:
               
chr1:3456643-3456868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
116-359
               

               
Cow position:
               
chr1:67821439-67821197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
116-361
               

               
Cow position:
               
chr1:94403987-94404229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 70
               

               
Conread position:
               
116-362
               

               
Cow position:
               
chr1:12596130-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 36
               

               
Conread position:
               
116-370
               

               
Cow position:
               
chr1:11873586-11873337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
172, 71
               

               
Conread position:
               
116-372
               

               
Cow position:
               
chr1:3035222-3034973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
171, 71
               

               
Conread position:
               
116-372
               

               
Cow position:
               
chr1:80869877-80870141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
68, 207
               

               
Conread position:
               
116-379
               

               
Cow position:
               
chr1:45535473-45535740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
116-383
               

               
Cow position:
               
chr1:73561879-73561610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
116-391
               

               
Cow position:
               
chr1:98985152-98984871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 218
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr1:34300777-34300479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr1:45007237-45007538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 163
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr1:64804337-64804030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 184
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr1:73464367-73464673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 214
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr1:85151408-85151109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr1:100421614-100421897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
169, 57
               

               
Conread position:
               
116-421
               

               
Cow position:
               
chr1:46693885-46693579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
116-428
               

               
Cow position:
               
chr1:79278671-79278366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
171, 40
               

               
Conread position:
               
116-429
               

               
Cow position:
               
chr1:102647498-102647190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
116-432
               

               
Cow position:
               
chr1:44506739-44507059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
116-433
               

               
Cow position:
               
chr1:68951402-68951712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr1:5023968-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
193, 62
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr1:51531544-51531843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
126, 56
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr1:53424958-53425269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr1:55146572-55146890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
70, 110
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr1:102266496-102266176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 70
               

               
Conread position:
               
116-446
               

               
Cow position:
               
chr1:20204797-20205127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
116-447
               

               
Cow position:
               
chr1:20384850-20384522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
116-448
               

               
Cow position:
               
chr1:101634472-101634814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 244
               

               
Conread position:
               
116-449
               

               
Cow position:
               
chr1:94226777-94226452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr1:7350309-7350652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr1:45289102-45288767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr1:72304600-72304285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr1:75744631-75744966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr1:102784731-102785057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
116-461
               

               
Cow position:
               
chr1:41252632-41252295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
116-472
               

               
Cow position:
               
chr1:95215415-95215064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
70, 204
               

               
Conread position:
               
116-473
               

               
Cow position:
               
chr1:22826940-22827285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
277, 71
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chr1:3962913-3962554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
183, 60
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chr1:36931930-36932285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
179, 72
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chr1:74822222-74822581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 163
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chr1:84812166-84811808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 138
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr1:22728818-22729191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr1:55357515-55357161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr1:68253362-68253730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 92
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr1:98551484-98551854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr1:71253784-71253420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 98
               

               
Conread position:
               
116-482
               

               
Cow position:
               
chr1:21787097-21787473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 357
               

               
Conread position:
               
116-483
               

               
Cow position:
               
chr1:47233704-47233338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
116-486
               

               
Cow position:
               
chr1:73960472-73960843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 199
               

               
Conread position:
               
116-488
               

               
Cow position:
               
chr1:12222834-12222456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
116-488
               

               
Cow position:
               
chr1:31934284-31934652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 65
               

               
Conread position:
               
116-491
               

               
Cow position:
               
chr1:81290289-81290653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 55
               

               
Conread position:
               
116-492
               

               
Cow position:
               
chr1:13637900-13637517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 70
               

               
Conread position:
               
116-492
               

               
Cow position:
               
chr1:61884686-61885060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 163
               

               
Conread position:
               
116-493
               

               
Cow position:
               
chr1:43505294-43505673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:3924023-3923654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:42887492-42887130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:53374206-53374580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:55705483-55705094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 282
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:69678555-69678174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 150
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:81569264-81568879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 189
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:86113642-86113246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 56
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr1:99642599-99642219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
64, 215
               

               
Conread position:
               
116-496
               

               
Cow position:
               
chr1:1981339-1980957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 69
               

               
Conread position:
               
117-270
               

               
Cow position:
               
chr1:73756865-73757012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
117-276
               

               
Cow position:
               
chr1:40062220-40062382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
117-291
               

               
Cow position:
               
chr1:19545328-19545154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 75
               

               
Conread position:
               
117-291
               

               
Cow position:
               
chr1:30504242-30504416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 98
               

               
Conread position:
               
117-291
               

               
Cow position:
               
chr1:44136690-44136521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
117-296
               

               
Cow position:
               
chr1:64160112-64160290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
119, 68
               

               
Conread position:
               
117-302
               

               
Cow position:
               
chr1:17032564-17032374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 81
               

               
Conread position:
               
117-303
               

               
Cow position:
               
chr1:32631238-32631420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
117, 69
               

               
Conread position:
               
117-304
               

               
Cow position:
               
chr1:34000677-34000872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
117-304
               

               
Cow position:
               
chr1:97620069-97619877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
117-309
               

               
Cow position:
               
chr1:23969265-23969073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
117-322
               

               
Cow position:
               
chr1:99095135-99095343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 54
               

               
Conread position:
               
117-329
               

               
Cow position:
               
chr1:98380805-98380586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
117-366
               

               
Cow position:
               
chr1:47008802-47009053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
117-370
               

               
Cow position:
               
chr1:666132-666390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
113, 70
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr1:57264215-57263959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr1:57635238-57635495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr1:26930203-26929938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
69, 194
               

               
Conread position:
               
117-390
               

               
Cow position:
               
chr1:71045526-71045799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
117-405
               

               
Cow position:
               
chr1:10655249-10655540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 199
               

               
Conread position:
               
117-415
               

               
Cow position:
               
chr1:11914106-11913809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 75
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr1:94212005-94212299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr1:10942320-10942019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr1:21508159-21508468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
34, 150
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr1:42968546-42968244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 148
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr1:52753394-52753085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr1:63596288-63595979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
69, 217
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr1:73584630-73584335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
170, 48
               

               
Conread position:
               
117-432
               

               
Cow position:
               
chr1:92963170-92963481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
185, 70
               

               
Conread position:
               
117-433
               

               
Cow position:
               
chr1:52435042-52435359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
117-433
               

               
Cow position:
               
chr1:96478467-96478787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
117-438
               

               
Cow position:
               
chr1:72286278-72285976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
305, 69
               

               
Conread position:
               
117-446
               

               
Cow position:
               
chr1:92433791-92434099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
180, 18
               

               
Conread position:
               
117-448
               

               
Cow position:
               
chr1:85774231-85774559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
69, 98
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:5135920-5135606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:8349539-8349221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:10964066-10964394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:34159603-34159940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 90
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:41056456-41056782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 34
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:48105662-48105332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 75
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:79844240-79844569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 70
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:80899879-80900223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 334
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:81355932-81355599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 70
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr1:88652402-88652740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
117-465
               

               
Cow position:
               
chr1:70380374-70380024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 69
               

               
Conread position:
               
117-472
               

               
Cow position:
               
chr1:100800128-100800480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
117-474
               

               
Cow position:
               
chr1:69264593-69264939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
117-477
               

               
Cow position:
               
chr1:69539470-69539822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
170, 35
               

               
Conread position:
               
117-477
               

               
Cow position:
               
chr1:89510161-89509789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 141
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr1:48731056-48730700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr1:85162776-85162414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 165
               

               
Conread position:
               
117-482
               

               
Cow position:
               
chr1:39427210-39426872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
117-482
               

               
Cow position:
               
chr1:52994795-52995169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 133
               

               
Conread position:
               
117-482
               

               
Cow position:
               
chr1:82338012-82337647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr1:10632825-10633189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
169, 58
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr1:37322233-37321863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr1:51445651-51446031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr1:99609137-99609515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
117-493
               

               
Cow position:
               
chr1:29935610-29935240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
117-493
               

               
Cow position:
               
chr1:89342221-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:874415-874807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:20002464-20002078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:22730533-22730883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
351, 64
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:24133284-24132913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:25383434-25383819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 69
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:38278273-38277876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:45555133-45555516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:52039408-52039783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 70
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:56225247-56225619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 69
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:70297043-70297431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 102
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:72069055-72068681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
172, 52
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:78810807-78811188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 230
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:78857551-78857176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:79590872-79591254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 200
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:91817002-91816618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr1:96964092-96964469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
125, 69
               

               
Conread position:
               
117-496
               

               
Cow position:
               
chr1:95499724-95499344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 114
               

               
Conread position:
               
118-283
               

               
Cow position:
               
chr1:57639748-57639585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
68, 114
               

               
Conread position:
               
118-291
               

               
Cow position:
               
chr1:31348137-31347971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
118-315
               

               
Cow position:
               
chr1:26200993-26201189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr1:41004594-41004359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
118-416
               

               
Cow position:
               
chr1:44769339-44769039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
175, 77
               

               
Conread position:
               
118-417
               

               
Cow position:
               
chr1:42256737-42256431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 201
               

               
Conread position:
               
118-418
               

               
Cow position:
               
chr1:7186560-7186860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
118-418
               

               
Cow position:
               
chr1:47658126-47658417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
181, 68
               

               
Conread position:
               
118-421
               

               
Cow position:
               
chr1:48444410-48444119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
167, 59
               

               
Conread position:
               
118-427
               

               
Cow position:
               
chr1:13895713-13895401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
118-448
               

               
Cow position:
               
chr1:3790283-3789967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
118-448
               

               
Cow position:
               
chr1:81868954-81868627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
118-449
               

               
Cow position:
               
chr1:100705905-100706229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr1:6077667-6077995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 196
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr1:81563506-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr1:97954676-97954364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
118-486
               

               
Cow position:
               
chr1:45020031-45019656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
118-486
               

               
Cow position:
               
chr1:97611880-97611514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
127, 66
               

               
Conread position:
               
118-488
               

               
Cow position:
               
chr1:56229026-56229378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
6, 75
               

               
Conread position:
               
118-488
               

               
Cow position:
               
chr1:82936809-82936456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
118-493
               

               
Cow position:
               
chr1:70538376-70538755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 341
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr1:43389275-43388904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr1:54207045-54206669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 8
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr1:68818025-68817650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 25
               

               
Conread position:
               
119-330
               

               
Cow position:
               
chr1:90640798-90641018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
119-335
               

               
Cow position:
               
chr1:8532439-8532220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
119-348
               

               
Cow position:
               
chr1:91142383-91142154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
62, 96
               

               
Conread position:
               
119-405
               

               
Cow position:
               
chr1:97755295-97755579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
169, 66
               

               
Conread position:
               
119-408
               

               
Cow position:
               
chr1:24235747-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 208
               

               
Conread position:
               
119-409
               

               
Cow position:
               
chr1:54199609-54199316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
119-417
               

               
Cow position:
               
chr1:63391000-63390696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
122, 67
               

               
Conread position:
               
119-418
               

               
Cow position:
               
chr1:4032408-4032704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
119-418
               

               
Cow position:
               
chr1:4374565-4374265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
123, 68
               

               
Conread position:
               
119-418
               

               
Cow position:
               
chr1:101915940-101916238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 178
               

               
Conread position:
               
119-421
               

               
Cow position:
               
chr1:31765623-31765298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
119-429
               

               
Cow position:
               
chr1:64251278-64250969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
68, 82
               

               
Conread position:
               
119-476
               

               
Cow position:
               
chr1:6305093-6304740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 7
               

               
Conread position:
               
119-477
               

               
Cow position:
               
chr1:57575994-57575633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 188
               

               
Conread position:
               
119-494
               

               
Cow position:
               
chr1:8396-8768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
119-494
               

               
Cow position:
               
chr1:4539665-4539269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
120-285
               

               
Cow position:
               
chr1:81363767-81363923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
120-308
               

               
Cow position:
               
chr1:44164853-44165046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
120-372
               

               
Cow position:
               
chr1:1403699-1403455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
120-380
               

               
Cow position:
               
chr1:88970834-88971089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 67
               

               
Conread position:
               
120-421
               

               
Cow position:
               
chr1:87072479-87072771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
191, 67
               

               
Conread position:
               
120-448
               

               
Cow position:
               
chr1:99614222-99614543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
120-450
               

               
Cow position:
               
chr1:3720652-3720340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
166, 66
               

               
Conread position:
               
120-450
               

               
Cow position:
               
chr1:37309736-37309415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
125, 67
               

               
Conread position:
               
120-450
               

               
Cow position:
               
chr1:64678472-64678799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 159
               

               
Conread position:
               
120-478
               

               
Cow position:
               
chr1:90868661-90868312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 51
               

               
Conread position:
               
120-494
               

               
Cow position:
               
chr1:62964054-62964418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 63
               

               
Conread position:
               
120-494
               

               
Cow position:
               
chr1:68854949-68855316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 65
               

               
Conread position:
               
120-494
               

               
Cow position:
               
chr1:71079182-71078812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
121-450
               

               
Cow position:
               
chr1:96472205-96472534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 209
               

               
Conread position:
               
121-479
               

               
Cow position:
               
chr1:43872557-43872184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
122-379
               

               
Cow position:
               
chr1:71952864-71953109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
122-418
               

               
Cow position:
               
chr1:70422077-70422376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 209
               

               
Conread position:
               
122-450
               

               
Cow position:
               
chr1:3167295-3166972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
123-422
               

               
Cow position:
               
chr1:85867372-85867665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
123-450
               

               
Cow position:
               
chr1:82884613-82884291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
123-493
               

               
Cow position:
               
chr1:36997970-36998331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
119, 64
               

               
Conread position:
               
125-431
               

               
Cow position:
               
chr1:98310840-98311157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 208
               

               
Conread position:
               
126-438
               

               
Cow position:
               
chr1:26702427-26702115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
126-450
               

               
Cow position:
               
chr1:71295534-71295188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
127-291
               

               
Cow position:
               
chr1:14981337-14981176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
127-332
               

               
Cow position:
               
chr1:84116183-84116382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
113, 46
               

               
Conread position:
               
127-359
               

               
Cow position:
               
chr1:45673493-45673721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
127-450
               

               
Cow position:
               
chr1:7971212-7971516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
166, 59
               

               
Conread position:
               
127-473
               

               
Cow position:
               
chr1:40599830-40600165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 54
               

               
Conread position:
               
127-477
               

               
Cow position:
               
chr1:98030696-98031056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 123
               

               
Conread position:
               
127-478
               

               
Cow position:
               
chr1:53671968-53671615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
127-479
               

               
Cow position:
               
chr1:84255536-84255903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
127-492
               

               
Cow position:
               
chr1:93043807-93044162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
130-438
               

               
Cow position:
               
chr1:19465847-19466145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
163, 56
               

               
Conread position:
               
130-478
               

               
Cow position:
               
chr1:34771719-34771368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
130-484
               

               
Cow position:
               
chr1:98461075-98461423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
130-494
               

               
Cow position:
               
chr1:21577589-21577959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
132-494
               

               
Cow position:
               
chr1:42175506-42175878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr1:5873184-5872983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
133-478
               

               
Cow position:
               
chr1:27145866-27145522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
54, 183
               

               
Conread position:
               
135-271
               

               
Cow position:
               
chr1:99792601-99792740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
135-421
               

               
Cow position:
               
chr1:26179025-26178736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 148
               

               
Conread position:
               
135-450
               

               
Cow position:
               
chr1:70828702-70829006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
145, 31
               

               
Conread position:
               
136-416
               

               
Cow position:
               
chr1:95654925-95654643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
50, 180
               

               
Conread position:
               
136-418
               

               
Cow position:
               
chr1:57946096-57945802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
136-450
               

               
Cow position:
               
chr1:62291895-62291597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 50
               

               
Conread position:
               
137-450
               

               
Cow position:
               
chr1:100393373-100393059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
137-494
               

               
Cow position:
               
chr1:197216-196856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
138-478
               

               
Cow position:
               
chr1:62036593-62036934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 95
               

               
Conread position:
               
138-494
               

               
Cow position:
               
chr1:12464871-12464516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 49
               

               
Conread position:
               
140-478
               

               
Cow position:
               
chr1:68763889-68763552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
142-418
               

               
Cow position:
               
chr1:86279211-86279485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
143-417
               

               
Cow position:
               
chr1:63138636-63138912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
144-326
               

               
Cow position:
               
chr1:43340824-43340629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
147-313
               

               
Cow position:
               
chr1:49753732-49753898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
147-418
               

               
Cow position:
               
chr1:89185377-89185096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
147-421
               

               
Cow position:
               
chr1:51654212-51654499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
147-421
               

               
Cow position:
               
chr1:84906266-84905988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
147-449
               

               
Cow position:
               
chr1:24542780-24542467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
147-477
               

               
Cow position:
               
chr1:24581383-24581708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 121
               

               
Conread position:
               
147-483
               

               
Cow position:
               
chr1:94261349-94261669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
148-479
               

               
Cow position:
               
chr1:90976280-90975951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:43703218-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
152-331
               

               
Cow position:
               
chr1:72462945-72463131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 173
               

               
Conread position:
               
152-379
               

               
Cow position:
               
chr1:90392691-90392458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr1:13451856-13452090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
152-388
               

               
Cow position:
               
chr1:88625259-88625499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
152-417
               

               
Cow position:
               
chr1:89497772-89498024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
179, 35
               

               
Conread position:
               
152-418
               

               
Cow position:
               
chr1:2219145-2218873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 165
               

               
Conread position:
               
152-418
               

               
Cow position:
               
chr1:10071040-10070770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 162
               

               
Conread position:
               
152-418
               

               
Cow position:
               
chr1:61563919-61564191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
152-432
               

               
Cow position:
               
chr1:6788483-6788197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
152-494
               

               
Cow position:
               
chr1:58754978-58754647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
152-494
               

               
Cow position:
               
chr1:96277248-96276903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 34
               

               
Conread position:
               
153-331
               

               
Cow position:
               
chr1:83594000-83593813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
153-494
               

               
Cow position:
               
chr1:83072251-83072592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 33
               

               
Conread position:
               
154-338
               

               
Cow position:
               
chr1:57097173-57097356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
154-418
               

               
Cow position:
               
chr1:73546098-73545839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 127
               

               
Conread position:
               
157-494
               

               
Cow position:
               
chr1:42398385-42398046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
158-324
               

               
Cow position:
               
chr1:89082920-89083091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
158-418
               

               
Cow position:
               
chr1:74927693-74927956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
76, 5
               

               
Conread position:
               
159-418
               

               
Cow position:
               
chr1:64941488-64941223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
159-450
               

               
Cow position:
               
chr1:39510237-39509954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 118
               

               
Conread position:
               
159-481
               

               
Cow position:
               
chr1:92369542-92369872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 159
               

               
Conread position:
               
159-494
               

               
Cow position:
               
chr1:54156927-54156584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 176
               

               
Conread position:
               
159-495
               

               
Cow position:
               
chr1:33207061-33206727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
159-496
               

               
Cow position:
               
chr1:61012123-61012458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
160-418
               

               
Cow position:
               
chr1:31608084-31607817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 48
               

               
Conread position:
               
161-383
               

               
Cow position:
               
chr1:99039537-99039318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
161-454
               

               
Cow position:
               
chr1:75933088-75933374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
163-322
               

               
Cow position:
               
chr1:80311288-80311445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
163-492
               

               
Cow position:
               
chr1:91875091-91874766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
163-494
               

               
Cow position:
               
chr1:89388149-89388493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
164-450
               

               
Cow position:
               
chr1:85647963-85647678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
165-478
               

               
Cow position:
               
chr1:24778159-24777862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chr1:20667921-20667609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
167-383
               

               
Cow position:
               
chr1:48258202-48258420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
167-407
               

               
Cow position:
               
chr1:24445807-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
167-418
               

               
Cow position:
               
chr1:57617826-57618081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 128
               

               
Conread position:
               
168-418
               

               
Cow position:
               
chr1:57297301-57297554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
170-438
               

               
Cow position:
               
chr1:42545959-42545687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
173-488
               

               
Cow position:
               
chr1:49317669-49317353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
174-482
               

               
Cow position:
               
chr1:51417605-51417904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
175-494
               

               
Cow position:
               
chr1:59518750-59519061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
136, 12
               

               
Conread position:
               
176-450
               

               
Cow position:
               
chr1:12978512-12978786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 5
               

               
Conread position:
               
176-479
               

               
Cow position:
               
chr1:101632508-101632206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
184-494
               

               
Cow position:
               
chr1:88913155-88913470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
185-336
               

               
Cow position:
               
chr1:31960063-31960219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
185-412
               

               
Cow position:
               
chr1:89508395-89508617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
105, 131
               

               
Conread position:
               
185-418
               

               
Cow position:
               
chr1:69078504-69078738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 166
               

               
Conread position:
               
185-433
               

               
Cow position:
               
chr1:70026505-70026258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 133
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr1:31695373-31695119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
185-475
               

               
Cow position:
               
chr1:38401631-38401929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
185-478
               

               
Cow position:
               
chr1:45553392-45553108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
185-482
               

               
Cow position:
               
chr1:3882626-3882320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
185-494
               

               
Cow position:
               
chr1:86110893-86110592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
185-495
               

               
Cow position:
               
chr1:7748056-7748365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 153
               

               
Conread position:
               
186-450
               

               
Cow position:
               
chr1:77683197-77683456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 127
               

               
Conread position:
               
186-494
               

               
Cow position:
               
chr1:78096776-78097076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
187-433
               

               
Cow position:
               
chr1:101946866-101946627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
189-494
               

               
Cow position:
               
chr1:97090167-97090470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
190-478
               

               
Cow position:
               
chr1:65909370-65909645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 124
               

               
Conread position:
               
191-432
               

               
Cow position:
               
chr1:60281215-60281459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
133, 121
               

               
Conread position:
               
191-439
               

               
Cow position:
               
chr1:33409783-33409532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 143
               

               
Conread position:
               
191-476
               

               
Cow position:
               
chr1:93554688-93554969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
192-473
               

               
Cow position:
               
chr1:17196783-17196500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
193-449
               

               
Cow position:
               
chr1:41115868-41115616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 135
               

               
Conread position:
               
193-479
               

               
Cow position:
               
chr1:86682716-86682430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 139
               

               
Conread position:
               
193-494
               

               
Cow position:
               
chr1:87197674-87197970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
195-482
               

               
Cow position:
               
chr1:101834673-101834955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
249, 72
               

               
Conread position:
               
196-488
               

               
Cow position:
               
chr1:31272591-31272302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
273, 128
               

               
Conread position:
               
197-432
               

               
Cow position:
               
chr1:23512804-23512573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
200-475
               

               
Cow position:
               
chr1:68845297-68845040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
80, 8
               

               
Conread position:
               
202-450
               

               
Cow position:
               
chr1:8129111-8128864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
203-413
               

               
Cow position:
               
chr1:87440325-87440535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
113, 73
               

               
Conread position:
               
207-450
               

               
Cow position:
               
chr1:89230367-89230127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 55
               

               
Conread position:
               
208-422
               

               
Cow position:
               
chr1:92997037-92996815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
208-478
               

               
Cow position:
               
chr1:89448759-89449036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
209-494
               

               
Cow position:
               
chr1:56618788-56618506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
213-474
               

               
Cow position:
               
chr1:78838665-78838922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
120, 98
               

               
Conread position:
               
213-476
               

               
Cow position:
               
chr1:18780467-18780200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
213-478
               

               
Cow position:
               
chr1:41047433-41047167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
213-479
               

               
Cow position:
               
chr1:85550211-85549942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
78, 101
               

               
Conread position:
               
214-410
               

               
Cow position:
               
chr1:85301286-85301481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
109, 99
               

               
Conread position:
               
214-450
               

               
Cow position:
               
chr1:101860621-101860380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 179
               

               
Conread position:
               
214-494
               

               
Cow position:
               
chr1:64572381-64572664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr1:79640421-79640139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
221-418
               

               
Cow position:
               
chr1:91370134-91369937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
56, 94
               

               
Conread position:
               
224-478
               

               
Cow position:
               
chr1:43311898-43311636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
224-494
               

               
Cow position:
               
chr1:20104146-20104416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
64, 90
               

               
Conread position:
               
227-418
               

               
Cow position:
               
chr1:261598-261410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 49
               

               
Conread position:
               
227-478
               

               
Cow position:
               
chr1:9437428-9437155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
230-450
               

               
Cow position:
               
chr1:6826405-6826195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
230-483
               

               
Cow position:
               
chr1:7023004-7023257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 239
               

               
Conread position:
               
232-449
               

               
Cow position:
               
chr1:61543032-61542816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 91
               

               
Conread position:
               
234-450
               

               
Cow position:
               
chr1:23999033-23998832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
234-483
               

               
Cow position:
               
chr1:10716390-10716636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:98059937-98060209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
235-450
               

               
Cow position:
               
chr1:65028418-65028638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
236-478
               

               
Cow position:
               
chr1:81580066-81580312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 6
               

               
Conread position:
               
236-483
               

               
Cow position:
               
chr1:98511817-98512066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
240-478
               

               
Cow position:
               
chr1:37886916-37886677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 135
               

               
Conread position:
               
244-450
               

               
Cow position:
               
chr1:19227157-19226953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
248-478
               

               
Cow position:
               
chr1:77232666-77232443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
203, 28
               

               
Conread position:
               
249-494
               

               
Cow position:
               
chr1:82513453-82513207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
253-494
               

               
Cow position:
               
chr1:90904847-90904607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
256-450
               

               
Cow position:
               
chr1:4581417-4581226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
258-486
               

               
Cow position:
               
chr1:80841562-80841789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
262-465
               

               
Cow position:
               
chr1:99793459-99793666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
262-478
               

               
Cow position:
               
chr1:50991850-50992065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
266-427
               

               
Cow position:
               
chr1:61560807-61560642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
268-450
               

               
Cow position:
               
chr1:52467223-52467407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 136
               

               
Conread position:
               
278-478
               

               
Cow position:
               
chr1:95072263-95072463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 186
               

               
Conread position:
               
278-494
               

               
Cow position:
               
chr1:46143531-46143318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
278-494
               

               
Cow position:
               
chr1:54268000-54267790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
182, 27
               

               
Conread position:
               
286-450
               

               
Cow position:
               
chr1:35671484-35671643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
286-478
               

               
Cow position:
               
chr1:79003915-79004106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
286-496
               

               
Cow position:
               
chr1:80584372-80584580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
164, 40
               

               
Conread position:
               
288-474
               

               
Cow position:
               
chr1:79146878-79146686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
290-494
               

               
Cow position:
               
chr1:81481439-81481235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 174
               

               
Conread position:
               
314-491
               

               
Cow position:
               
chr1:41027043-41027223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
137, 81
               

               
Conread position:
               
317-450
               

               
Cow position:
               
chr1:82556438-82556308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
325-494
               

               
Cow position:
               
chr1:24530481-24530648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
330-484
               

               
Cow position:
               
chr1:45315652-45315495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               
Show alignments to all cow chromosomes.