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Cow genome map

           
Conread name:
           
rsug23_m4.y1
        

               
Conread position:
               
86-450
               

               
Cow position:
               
chr11:16342530-16342148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
90-494
               

               
Cow position:
               
chr11:46748147-46747731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 239
               

               
Conread position:
               
98-450
               

               
Cow position:
               
chr11:77128395-77128741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
99-450
               

               
Cow position:
               
chr11:17321386-17321731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 216
               

               
Conread position:
               
103-338
               

               
Cow position:
               
chr11:63520505-63520743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
83, 112
               

               
Conread position:
               
104-494
               

               
Cow position:
               
chr11:2907792-2907403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 219
               

               
Conread position:
               
105-494
               

               
Cow position:
               
chr11:66188587-66188191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
108-291
               

               
Cow position:
               
chr11:27722099-27722284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
110-398
               

               
Cow position:
               
chr11:75355349-75355649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
110-432
               

               
Cow position:
               
chr11:48649700-48650035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 208
               

               
Conread position:
               
110-494
               

               
Cow position:
               
chr11:40818899-40818504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
111-488
               

               
Cow position:
               
chr11:34120939-34121324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
112-430
               

               
Cow position:
               
chr11:4207041-4207372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
112-492
               

               
Cow position:
               
chr11:77319165-77319538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 74
               

               
Conread position:
               
113-418
               

               
Cow position:
               
chr11:42016896-42016591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
73, 208
               

               
Conread position:
               
113-450
               

               
Cow position:
               
chr11:25791950-25791614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
113-450
               

               
Cow position:
               
chr11:43361055-43360703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
113-479
               

               
Cow position:
               
chr11:83066238-83066596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 96
               

               
Conread position:
               
114-272
               

               
Cow position:
               
chr11:10294339-10294493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
114-381
               

               
Cow position:
               
chr11:4412274-4412010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 204
               

               
Conread position:
               
114-421
               

               
Cow position:
               
chr11:77745507-77745200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 72
               

               
Conread position:
               
114-428
               

               
Cow position:
               
chr11:30120918-30120603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
172, 73
               

               
Conread position:
               
114-429
               

               
Cow position:
               
chr11:1849422-1849111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
114-494
               

               
Cow position:
               
chr11:50153075-50152685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 360
               

               
Conread position:
               
114-494
               

               
Cow position:
               
chr11:73354310-73353939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 69
               

               
Conread position:
               
115-285
               

               
Cow position:
               
chr11:3704064-3704232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
115-309
               

               
Cow position:
               
chr11:9837352-9837159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
115-365
               

               
Cow position:
               
chr11:63516568-63516823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
115-410
               

               
Cow position:
               
chr11:42793231-42792932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 218
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr11:21437372-21437674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 164
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr11:45898310-45897978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
115-447
               

               
Cow position:
               
chr11:58588089-58588422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
71, 164
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr11:49934997-49934650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr11:50778115-50778448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 202
               

               
Conread position:
               
115-454
               

               
Cow position:
               
chr11:41271883-41272222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 143
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr11:11232709-11232359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
115-478
               

               
Cow position:
               
chr11:11125408-11125774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
115-494
               

               
Cow position:
               
chr11:34113019-34113390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
165, 49
               

               
Conread position:
               
115-494
               

               
Cow position:
               
chr11:55052618-55052995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 174
               

               
Conread position:
               
116-293
               

               
Cow position:
               
chr11:27462639-27462469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
116-298
               

               
Cow position:
               
chr11:86926174-86925999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr11:32609737-32609943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr11:68570926-68570725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 52
               

               
Conread position:
               
116-311
               

               
Cow position:
               
chr11:19508043-19508238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 65
               

               
Conread position:
               
116-311
               

               
Cow position:
               
chr11:43913968-43914156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
116-324
               

               
Cow position:
               
chr11:60470434-60470218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 62
               

               
Conread position:
               
116-325
               

               
Cow position:
               
chr11:36647106-36647313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 173
               

               
Conread position:
               
116-346
               

               
Cow position:
               
chr11:62045144-62045373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 71
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr11:18484414-18484191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
208, 70
               

               
Conread position:
               
116-361
               

               
Cow position:
               
chr11:65857603-65857852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
116-373
               

               
Cow position:
               
chr11:71455533-71455794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
71, 205
               

               
Conread position:
               
116-375
               

               
Cow position:
               
chr11:17968830-17968576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
203, 70
               

               
Conread position:
               
116-375
               

               
Cow position:
               
chr11:38193897-38194163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-383
               

               
Cow position:
               
chr11:62979223-62979504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 227
               

               
Conread position:
               
116-384
               

               
Cow position:
               
chr11:50197699-50197418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
70, 213
               

               
Conread position:
               
116-384
               

               
Cow position:
               
chr11:60302212-60301946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
116-390
               

               
Cow position:
               
chr11:16251503-16251223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
116-416
               

               
Cow position:
               
chr11:13190966-13191281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
116-416
               

               
Cow position:
               
chr11:39115239-39115540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 99
               

               
Conread position:
               
116-416
               

               
Cow position:
               
chr11:53773418-53773728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-417
               

               
Cow position:
               
chr11:33754154-33753861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
116-417
               

               
Cow position:
               
chr11:79979407-79979700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr11:14259270-14258970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr11:17860408-17860107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
127, 70
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr11:76369776-76369474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
116-421
               

               
Cow position:
               
chr11:287587-287284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
116-421
               

               
Cow position:
               
chr11:8495783-8496084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
116-421
               

               
Cow position:
               
chr11:55744219-55744519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 101
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr11:10620580-10620259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
116-446
               

               
Cow position:
               
chr11:47544873-47545208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 277
               

               
Conread position:
               
116-446
               

               
Cow position:
               
chr11:80564050-80564370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
116-447
               

               
Cow position:
               
chr11:62880878-62880554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr11:23128794-23128459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 71
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr11:33341400-33341064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr11:44036461-44036800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 205
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr11:45632019-45631685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
70, 255
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr11:56518567-56518231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 257
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr11:63482680-63482350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr11:80820253-80819924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 99
               

               
Conread position:
               
116-454
               

               
Cow position:
               
chr11:35881657-35881995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
210, 67
               

               
Conread position:
               
116-473
               

               
Cow position:
               
chr11:13061478-13061134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 60
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chr11:44637015-44636648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chr11:62151136-62150783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 76
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr11:952014-952378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 142
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr11:28643827-28644199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 54
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr11:53778358-53778724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr11:54334080-54334440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr11:65826986-65826645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 54
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr11:73924813-73924449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr11:377903-377528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr11:1071346-1070984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 71
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr11:23232768-23232411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
116-482
               

               
Cow position:
               
chr11:25386816-25387183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 44
               

               
Conread position:
               
116-483
               

               
Cow position:
               
chr11:70836622-70836266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
95, 65
               

               
Conread position:
               
116-484
               

               
Cow position:
               
chr11:76114400-76114758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
116-485
               

               
Cow position:
               
chr11:52381125-52380753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 72
               

               
Conread position:
               
116-488
               

               
Cow position:
               
chr11:44031745-44032133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-492
               

               
Cow position:
               
chr11:31227740-31228084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
164, 70
               

               
Conread position:
               
116-493
               

               
Cow position:
               
chr11:36182434-36182819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 76
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:3393465-3393086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:17036806-17036404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:17083552-17083187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 69
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:24601715-24602088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 195
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:30191915-30192309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:39499122-39499483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 62
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:52297478-52297095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 236
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:62663487-62663113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
71, 198
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:66041019-66041400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:67600513-67600906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
71, 354
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr11:75480281-75479894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 96
               

               
Conread position:
               
116-496
               

               
Cow position:
               
chr11:27248239-27248618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
117-303
               

               
Cow position:
               
chr11:7315380-7315192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
117-309
               

               
Cow position:
               
chr11:41983700-41983512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
169, 70
               

               
Conread position:
               
117-309
               

               
Cow position:
               
chr11:74929526-74929724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
117-315
               

               
Cow position:
               
chr11:81137968-81138170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
117-332
               

               
Cow position:
               
chr11:10992026-10992246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr11:47586599-47586354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
117-369
               

               
Cow position:
               
chr11:59156125-59155877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
117-372
               

               
Cow position:
               
chr11:81174636-81174889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
80, 70
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr11:82232167-82232431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
168, 60
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr11:26009973-26010241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
69, 211
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr11:83196245-83196511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
84, 70
               

               
Conread position:
               
117-388
               

               
Cow position:
               
chr11:37536877-37537152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 205
               

               
Conread position:
               
117-401
               

               
Cow position:
               
chr11:6154158-6154440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 107
               

               
Conread position:
               
117-406
               

               
Cow position:
               
chr11:27386594-27386302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 76
               

               
Conread position:
               
117-409
               

               
Cow position:
               
chr11:30912246-30911962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
69, 162
               

               
Conread position:
               
117-416
               

               
Cow position:
               
chr11:75177634-75177941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
117-417
               

               
Cow position:
               
chr11:28226082-28225780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr11:20730532-20730229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 211
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr11:45277410-45277103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 220
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr11:3780678-3780366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 127
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr11:18588834-18588534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
70, 126
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr11:32595213-32595509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
69, 148
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr11:36981314-36981615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr11:56728693-56729001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr11:61202909-61203217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 148
               

               
Conread position:
               
117-427
               

               
Cow position:
               
chr11:4323113-4323416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
117-429
               

               
Cow position:
               
chr11:70273047-70273366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
117-435
               

               
Cow position:
               
chr11:4732085-4732408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
69, 202
               

               
Conread position:
               
117-445
               

               
Cow position:
               
chr11:81162685-81162357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
117-449
               

               
Cow position:
               
chr11:8428241-8428591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 94
               

               
Conread position:
               
117-449
               

               
Cow position:
               
chr11:35684751-35684421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 202
               

               
Conread position:
               
117-449
               

               
Cow position:
               
chr11:63469629-63469955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr11:1362735-1362387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr11:1625468-1625144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
197, 69
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr11:30354813-30355139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
69, 145
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr11:48496821-48496512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
249, 53
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr11:61454788-61454436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 232
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr11:62225746-62226067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
221, 62
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr11:64638777-64638445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
117-454
               

               
Cow position:
               
chr11:56821510-56821158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 205
               

               
Conread position:
               
117-454
               

               
Cow position:
               
chr11:61427360-61427677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
117-466
               

               
Cow position:
               
chr11:17278916-17278576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
117-477
               

               
Cow position:
               
chr11:21497287-21497630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
171, 69
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr11:48271941-48272310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr11:59702230-59702599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
117-479
               

               
Cow position:
               
chr11:20761591-20761955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 75
               

               
Conread position:
               
117-479
               

               
Cow position:
               
chr11:44234105-44234468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
117-481
               

               
Cow position:
               
chr11:69119046-69119409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
117-482
               

               
Cow position:
               
chr11:71168832-71168477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
117-483
               

               
Cow position:
               
chr11:3233827-3234186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 165
               

               
Conread position:
               
117-486
               

               
Cow position:
               
chr11:44222646-44223004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
117-486
               

               
Cow position:
               
chr11:77705512-77705870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr11:48544190-48544562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 16
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr11:55761625-55761983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
117-491
               

               
Cow position:
               
chr11:45872572-45872185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr11:13499761-13500142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
107, 66
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr11:27746665-27747046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 205
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr11:35580000-35580389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr11:74316452-74316834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr11:81300866-81300493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
69, 201
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr11:83043614-83043239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 70
               

               
Conread position:
               
117-495
               

               
Cow position:
               
chr11:43897884-43898268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 150
               

               
Conread position:
               
118-291
               

               
Cow position:
               
chr11:81614885-81614716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
129, 63
               

               
Conread position:
               
118-418
               

               
Cow position:
               
chr11:4674704-4674397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
10, 214
               

               
Conread position:
               
118-418
               

               
Cow position:
               
chr11:71868856-71868554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
125, 68
               

               
Conread position:
               
118-419
               

               
Cow position:
               
chr11:42003209-42002898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
69, 210
               

               
Conread position:
               
118-421
               

               
Cow position:
               
chr11:3719999-3720305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 147
               

               
Conread position:
               
118-421
               

               
Cow position:
               
chr11:4436080-4436371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
118-421
               

               
Cow position:
               
chr11:33349954-33349649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 185
               

               
Conread position:
               
118-421
               

               
Cow position:
               
chr11:81281692-81282009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
118-422
               

               
Cow position:
               
chr11:70303829-70304122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 69
               

               
Conread position:
               
118-423
               

               
Cow position:
               
chr11:3833600-3833309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
118-428
               

               
Cow position:
               
chr11:34032450-34032144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
118-432
               

               
Cow position:
               
chr11:6234131-6233817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
118-432
               

               
Cow position:
               
chr11:42358870-42359177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
118-448
               

               
Cow position:
               
chr11:22499604-22499288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr11:73512672-73512362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr11:80923587-80923243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 288
               

               
Conread position:
               
118-478
               

               
Cow position:
               
chr11:43430699-43430349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
212, 53
               

               
Conread position:
               
118-478
               

               
Cow position:
               
chr11:63847597-63847956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
118-482
               

               
Cow position:
               
chr11:70484114-70483741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
68, 323
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr11:259431-259048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr11:17227892-17227523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 63
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr11:35154080-35153693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 237
               

               
Conread position:
               
119-314
               

               
Cow position:
               
chr11:19890630-19890807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
119-351
               

               
Cow position:
               
chr11:62750002-62749774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
67, 160
               

               
Conread position:
               
119-406
               

               
Cow position:
               
chr11:65430810-65431091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 68
               

               
Conread position:
               
119-417
               

               
Cow position:
               
chr11:62155376-62155686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
115, 12
               

               
Conread position:
               
119-421
               

               
Cow position:
               
chr11:15632810-15632502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
119-430
               

               
Cow position:
               
chr11:83323322-83323624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 60
               

               
Conread position:
               
119-438
               

               
Cow position:
               
chr11:36986709-36987018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
5, 155
               

               
Conread position:
               
119-439
               

               
Cow position:
               
chr11:24937410-24937735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 125
               

               
Conread position:
               
119-444
               

               
Cow position:
               
chr11:46580115-46580431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
119-448
               

               
Cow position:
               
chr11:20238421-20238755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
119-448
               

               
Cow position:
               
chr11:45646845-45646515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 68
               

               
Conread position:
               
119-492
               

               
Cow position:
               
chr11:18707065-18706703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
119-494
               

               
Cow position:
               
chr11:21844387-21844011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 244
               

               
Conread position:
               
119-494
               

               
Cow position:
               
chr11:68207089-68206718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 67
               

               
Conread position:
               
119-494
               

               
Cow position:
               
chr11:68910099-68909725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
120-304
               

               
Cow position:
               
chr11:21819695-21819509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
160, 67
               

               
Conread position:
               
120-331
               

               
Cow position:
               
chr11:41577259-41577048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
120-418
               

               
Cow position:
               
chr11:36799548-36799258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
120-419
               

               
Cow position:
               
chr11:59902636-59902940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
14, 208
               

               
Conread position:
               
120-429
               

               
Cow position:
               
chr11:40258652-40258352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
120-447
               

               
Cow position:
               
chr11:8840991-8840668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 154
               

               
Conread position:
               
120-450
               

               
Cow position:
               
chr11:35874235-35873922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 23
               

               
Conread position:
               
120-472
               

               
Cow position:
               
chr11:38638870-38639215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
120-494
               

               
Cow position:
               
chr11:41549585-41549205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
164, 78
               

               
Conread position:
               
121-493
               

               
Cow position:
               
chr11:83230636-83230279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
195, 14
               

               
Conread position:
               
122-272
               

               
Cow position:
               
chr11:81042313-81042460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
122-432
               

               
Cow position:
               
chr11:16262281-16261962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 129
               

               
Conread position:
               
122-450
               

               
Cow position:
               
chr11:53553002-53553296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
123-351
               

               
Cow position:
               
chr11:77241126-77241345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
123-448
               

               
Cow position:
               
chr11:4663286-4662968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
172, 64
               

               
Conread position:
               
123-450
               

               
Cow position:
               
chr11:10213815-10213488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
125-478
               

               
Cow position:
               
chr11:50072716-50073049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
331, 67
               

               
Conread position:
               
125-494
               

               
Cow position:
               
chr11:62239504-62239869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 38
               

               
Conread position:
               
126-306
               

               
Cow position:
               
chr11:41438469-41438282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 75
               

               
Conread position:
               
126-494
               

               
Cow position:
               
chr11:8525357-8524990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
126-494
               

               
Cow position:
               
chr11:62620139-62620504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
127-332
               

               
Cow position:
               
chr11:25165200-25165407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 59
               

               
Conread position:
               
127-448
               

               
Cow position:
               
chr11:47899033-47899347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 190
               

               
Conread position:
               
127-450
               

               
Cow position:
               
chr11:15016802-15017137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 59
               

               
Conread position:
               
127-479
               

               
Cow position:
               
chr11:30639192-30638837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
59, 179
               

               
Conread position:
               
127-494
               

               
Cow position:
               
chr11:2917823-2917465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 54
               

               
Conread position:
               
131-423
               

               
Cow position:
               
chr11:67804509-67804803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 186
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr11:36659052-36658708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
166, 55
               

               
Conread position:
               
133-494
               

               
Cow position:
               
chr11:2925529-2925179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 185
               

               
Conread position:
               
135-418
               

               
Cow position:
               
chr11:23385480-23385194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
102, 51
               

               
Conread position:
               
135-450
               

               
Cow position:
               
chr11:18572568-18572881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
136-418
               

               
Cow position:
               
chr11:5961078-5961354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
136-478
               

               
Cow position:
               
chr11:71501357-71501024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
136-494
               

               
Cow position:
               
chr11:11469868-11469525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
138-448
               

               
Cow position:
               
chr11:42044223-42043918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
138-494
               

               
Cow position:
               
chr11:33348417-33348066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
104, 48
               

               
Conread position:
               
140-478
               

               
Cow position:
               
chr11:2092110-2092439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 43
               

               
Conread position:
               
142-405
               

               
Cow position:
               
chr11:18591662-18591398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
144-476
               

               
Cow position:
               
chr11:64044012-64044337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
144-496
               

               
Cow position:
               
chr11:29960078-29960423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
147-405
               

               
Cow position:
               
chr11:61246681-61246423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
147-448
               

               
Cow position:
               
chr11:19501001-19500713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
148-429
               

               
Cow position:
               
chr11:38874624-38874342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
148-450
               

               
Cow position:
               
chr11:17660872-17661164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
149-447
               

               
Cow position:
               
chr11:65762818-65762513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 38
               

               
Conread position:
               
149-450
               

               
Cow position:
               
chr11:69810682-69810984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
37, 132
               

               
Conread position:
               
150-342
               

               
Cow position:
               
chr11:58140414-58140609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
151-349
               

               
Cow position:
               
chr11:5526794-5526598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr11:39440528-39440295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr11:68631913-68631678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 126
               

               
Conread position:
               
152-388
               

               
Cow position:
               
chr11:61876547-61876785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 176
               

               
Conread position:
               
152-388
               

               
Cow position:
               
chr11:83767994-83768233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
35, 170
               

               
Conread position:
               
152-418
               

               
Cow position:
               
chr11:35737628-35737360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 199
               

               
Conread position:
               
152-450
               

               
Cow position:
               
chr11:67454668-67454970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
152-494
               

               
Cow position:
               
chr11:15772941-15772585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 183
               

               
Conread position:
               
154-478
               

               
Cow position:
               
chr11:34145133-34144813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
154-494
               

               
Cow position:
               
chr11:11557952-11558299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
156-378
               

               
Cow position:
               
chr11:36301296-36301068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 161
               

               
Conread position:
               
157-438
               

               
Cow position:
               
chr11:67550578-67550309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
158-450
               

               
Cow position:
               
chr11:23586422-23586719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
159-409
               

               
Cow position:
               
chr11:2811935-2811690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
159-418
               

               
Cow position:
               
chr11:55875680-55875937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
159-494
               

               
Cow position:
               
chr11:65607905-65607565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
27, 159
               

               
Conread position:
               
160-432
               

               
Cow position:
               
chr11:36286488-36286758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
161-454
               

               
Cow position:
               
chr11:63434268-63433975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 155
               

               
Conread position:
               
161-483
               

               
Cow position:
               
chr11:61958959-61958634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 285
               

               
Conread position:
               
162-380
               

               
Cow position:
               
chr11:36672259-36672032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 171
               

               
Conread position:
               
163-482
               

               
Cow position:
               
chr11:19592205-19591879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
23, 168
               

               
Conread position:
               
165-418
               

               
Cow position:
               
chr11:49231668-49231922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
165-420
               

               
Cow position:
               
chr11:72375894-72375632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
165-494
               

               
Cow position:
               
chr11:71493066-71492734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 168
               

               
Conread position:
               
166-494
               

               
Cow position:
               
chr11:27913070-27913413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
169-488
               

               
Cow position:
               
chr11:14470169-14470487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
170-351
               

               
Cow position:
               
chr11:47850826-47851008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
113, 145
               

               
Conread position:
               
170-415
               

               
Cow position:
               
chr11:84925420-84925172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 143
               

               
Conread position:
               
172-496
               

               
Cow position:
               
chr11:15338876-15339190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
290, 15
               

               
Conread position:
               
175-413
               

               
Cow position:
               
chr11:5088040-5087802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
176-418
               

               
Cow position:
               
chr11:13592544-13592784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
177-415
               

               
Cow position:
               
chr11:2874192-2874443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 158
               

               
Conread position:
               
178-439
               

               
Cow position:
               
chr11:37804746-37804484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
184-454
               

               
Cow position:
               
chr11:35775151-35775422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 152
               

               
Conread position:
               
184-483
               

               
Cow position:
               
chr11:16907230-16906934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
185-415
               

               
Cow position:
               
chr11:7494927-7494695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 126
               

               
Conread position:
               
185-479
               

               
Cow position:
               
chr11:34646406-34646702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
186-436
               

               
Cow position:
               
chr11:82796470-82796222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 115
               

               
Conread position:
               
187-478
               

               
Cow position:
               
chr11:30954815-30955108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 144
               

               
Conread position:
               
187-494
               

               
Cow position:
               
chr11:42296803-42296498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
189-416
               

               
Cow position:
               
chr11:7873966-7874185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
189-478
               

               
Cow position:
               
chr11:26845762-26845485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
280, 26
               

               
Conread position:
               
190-449
               

               
Cow position:
               
chr11:5286-5543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
190-494
               

               
Cow position:
               
chr11:26144279-26143966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 146
               

               
Conread position:
               
191-475
               

               
Cow position:
               
chr11:9270907-9270622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 137
               

               
Conread position:
               
191-478
               

               
Cow position:
               
chr11:47004171-47004457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
191-478
               

               
Cow position:
               
chr11:70086145-70086444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 233
               

               
Conread position:
               
191-494
               

               
Cow position:
               
chr11:83687607-83687305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
195-477
               

               
Cow position:
               
chr11:63909833-63909556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
195-494
               

               
Cow position:
               
chr11:30830791-30830490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 260
               

               
Conread position:
               
196-420
               

               
Cow position:
               
chr11:71008961-71009179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
198-418
               

               
Cow position:
               
chr11:41176122-41175900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
199-419
               

               
Cow position:
               
chr11:261425-261218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
201-447
               

               
Cow position:
               
chr11:75874921-75874677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
202-450
               

               
Cow position:
               
chr11:55494514-55494760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
203-485
               

               
Cow position:
               
chr11:40479022-40478738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 125
               

               
Conread position:
               
203-492
               

               
Cow position:
               
chr11:80556053-80556344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 141
               

               
Conread position:
               
204-494
               

               
Cow position:
               
chr11:81135328-81135041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
205-492
               

               
Cow position:
               
chr11:48295867-48296154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 188
               

               
Conread position:
               
207-486
               

               
Cow position:
               
chr11:51729125-51729402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
89, 73
               

               
Conread position:
               
208-433
               

               
Cow position:
               
chr11:80756946-80756717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
208-494
               

               
Cow position:
               
chr11:17493316-17493612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
209-477
               

               
Cow position:
               
chr11:40395278-40395553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
210-449
               

               
Cow position:
               
chr11:13075951-13075732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
213-429
               

               
Cow position:
               
chr11:11646912-11647132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 143
               

               
Conread position:
               
213-450
               

               
Cow position:
               
chr11:2576061-2575823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
116, 109
               

               
Conread position:
               
213-450
               

               
Cow position:
               
chr11:45434929-45435161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
154, 63
               

               
Conread position:
               
213-488
               

               
Cow position:
               
chr11:71390721-71390448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 209
               

               
Conread position:
               
213-494
               

               
Cow position:
               
chr11:28993889-28993620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
215-368
               

               
Cow position:
               
chr11:70741131-70740978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
72, 96
               

               
Conread position:
               
215-450
               

               
Cow position:
               
chr11:5201805-5201571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr11:35213316-35213041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr11:56187464-56187735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
111, 97
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr11:63435362-63435650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
76, 175
               

               
Conread position:
               
218-478
               

               
Cow position:
               
chr11:69075756-69076022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 156
               

               
Conread position:
               
218-479
               

               
Cow position:
               
chr11:18851766-18852018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
242, 72
               

               
Conread position:
               
224-383
               

               
Cow position:
               
chr11:33825037-33824874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 95
               

               
Conread position:
               
224-494
               

               
Cow position:
               
chr11:23407315-23407588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 243
               

               
Conread position:
               
226-494
               

               
Cow position:
               
chr11:63999234-63998962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
69, 136
               

               
Conread position:
               
229-450
               

               
Cow position:
               
chr11:65767056-65767280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
59, 86
               

               
Conread position:
               
231-486
               

               
Cow position:
               
chr11:47772531-47772276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
231-493
               

               
Cow position:
               
chr11:69977838-69978095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
227, 81
               

               
Conread position:
               
235-443
               

               
Cow position:
               
chr11:80537351-80537561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr11:62788993-62789255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
241-478
               

               
Cow position:
               
chr11:41293948-41293710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
245-450
               

               
Cow position:
               
chr11:49873013-49872807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
245-482
               

               
Cow position:
               
chr11:40608722-40608485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
248-448
               

               
Cow position:
               
chr11:6194083-6194284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
250-438
               

               
Cow position:
               
chr11:69392436-69392631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
250-486
               

               
Cow position:
               
chr11:26275078-26274845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
256-493
               

               
Cow position:
               
chr11:39060715-39060478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
264-448
               

               
Cow position:
               
chr11:249591-249403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
268-494
               

               
Cow position:
               
chr11:48085815-48086046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 219
               

               
Conread position:
               
278-494
               

               
Cow position:
               
chr11:62813042-62812824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
279-476
               

               
Cow position:
               
chr11:35803044-35803246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
279-494
               

               
Cow position:
               
chr11:17676460-17676247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
181, 34
               

               
Conread position:
               
283-433
               

               
Cow position:
               
chr11:54218631-54218778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
285-478
               

               
Cow position:
               
chr11:17721888-17721693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
285-494
               

               
Cow position:
               
chr11:63866738-63866533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
286-461
               

               
Cow position:
               
chr11:33409343-33409170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
286-478
               

               
Cow position:
               
chr11:24599472-24599277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
286-494
               

               
Cow position:
               
chr11:42160143-42159932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
24, 111
               

               
Conread position:
               
288-450
               

               
Cow position:
               
chr11:28168505-28168342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
289-494
               

               
Cow position:
               
chr11:31410963-31410752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
293-494
               

               
Cow position:
               
chr11:4637249-4637047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
318-473
               

               
Cow position:
               
chr11:36329086-36328931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 110
               

               
Conread position:
               
319-477
               

               
Cow position:
               
chr11:18447544-18447384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
321-492
               

               
Cow position:
               
chr11:897625-897801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
328-494
               

               
Cow position:
               
chr11:21885792-21885961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 82
               
Show alignments to all cow chromosomes.