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Cow genome map

           
Conread name:
           
rsug23_m4.y1
        

               
Conread position:
               
70-483
               

               
Cow position:
               
chr6:5609681-5609275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 33
               

               
Conread position:
               
90-494
               

               
Cow position:
               
chr6:2547021-2547439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 33
               

               
Conread position:
               
91-482
               

               
Cow position:
               
chr6:16423475-16423877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 129
               

               
Conread position:
               
91-488
               

               
Cow position:
               
chr6:50090421-50090827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
97-383
               

               
Cow position:
               
chr6:16191451-16191749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
101-361
               

               
Cow position:
               
chr6:8187731-8187471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
103-490
               

               
Cow position:
               
chr6:7128610-7128224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
105-496
               

               
Cow position:
               
chr6:47305132-47305528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 82
               

               
Conread position:
               
107-418
               

               
Cow position:
               
chr6:46865798-46865486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
110-481
               

               
Cow position:
               
chr6:63299228-63298862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
175, 77
               

               
Conread position:
               
111-383
               

               
Cow position:
               
chr6:44598080-44597804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 219
               

               
Conread position:
               
113-369
               

               
Cow position:
               
chr6:61137169-61137432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
113-418
               

               
Cow position:
               
chr6:22503122-22502805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
73, 226
               

               
Conread position:
               
113-483
               

               
Cow position:
               
chr6:37199744-37199364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
47, 289
               

               
Conread position:
               
113-494
               

               
Cow position:
               
chr6:45690793-45690431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 167
               

               
Conread position:
               
114-438
               

               
Cow position:
               
chr6:17997513-17997194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
124, 73
               

               
Conread position:
               
114-448
               

               
Cow position:
               
chr6:17414649-17414309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
114-450
               

               
Cow position:
               
chr6:28977227-28976902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 72
               

               
Conread position:
               
114-488
               

               
Cow position:
               
chr6:46860366-46859988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 166
               

               
Conread position:
               
115-272
               

               
Cow position:
               
chr6:89105-88945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
115-291
               

               
Cow position:
               
chr6:64449196-64449370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
115-409
               

               
Cow position:
               
chr6:62925190-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
168, 72
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr6:16700062-16700367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr6:55040413-55040108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
71, 192
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr6:63286706-63286399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
115-438
               

               
Cow position:
               
chr6:28811190-28810872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr6:13040256-13040577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 164
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr6:31525851-31526184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr6:36470760-36470424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
115-454
               

               
Cow position:
               
chr6:35435807-35436136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
183, 72
               

               
Conread position:
               
115-474
               

               
Cow position:
               
chr6:47339545-47339191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
196, 71
               

               
Conread position:
               
115-494
               

               
Cow position:
               
chr6:21110773-21111133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
127, 72
               

               
Conread position:
               
116-270
               

               
Cow position:
               
chr6:34235629-34235477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 71
               

               
Conread position:
               
116-296
               

               
Cow position:
               
chr6:1783968-1783794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr6:40264393-40264202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr6:24515389-24515183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
195, 71
               

               
Conread position:
               
116-325
               

               
Cow position:
               
chr6:28476986-28477192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
175, 70
               

               
Conread position:
               
116-326
               

               
Cow position:
               
chr6:48344132-48344347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-336
               

               
Cow position:
               
chr6:20451907-20452131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-372
               

               
Cow position:
               
chr6:34031472-34031721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
175, 65
               

               
Conread position:
               
116-389
               

               
Cow position:
               
chr6:21542124-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 76
               

               
Conread position:
               
116-391
               

               
Cow position:
               
chr6:8195096-8195375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 214
               

               
Conread position:
               
116-404
               

               
Cow position:
               
chr6:11192648-11192372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
176, 66
               

               
Conread position:
               
116-414
               

               
Cow position:
               
chr6:48169749-48170040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
116-416
               

               
Cow position:
               
chr6:58073849-58074152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr6:5095746-5095436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr6:14949677-14949375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr6:42565490-42565794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr6:44578591-44578295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr6:62796213-62795897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
116-420
               

               
Cow position:
               
chr6:323506-323197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 162
               

               
Conread position:
               
116-430
               

               
Cow position:
               
chr6:29210305-29210613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
171, 62
               

               
Conread position:
               
116-431
               

               
Cow position:
               
chr6:38218476-38218785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-432
               

               
Cow position:
               
chr6:9751236-9750937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
195, 76
               

               
Conread position:
               
116-433
               

               
Cow position:
               
chr6:66874166-66874472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
171, 59
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr6:19681720-19681399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr6:66131112-66131432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
116-447
               

               
Cow position:
               
chr6:528472-528149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
116-448
               

               
Cow position:
               
chr6:24031179-24031512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 164
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr6:7131067-7130742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
200, 70
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr6:8209785-8209468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr6:9008807-9008474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
207, 71
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr6:32269066-32268750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr6:36202632-36202956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 70
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr6:38614628-38614950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr6:60350495-60350154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-466
               

               
Cow position:
               
chr6:21869841-21869495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 70
               

               
Conread position:
               
116-472
               

               
Cow position:
               
chr6:53651845-53652203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 83
               

               
Conread position:
               
116-473
               

               
Cow position:
               
chr6:8965894-8966261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chr6:44194741-44194382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 171
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr6:38641302-38641658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr6:51674722-51675073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chr6:54867315-54867686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr6:6343230-6343601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 72
               

               
Conread position:
               
116-486
               

               
Cow position:
               
chr6:21231340-21231696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 71
               

               
Conread position:
               
116-486
               

               
Cow position:
               
chr6:56849822-56850193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
147, 70
               

               
Conread position:
               
116-490
               

               
Cow position:
               
chr6:46465632-46465998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 71
               

               
Conread position:
               
116-493
               

               
Cow position:
               
chr6:38853854-38853473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 153
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:7190315-7189945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
118, 71
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:8637079-8637461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 82
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:10106192-10105796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 228
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:13688007-13687632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 77
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:24468588-24468215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:26915134-26915512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 95
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:51581454-51581071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 281
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:53024994-53024627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr6:61269134-61269495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 59
               

               
Conread position:
               
116-496
               

               
Cow position:
               
chr6:15938048-15937666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
117-278
               

               
Cow position:
               
chr6:28559219-28559389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
117-311
               

               
Cow position:
               
chr6:32210822-32210628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
170, 64
               

               
Conread position:
               
117-336
               

               
Cow position:
               
chr6:46245518-46245294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
75, 211
               

               
Conread position:
               
117-351
               

               
Cow position:
               
chr6:16411000-16411230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr6:9322964-9323214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
117-382
               

               
Cow position:
               
chr6:44098889-44099157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
104, 70
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr6:18961718-18961444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr6:24237398-24237129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 213
               

               
Conread position:
               
117-415
               

               
Cow position:
               
chr6:20329826-20330111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
69, 183
               

               
Conread position:
               
117-417
               

               
Cow position:
               
chr6:7989608-7989310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr6:12337789-12338099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 69
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr6:54430624-54430936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 199
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr6:60442223-60442515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
112, 69
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr6:1770390-1770089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr6:8562521-8562829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
69, 274
               

               
Conread position:
               
117-431
               

               
Cow position:
               
chr6:26728722-26728413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
117-433
               

               
Cow position:
               
chr6:12092179-12091872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
170, 68
               

               
Conread position:
               
117-436
               

               
Cow position:
               
chr6:130360-130039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 199
               

               
Conread position:
               
117-436
               

               
Cow position:
               
chr6:899479-899169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 24
               

               
Conread position:
               
117-448
               

               
Cow position:
               
chr6:49002920-49002604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
117-448
               

               
Cow position:
               
chr6:56842964-56843290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 68
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr6:1886858-1886529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
117-475
               

               
Cow position:
               
chr6:38440987-38441338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
168, 70
               

               
Conread position:
               
117-476
               

               
Cow position:
               
chr6:35990418-35990067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
274, 70
               

               
Conread position:
               
117-477
               

               
Cow position:
               
chr6:63720004-63720365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr6:38207691-38207323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 233
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr6:54864862-54864491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
125, 69
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr6:67214546-67214916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
117-479
               

               
Cow position:
               
chr6:6400753-6401120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 108
               

               
Conread position:
               
117-484
               

               
Cow position:
               
chr6:61631814-61631435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
31, 211
               

               
Conread position:
               
117-485
               

               
Cow position:
               
chr6:55282485-55282120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 108
               

               
Conread position:
               
117-486
               

               
Cow position:
               
chr6:32121716-32122079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 69
               

               
Conread position:
               
117-487
               

               
Cow position:
               
chr6:35471721-35471332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 300
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr6:36196019-36196387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 71
               

               
Conread position:
               
117-490
               

               
Cow position:
               
chr6:52412659-52413042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
69, 231
               

               
Conread position:
               
117-490
               

               
Cow position:
               
chr6:65870829-65871215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 309
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:4383297-4383658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:15242639-15243023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:23695802-23696183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:31535766-31535389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 146
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:35842462-35842844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
117, 63
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:39358536-39358159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
147, 69
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:40031998-40032371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:48281800-48282179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 71
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:49421972-49421608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
341, 49
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:52478623-52478227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:53460767-53460388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 70
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:58732509-58732116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
66, 201
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr6:60144372-60144015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
170, 64
               

               
Conread position:
               
117-496
               

               
Cow position:
               
chr6:32125872-32126238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
69, 107
               

               
Conread position:
               
117-496
               

               
Cow position:
               
chr6:51835205-51835584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 69
               

               
Conread position:
               
118-375
               

               
Cow position:
               
chr6:8804722-8804466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
169, 69
               

               
Conread position:
               
118-380
               

               
Cow position:
               
chr6:36928457-36928729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
118-405
               

               
Cow position:
               
chr6:24961951-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 145
               

               
Conread position:
               
118-416
               

               
Cow position:
               
chr6:17090401-17090703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
68, 223
               

               
Conread position:
               
118-417
               

               
Cow position:
               
chr6:20157130-20157438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 220
               

               
Conread position:
               
118-417
               

               
Cow position:
               
chr6:59069822-59069519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 237
               

               
Conread position:
               
118-418
               

               
Cow position:
               
chr6:3929126-3929424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
173, 24
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr6:46570924-46571243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 68
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr6:47519852-47520191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr6:49398810-49398482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 198
               

               
Conread position:
               
118-474
               

               
Cow position:
               
chr6:10176497-10176137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
118-492
               

               
Cow position:
               
chr6:29484897-29485265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 17
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr6:6060751-6060386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
119, 68
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr6:54490935-54490562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
119-275
               

               
Cow position:
               
chr6:47988994-47989147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
119-308
               

               
Cow position:
               
chr6:6264450-6264638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
119-309
               

               
Cow position:
               
chr6:58076031-58076227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
112, 73
               

               
Conread position:
               
119-375
               

               
Cow position:
               
chr6:6460346-6460605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 200
               

               
Conread position:
               
119-418
               

               
Cow position:
               
chr6:63272807-63272505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
67, 156
               

               
Conread position:
               
119-429
               

               
Cow position:
               
chr6:54365518-54365211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
120, 52
               

               
Conread position:
               
119-430
               

               
Cow position:
               
chr6:28318216-28318515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
168, 68
               

               
Conread position:
               
119-438
               

               
Cow position:
               
chr6:18988023-18988334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
167, 68
               

               
Conread position:
               
119-438
               

               
Cow position:
               
chr6:27110395-27110723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 259
               

               
Conread position:
               
119-438
               

               
Cow position:
               
chr6:36652226-36652548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
168, 68
               

               
Conread position:
               
119-449
               

               
Cow position:
               
chr6:12551074-12551406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
119-450
               

               
Cow position:
               
chr6:4864733-4864409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
168, 64
               

               
Conread position:
               
119-450
               

               
Cow position:
               
chr6:21062076-21061748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
119-450
               

               
Cow position:
               
chr6:53519816-53519486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
119-494
               

               
Cow position:
               
chr6:15305390-15305755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 11
               

               
Conread position:
               
120-450
               

               
Cow position:
               
chr6:9452965-9452631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 158
               

               
Conread position:
               
120-450
               

               
Cow position:
               
chr6:20098156-20097821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
120-457
               

               
Cow position:
               
chr6:28414842-28414500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
57, 62
               

               
Conread position:
               
120-478
               

               
Cow position:
               
chr6:9736835-9736488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
120-478
               

               
Cow position:
               
chr6:14839222-14838877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
66, 198
               

               
Conread position:
               
120-488
               

               
Cow position:
               
chr6:37149002-37149368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 10
               

               
Conread position:
               
122-450
               

               
Cow position:
               
chr6:8788227-8787899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
123-408
               

               
Cow position:
               
chr6:1944537-1944809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 64
               

               
Conread position:
               
123-438
               

               
Cow position:
               
chr6:24004359-24004662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
124-477
               

               
Cow position:
               
chr6:47574717-47575072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 63
               

               
Conread position:
               
126-383
               

               
Cow position:
               
chr6:49410875-49410626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
126-418
               

               
Cow position:
               
chr6:34475736-34475455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
127-482
               

               
Cow position:
               
chr6:47799113-47799462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
115, 48
               

               
Conread position:
               
127-494
               

               
Cow position:
               
chr6:50577335-50577702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 231
               

               
Conread position:
               
130-291
               

               
Cow position:
               
chr6:25008532-25008688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
131-477
               

               
Cow position:
               
chr6:15300998-15300667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
44, 57
               

               
Conread position:
               
132-379
               

               
Cow position:
               
chr6:3978847-3978595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
133-332
               

               
Cow position:
               
chr6:18968952-18968760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
162, 28
               

               
Conread position:
               
133-438
               

               
Cow position:
               
chr6:52901062-52901364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 38
               

               
Conread position:
               
134-418
               

               
Cow position:
               
chr6:54936399-54936685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
134-486
               

               
Cow position:
               
chr6:1499460-1499809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
137-379
               

               
Cow position:
               
chr6:9838987-9839239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
107, 49
               

               
Conread position:
               
137-494
               

               
Cow position:
               
chr6:59104433-59104783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
255, 52
               

               
Conread position:
               
138-478
               

               
Cow position:
               
chr6:35993403-35993750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
48, 183
               

               
Conread position:
               
138-478
               

               
Cow position:
               
chr6:60819341-60819681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
104, 49
               

               
Conread position:
               
140-478
               

               
Cow position:
               
chr6:47355652-47355991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
166, 47
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chr6:39093573-39093927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
146, 45
               

               
Conread position:
               
141-494
               

               
Cow position:
               
chr6:27888176-27888531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
142-478
               

               
Cow position:
               
chr6:54991172-54990832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
143-492
               

               
Cow position:
               
chr6:11246595-11246950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
144, 40
               

               
Conread position:
               
146-488
               

               
Cow position:
               
chr6:120073-120424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
147-372
               

               
Cow position:
               
chr6:40834638-40834408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
148-418
               

               
Cow position:
               
chr6:60783706-60783976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
148-421
               

               
Cow position:
               
chr6:48988274-48988539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
148-450
               

               
Cow position:
               
chr6:47640601-47640294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
149-483
               

               
Cow position:
               
chr6:15243088-15243427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
150-450
               

               
Cow position:
               
chr6:6965545-6965262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
174, 16
               

               
Conread position:
               
151-416
               

               
Cow position:
               
chr6:61608346-61608616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
152-379
               

               
Cow position:
               
chr6:5445463-5445690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
152-415
               

               
Cow position:
               
chr6:24934790-24934523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 162
               

               
Conread position:
               
152-418
               

               
Cow position:
               
chr6:32420975-32421253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
34, 159
               

               
Conread position:
               
152-418
               

               
Cow position:
               
chr6:51718545-51718815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
152-428
               

               
Cow position:
               
chr6:12543093-12542814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
135, 40
               

               
Conread position:
               
153-421
               

               
Cow position:
               
chr6:78071-77807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
153-494
               

               
Cow position:
               
chr6:48112045-48112380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 34
               

               
Conread position:
               
154-448
               

               
Cow position:
               
chr6:58590116-58590409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
154-494
               

               
Cow position:
               
chr6:19264658-19264314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
156-450
               

               
Cow position:
               
chr6:60667267-60667548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
159-418
               

               
Cow position:
               
chr6:50984071-50984328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
159-418
               

               
Cow position:
               
chr6:67323163-67323415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
159-486
               

               
Cow position:
               
chr6:60739862-60740194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
160-490
               

               
Cow position:
               
chr6:4692136-4691801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 281
               

               
Conread position:
               
161-494
               

               
Cow position:
               
chr6:58370593-58370931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
163-413
               

               
Cow position:
               
chr6:4559453-4559204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
165-439
               

               
Cow position:
               
chr6:54036282-54036016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
165-483
               

               
Cow position:
               
chr6:46283145-46282829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 21
               

               
Conread position:
               
165-486
               

               
Cow position:
               
chr6:9219126-9219439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
165-494
               

               
Cow position:
               
chr6:57571326-57571662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
166-421
               

               
Cow position:
               
chr6:16316160-16316425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
167-388
               

               
Cow position:
               
chr6:28065997-28066222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 163
               

               
Conread position:
               
169-418
               

               
Cow position:
               
chr6:17313587-17313841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 165
               

               
Conread position:
               
170-418
               

               
Cow position:
               
chr6:38609826-38610074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
170-418
               

               
Cow position:
               
chr6:67618101-67617842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
176-418
               

               
Cow position:
               
chr6:45388195-45388431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
110, 5
               

               
Conread position:
               
176-475
               

               
Cow position:
               
chr6:60118010-60118313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 135
               

               
Conread position:
               
176-494
               

               
Cow position:
               
chr6:38640096-38640418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
101, 5
               

               
Conread position:
               
182-420
               

               
Cow position:
               
chr6:62669743-62669973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
182-421
               

               
Cow position:
               
chr6:1371358-1371117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
185-403
               

               
Cow position:
               
chr6:12829350-12829134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
132, 23
               

               
Conread position:
               
187-439
               

               
Cow position:
               
chr6:15022684-15022420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
189-383
               

               
Cow position:
               
chr6:37376647-37376443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
190-482
               

               
Cow position:
               
chr6:19292676-19292968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
191-421
               

               
Cow position:
               
chr6:16266597-16266833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 163
               

               
Conread position:
               
191-450
               

               
Cow position:
               
chr6:50975936-50976186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
191-454
               

               
Cow position:
               
chr6:45065136-45064875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
106, 49
               

               
Conread position:
               
191-494
               

               
Cow position:
               
chr6:23402111-23401811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
191-494
               

               
Cow position:
               
chr6:35725973-35726274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
192-418
               

               
Cow position:
               
chr6:16261665-16261884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
193-494
               

               
Cow position:
               
chr6:32287518-32287815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
94, 134
               

               
Conread position:
               
195-486
               

               
Cow position:
               
chr6:7119729-7119446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
197-450
               

               
Cow position:
               
chr6:58597620-58597368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
114, 80
               

               
Conread position:
               
197-493
               

               
Cow position:
               
chr6:21514735-21514422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 255
               

               
Conread position:
               
200-482
               

               
Cow position:
               
chr6:61524311-61524034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
200-488
               

               
Cow position:
               
chr6:59603320-59603033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
201-494
               

               
Cow position:
               
chr6:22850357-22850068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
208-416
               

               
Cow position:
               
chr6:27240111-27239902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
78, 105
               

               
Conread position:
               
213-450
               

               
Cow position:
               
chr6:1429539-1429777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
214-450
               

               
Cow position:
               
chr6:59718697-59718934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 126
               

               
Conread position:
               
215-421
               

               
Cow position:
               
chr6:54208237-54208026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 139
               

               
Conread position:
               
217-450
               

               
Cow position:
               
chr6:66375426-66375195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
219-478
               

               
Cow position:
               
chr6:18118145-18117881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
222-454
               

               
Cow position:
               
chr6:10487496-10487727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
223-495
               

               
Cow position:
               
chr6:60274098-60273825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
224-483
               

               
Cow position:
               
chr6:37332018-37332281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
56, 51
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr6:694228-693961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
188, 45
               

               
Conread position:
               
234-478
               

               
Cow position:
               
chr6:23466108-23465864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
236-441
               

               
Cow position:
               
chr6:22985935-22985726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
239-492
               

               
Cow position:
               
chr6:17068723-17068470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
244-494
               

               
Cow position:
               
chr6:67643760-67643505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
245-478
               

               
Cow position:
               
chr6:9302784-9302551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
247-410
               

               
Cow position:
               
chr6:67615497-67615332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
248-414
               

               
Cow position:
               
chr6:7170412-7170246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
248-486
               

               
Cow position:
               
chr6:60516763-60517002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
249-415
               

               
Cow position:
               
chr6:60468173-60468341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
257-487
               

               
Cow position:
               
chr6:66570380-66570613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
267-478
               

               
Cow position:
               
chr6:3350973-3351199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
268-447
               

               
Cow position:
               
chr6:2078865-2078680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
268-450
               

               
Cow position:
               
chr6:32853141-32853325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 119
               

               
Conread position:
               
269-450
               

               
Cow position:
               
chr6:49437294-49437471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr6:34119387-34119216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr6:60266214-60266045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
282-494
               

               
Cow position:
               
chr6:48097631-48097416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
285-474
               

               
Cow position:
               
chr6:62056586-62056779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
286-479
               

               
Cow position:
               
chr6:63065799-63065996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
290-473
               

               
Cow position:
               
chr6:53089986-53090172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
294-494
               

               
Cow position:
               
chr6:58725358-58725551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
175, 20
               

               
Conread position:
               
322-494
               

               
Cow position:
               
chr6:30023895-30024064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
327-494
               

               
Cow position:
               
chr6:1866747-1866911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
328-450
               

               
Cow position:
               
chr6:43651768-43651890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
343-450
               

               
Cow position:
               
chr6:23938091-23938198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.