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Cow genome map

           
Conread name:
           
rsug23_m4.y1
        

               
Conread position:
               
81-445
               

               
Cow position:
               
chr9:5218877-5219236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
82-477
               

               
Cow position:
               
chr9:21888468-21888071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 105
               

               
Conread position:
               
90-383
               

               
Cow position:
               
chr9:49983399-49983691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
92-421
               

               
Cow position:
               
chr9:43207090-43207414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
94, 63
               

               
Conread position:
               
95-482
               

               
Cow position:
               
chr9:33598267-33597882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 92
               

               
Conread position:
               
99-416
               

               
Cow position:
               
chr9:22638385-22638067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
101-492
               

               
Cow position:
               
chr9:9595673-9596063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
103-494
               

               
Cow position:
               
chr9:56011775-56011388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 186
               

               
Conread position:
               
107-418
               

               
Cow position:
               
chr9:39681630-39681302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
108-478
               

               
Cow position:
               
chr9:18216827-18217199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
78, 172
               

               
Conread position:
               
112-411
               

               
Cow position:
               
chr9:38344163-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
112-450
               

               
Cow position:
               
chr9:16300302-16300638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
112-481
               

               
Cow position:
               
chr9:8636921-8636567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 74
               

               
Conread position:
               
112-481
               

               
Cow position:
               
chr9:38846080-38846433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 129
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chr9:34000349-34000568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
113-379
               

               
Cow position:
               
chr9:34918998-34919258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
129, 74
               

               
Conread position:
               
113-380
               

               
Cow position:
               
chr9:54997755-54998028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 208
               

               
Conread position:
               
114-348
               

               
Cow position:
               
chr9:26391035-26390801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
114-433
               

               
Cow position:
               
chr9:8724064-8723742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
13, 105
               

               
Conread position:
               
114-446
               

               
Cow position:
               
chr9:9443330-9443666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
120, 73
               

               
Conread position:
               
114-450
               

               
Cow position:
               
chr9:9753132-9753459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
114-494
               

               
Cow position:
               
chr9:41283293-41282897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
115-325
               

               
Cow position:
               
chr9:4128518-4128731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
162, 70
               

               
Conread position:
               
115-411
               

               
Cow position:
               
chr9:5442258-5441959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr9:8534417-8534727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr9:10011066-10010773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 70
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr9:32238648-32238344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr9:52407435-52407127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
115-438
               

               
Cow position:
               
chr9:17310296-17310619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
115-439
               

               
Cow position:
               
chr9:19714335-19714022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
126, 64
               

               
Conread position:
               
115-478
               

               
Cow position:
               
chr9:8288883-8288518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
178, 72
               

               
Conread position:
               
115-478
               

               
Cow position:
               
chr9:64559621-64559982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
115-494
               

               
Cow position:
               
chr9:17740678-17741056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 162
               

               
Conread position:
               
116-270
               

               
Cow position:
               
chr9:37017149-37016995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
118, 69
               

               
Conread position:
               
116-285
               

               
Cow position:
               
chr9:35101132-35100964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-290
               

               
Cow position:
               
chr9:10877601-10877780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
70, 90
               

               
Conread position:
               
116-291
               

               
Cow position:
               
chr9:35305855-35306027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 89
               

               
Conread position:
               
116-291
               

               
Cow position:
               
chr9:55118343-55118170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
116-304
               

               
Cow position:
               
chr9:27076986-27077169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr9:41995979-41995780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr9:42998206-42998397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
116-327
               

               
Cow position:
               
chr9:57951064-57951276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
116-333
               

               
Cow position:
               
chr9:58251811-58251590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 192
               

               
Conread position:
               
116-343
               

               
Cow position:
               
chr9:8546583-8546362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr9:18002684-18002920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
116-354
               

               
Cow position:
               
chr9:41653054-41652813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
70, 202
               

               
Conread position:
               
116-379
               

               
Cow position:
               
chr9:16538542-16538813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 207
               

               
Conread position:
               
116-379
               

               
Cow position:
               
chr9:42498094-42497830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
124, 71
               

               
Conread position:
               
116-386
               

               
Cow position:
               
chr9:37528721-37528459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 201
               

               
Conread position:
               
116-401
               

               
Cow position:
               
chr9:2022959-2022673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
116-417
               

               
Cow position:
               
chr9:23430877-23431182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 274
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr9:5501116-5500816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
171, 71
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr9:13181791-13182091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr9:17579580-17579276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 235
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chr9:35904486-35904782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
116-429
               

               
Cow position:
               
chr9:22114368-22114683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
116-433
               

               
Cow position:
               
chr9:20989189-20989510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chr9:17929037-17928700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
116-445
               

               
Cow position:
               
chr9:7634532-7634207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 65
               

               
Conread position:
               
116-446
               

               
Cow position:
               
chr9:20091303-20090981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 25
               

               
Conread position:
               
116-449
               

               
Cow position:
               
chr9:18072853-18073164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr9:5763365-5763699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 200
               

               
Conread position:
               
116-450
               

               
Cow position:
               
chr9:32371495-32371820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
116-454
               

               
Cow position:
               
chr9:34468328-34468652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
326, 31
               

               
Conread position:
               
116-472
               

               
Cow position:
               
chr9:40542379-40542042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
116-474
               

               
Cow position:
               
chr9:9624763-9625103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
116-475
               

               
Cow position:
               
chr9:33218687-33219042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
220, 70
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr9:56453597-56453239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 164
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr9:56773344-56772979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
116-481
               

               
Cow position:
               
chr9:1950184-1949820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
116-483
               

               
Cow position:
               
chr9:28726461-28726829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 29
               

               
Conread position:
               
116-485
               

               
Cow position:
               
chr9:7410047-7409663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
125, 71
               

               
Conread position:
               
116-485
               

               
Cow position:
               
chr9:59013070-59013444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 64
               

               
Conread position:
               
116-486
               

               
Cow position:
               
chr9:64091953-64091571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 202
               

               
Conread position:
               
116-490
               

               
Cow position:
               
chr9:13670901-13670521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 161
               

               
Conread position:
               
116-490
               

               
Cow position:
               
chr9:55287626-55288004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
42, 167
               

               
Conread position:
               
116-493
               

               
Cow position:
               
chr9:9402920-9403289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
176, 43
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:9552352-9551975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 70
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:15215416-15215805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:18381124-18380753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 76
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:24887462-24887090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:34287059-34286683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 52
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:38793284-38792900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 217
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:52689359-52689729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
116-494
               

               
Cow position:
               
chr9:55256285-55256664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
116-496
               

               
Cow position:
               
chr9:21459892-21460271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 72
               

               
Conread position:
               
116-496
               

               
Cow position:
               
chr9:29006825-29006442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 58
               

               
Conread position:
               
117-275
               

               
Cow position:
               
chr9:18419428-18419275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
155, 54
               

               
Conread position:
               
117-309
               

               
Cow position:
               
chr9:9491057-9490863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
125, 58
               

               
Conread position:
               
117-309
               

               
Cow position:
               
chr9:25958678-25958491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
117-311
               

               
Cow position:
               
chr9:24726414-24726609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
117-311
               

               
Cow position:
               
chr9:48343866-48343670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
117-319
               

               
Cow position:
               
chr9:5393315-5393109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 131
               

               
Conread position:
               
117-359
               

               
Cow position:
               
chr9:34666673-34666442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
117-364
               

               
Cow position:
               
chr9:36067170-36066929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
129, 70
               

               
Conread position:
               
117-369
               

               
Cow position:
               
chr9:21840339-21840084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
195, 69
               

               
Conread position:
               
117-378
               

               
Cow position:
               
chr9:1952005-1952267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
117-388
               

               
Cow position:
               
chr9:29082682-29082407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
70, 205
               

               
Conread position:
               
117-390
               

               
Cow position:
               
chr9:9516506-9516775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
199, 69
               

               
Conread position:
               
117-408
               

               
Cow position:
               
chr9:35533687-35533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
107, 70
               

               
Conread position:
               
117-409
               

               
Cow position:
               
chr9:9416143-9416423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
125, 69
               

               
Conread position:
               
117-410
               

               
Cow position:
               
chr9:36827389-36827106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
117-416
               

               
Cow position:
               
chr9:38961174-38961465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
114, 69
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr9:5531867-5531562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 197
               

               
Conread position:
               
117-418
               

               
Cow position:
               
chr9:35850163-35849867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
222, 70
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr9:648039-647737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
117-421
               

               
Cow position:
               
chr9:20681143-20681446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
117-428
               

               
Cow position:
               
chr9:22151823-22152132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
170, 75
               

               
Conread position:
               
117-433
               

               
Cow position:
               
chr9:21030580-21030256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
69, 202
               

               
Conread position:
               
117-436
               

               
Cow position:
               
chr9:26344720-26345023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 62
               

               
Conread position:
               
117-438
               

               
Cow position:
               
chr9:24997252-24997574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
117-444
               

               
Cow position:
               
chr9:5226900-5227235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 233
               

               
Conread position:
               
117-446
               

               
Cow position:
               
chr9:37069305-37069624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
117-449
               

               
Cow position:
               
chr9:45756621-45756296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr9:5756739-5757057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr9:6880034-6879710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
69, 149
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr9:26404053-26403716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 199
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr9:34697031-34697368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 208
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr9:41679999-41679678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
180, 51
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr9:43871236-43870906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
118, 54
               

               
Conread position:
               
117-450
               

               
Cow position:
               
chr9:44467085-44467408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
69, 204
               

               
Conread position:
               
117-471
               

               
Cow position:
               
chr9:54681766-54681416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
117-472
               

               
Cow position:
               
chr9:35167432-35167082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
117, 69
               

               
Conread position:
               
117-473
               

               
Cow position:
               
chr9:5509988-5509634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 94
               

               
Conread position:
               
117-474
               

               
Cow position:
               
chr9:22443347-22443722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
67, 214
               

               
Conread position:
               
117-476
               

               
Cow position:
               
chr9:47869271-47868921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 129
               

               
Conread position:
               
117-479
               

               
Cow position:
               
chr9:5246113-5245753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
216, 68
               

               
Conread position:
               
117-479
               

               
Cow position:
               
chr9:30138390-30138022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
189, 70
               

               
Conread position:
               
117-479
               

               
Cow position:
               
chr9:51620700-51620347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
117-483
               

               
Cow position:
               
chr9:52578269-52578641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
117-492
               

               
Cow position:
               
chr9:17871843-17872220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
117-492
               

               
Cow position:
               
chr9:55074871-55075241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr9:6397521-6397901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
120, 58
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr9:15805657-15806041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr9:26278909-26279287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 128
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr9:28747258-28747633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr9:51566223-51566613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
117-494
               

               
Cow position:
               
chr9:61997331-61997714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
70, 180
               

               
Conread position:
               
117-496
               

               
Cow position:
               
chr9:8998619-8998235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
117-496
               

               
Cow position:
               
chr9:11299433-11299790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
118-284
               

               
Cow position:
               
chr9:50976983-50977150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 67
               

               
Conread position:
               
118-286
               

               
Cow position:
               
chr9:1350183-1350351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
118-293
               

               
Cow position:
               
chr9:16182227-16182401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr9:4928894-4928658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
118-418
               

               
Cow position:
               
chr9:22696480-22696186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
118-421
               

               
Cow position:
               
chr9:53257797-53258094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr9:44831792-44832121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 90
               

               
Conread position:
               
118-450
               

               
Cow position:
               
chr9:64155593-64155920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 196
               

               
Conread position:
               
118-470
               

               
Cow position:
               
chr9:9405792-9406145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
118-470
               

               
Cow position:
               
chr9:31814114-31814478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
118-477
               

               
Cow position:
               
chr9:62400219-62399865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
118-478
               

               
Cow position:
               
chr9:31078822-31079179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
118-479
               

               
Cow position:
               
chr9:23388415-23388770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 68
               

               
Conread position:
               
118-479
               

               
Cow position:
               
chr9:33940870-33940505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
118-493
               

               
Cow position:
               
chr9:18342985-18342617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
333, 13
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr9:6192196-6192572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 142
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr9:34957788-34958167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 198
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr9:45285268-45285654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 70
               

               
Conread position:
               
118-494
               

               
Cow position:
               
chr9:48106856-48107226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chr9:1712223-1712467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
202, 23
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chr9:29034777-29035027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
169, 67
               

               
Conread position:
               
119-417
               

               
Cow position:
               
chr9:63194870-63194571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 197
               

               
Conread position:
               
119-450
               

               
Cow position:
               
chr9:42445720-42446052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
119, 73
               

               
Conread position:
               
119-465
               

               
Cow position:
               
chr9:29684409-29684058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 72
               

               
Conread position:
               
119-482
               

               
Cow position:
               
chr9:10144210-10144576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 159
               

               
Conread position:
               
119-482
               

               
Cow position:
               
chr9:34374667-34375024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
119-494
               

               
Cow position:
               
chr9:824217-823844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
121, 62
               

               
Conread position:
               
120-459
               

               
Cow position:
               
chr9:51204985-51204649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
120-466
               

               
Cow position:
               
chr9:54716361-54716690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
219, 21
               

               
Conread position:
               
120-492
               

               
Cow position:
               
chr9:5433896-5433524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
122, 67
               

               
Conread position:
               
120-496
               

               
Cow position:
               
chr9:32676947-32676557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
67, 216
               

               
Conread position:
               
122-415
               

               
Cow position:
               
chr9:62134363-62134658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
127-322
               

               
Cow position:
               
chr9:45170915-45171109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
158, 54
               

               
Conread position:
               
127-448
               

               
Cow position:
               
chr9:20416255-20416573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 131
               

               
Conread position:
               
127-482
               

               
Cow position:
               
chr9:59386523-59386865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
127-494
               

               
Cow position:
               
chr9:58979655-58979291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
59, 187
               

               
Conread position:
               
130-478
               

               
Cow position:
               
chr9:50139532-50139185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 55
               

               
Conread position:
               
130-494
               

               
Cow position:
               
chr9:5327505-5327147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
132-483
               

               
Cow position:
               
chr9:33119633-33119991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
132-496
               

               
Cow position:
               
chr9:13169419-13169782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 54
               

               
Conread position:
               
133-418
               

               
Cow position:
               
chr9:56087821-56088105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
133-432
               

               
Cow position:
               
chr9:5209832-5209529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 200
               

               
Conread position:
               
136-478
               

               
Cow position:
               
chr9:8563086-8562722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 272
               

               
Conread position:
               
136-494
               

               
Cow position:
               
chr9:43757768-43757426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
247, 50
               

               
Conread position:
               
137-275
               

               
Cow position:
               
chr9:33823342-33823205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
137-309
               

               
Cow position:
               
chr9:51005131-51004964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
137-446
               

               
Cow position:
               
chr9:49710088-49709782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 163
               

               
Conread position:
               
137-479
               

               
Cow position:
               
chr9:766906-767255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 184
               

               
Conread position:
               
137-494
               

               
Cow position:
               
chr9:32815882-32815537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
138-494
               

               
Cow position:
               
chr9:6840254-6839876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
48, 344
               

               
Conread position:
               
139-477
               

               
Cow position:
               
chr9:3186385-3186033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 222
               

               
Conread position:
               
143-482
               

               
Cow position:
               
chr9:11319394-11319738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
144-488
               

               
Cow position:
               
chr9:45141368-45141709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
145-309
               

               
Cow position:
               
chr9:50667660-50667493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
146-434
               

               
Cow position:
               
chr9:1916523-1916233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
148-482
               

               
Cow position:
               
chr9:4267747-4268084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 157
               

               
Conread position:
               
150-366
               

               
Cow position:
               
chr9:28786257-28786476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
152-302
               

               
Cow position:
               
chr9:45877463-45877619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr9:4674161-4674396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 170
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr9:35790547-35790315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 76
               

               
Conread position:
               
152-421
               

               
Cow position:
               
chr9:6339031-6338753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
154-477
               

               
Cow position:
               
chr9:53762928-53762595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
155-365
               

               
Cow position:
               
chr9:6117920-6118133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 138
               

               
Conread position:
               
155-478
               

               
Cow position:
               
chr9:1938352-1938024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
156-421
               

               
Cow position:
               
chr9:26440571-26440852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
158-494
               

               
Cow position:
               
chr9:64106130-64105788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
159-432
               

               
Cow position:
               
chr9:11313285-11313561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
159-478
               

               
Cow position:
               
chr9:1973164-1972848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
159-486
               

               
Cow position:
               
chr9:27279540-27279199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 165
               

               
Conread position:
               
159-492
               

               
Cow position:
               
chr9:61303223-61302890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
160-478
               

               
Cow position:
               
chr9:11123271-11123583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
161-488
               

               
Cow position:
               
chr9:17799850-17799522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
165-381
               

               
Cow position:
               
chr9:30195429-30195214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
166-450
               

               
Cow position:
               
chr9:19493244-19493535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
168-493
               

               
Cow position:
               
chr9:48628244-48627914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
177-416
               

               
Cow position:
               
chr9:25805038-25804797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
180-494
               

               
Cow position:
               
chr9:4340969-4341271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 6
               

               
Conread position:
               
183-494
               

               
Cow position:
               
chr9:41728456-41728145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
185-452
               

               
Cow position:
               
chr9:21823712-21823974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
185-494
               

               
Cow position:
               
chr9:12910202-12910515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
186-458
               

               
Cow position:
               
chr9:47500011-47500288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 91
               

               
Conread position:
               
186-482
               

               
Cow position:
               
chr9:50543228-50543525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
108, 46
               

               
Conread position:
               
188-482
               

               
Cow position:
               
chr9:9654118-9654407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
99, 155
               

               
Conread position:
               
190-467
               

               
Cow position:
               
chr9:55321829-55321551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
108, 73
               

               
Conread position:
               
191-291
               

               
Cow position:
               
chr9:49279665-49279565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
191-438
               

               
Cow position:
               
chr9:49417178-49416930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
191-478
               

               
Cow position:
               
chr9:30124111-30123829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
101, 158
               

               
Conread position:
               
191-493
               

               
Cow position:
               
chr9:19555565-19555265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 208
               

               
Conread position:
               
199-466
               

               
Cow position:
               
chr9:51720719-51720985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
201-439
               

               
Cow position:
               
chr9:43875541-43875777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
201-448
               

               
Cow position:
               
chr9:44921210-44921467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
201-478
               

               
Cow position:
               
chr9:8901043-8901326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
201-494
               

               
Cow position:
               
chr9:11168911-11168621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 115
               

               
Conread position:
               
203-481
               

               
Cow position:
               
chr9:40215422-40215147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
208-449
               

               
Cow position:
               
chr9:25557139-25556904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
121, 54
               

               
Conread position:
               
208-450
               

               
Cow position:
               
chr9:49292970-49293212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
213-493
               

               
Cow position:
               
chr9:60394882-60395163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 115
               

               
Conread position:
               
213-494
               

               
Cow position:
               
chr9:5263669-5263387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
213-494
               

               
Cow position:
               
chr9:26477385-26477097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
219-474
               

               
Cow position:
               
chr9:17518326-17518585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 96
               

               
Conread position:
               
221-368
               

               
Cow position:
               
chr9:42509275-42509129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
222-482
               

               
Cow position:
               
chr9:39011317-39011567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
224-479
               

               
Cow position:
               
chr9:52267599-52267850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 96
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr9:32669800-32670065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 7
               

               
Conread position:
               
234-496
               

               
Cow position:
               
chr9:7953047-7952780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
216, 79
               

               
Conread position:
               
237-494
               

               
Cow position:
               
chr9:6596090-6596340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
245-486
               

               
Cow position:
               
chr9:6189235-6189471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
245-493
               

               
Cow position:
               
chr9:33584546-33584798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
265-477
               

               
Cow position:
               
chr9:21080679-21080466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 145
               

               
Conread position:
               
265-488
               

               
Cow position:
               
chr9:41785337-41785108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
27, 184
               

               
Conread position:
               
268-494
               

               
Cow position:
               
chr9:23955870-23956092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
279-469
               

               
Cow position:
               
chr9:28754920-28754728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 148
               

               
Conread position:
               
279-479
               

               
Cow position:
               
chr9:32981969-32982170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
281-494
               

               
Cow position:
               
chr9:8628818-8629027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 5
               

               
Conread position:
               
284-468
               

               
Cow position:
               
chr9:54615206-54615390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
284-482
               

               
Cow position:
               
chr9:9686319-9686516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
286-492
               

               
Cow position:
               
chr9:17840581-17840792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
288-494
               

               
Cow position:
               
chr9:37199215-37199012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
309-473
               

               
Cow position:
               
chr9:63361648-63361815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 17
               

               
Conread position:
               
318-494
               

               
Cow position:
               
chr9:57131558-57131381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
333-478
               

               
Cow position:
               
chr9:55354659-55354511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               
Show alignments to all cow chromosomes.