Cow genome map
| Conread name: | rtes09_h18.y1 |
| Conread position: | 1-222 |
| Cow position: | chr14:448026-448247 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 1-245 |
| Cow position: | chr14:25860125-25860369 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 119 |
| Conread position: | 1-245 |
| Cow position: | chr14:25877176-25877420 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 112, 119 |
| Conread position: | 1-247 |
| Cow position: | chr14:447942-448188 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-254 |
| Cow position: | chr14:434079-434332 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 99 |
| Conread position: | 1-255 |
| Cow position: | chr14:433995-434249 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 1-255 |
| Cow position: | chr14:3080493-3080239 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 1-256 |
| Cow position: | chr14:680492-680747 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 105, 96 |
| Conread position: | 1-257 |
| Cow position: | chr14:680912-681168 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-257 |
| Cow position: | chr14:680996-681252 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-260 |
| Cow position: | chr14:447606-447865 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 188, 180 |
| Conread position: | 1-260 |
| Cow position: | chr14:447858-448117 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-260 |
| Cow position: | chr14:3061220-3060961 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 198, 183 |
| Conread position: | 1-260 |
| Cow position: | chr14:3155426-3155685 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 1-260 |
| Cow position: | chr14:3155510-3155769 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-260 |
| Cow position: | chr14:3156167-3156426 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-265 |
| Cow position: | chr14:447690-447954 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 96 |
| Conread position: | 1-265 |
| Cow position: | chr14:680576-680840 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 1-265 |
| Cow position: | chr14:3080409-3080145 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 99 |
| Conread position: | 1-265 |
| Cow position: | chr14:3080745-3080481 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-276 |
| Cow position: | chr14:3080073-3079799 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 1-277 |
| Cow position: | chr14:680828-681104 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 1-283 |
| Cow position: | chr14:3127753-3127471 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 279, 266 |
| Conread position: | 1-288 |
| Cow position: | chr14:3127921-3127633 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 1-293 |
| Cow position: | chr14:680744-681036 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 1-299 |
| Cow position: | chr14:3127837-3127539 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-248 |
| Cow position: | chr14:25859710-25859952 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 6-248 |
| Cow position: | chr14:25876761-25877003 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 6-248 |
| Cow position: | chr14:25877517-25877759 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 7-233 |
| Cow position: | chr14:3156257-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-244 |
| Cow position: | chr14:3155600-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 183, 174 |
| Conread position: | 7-247 |
| Cow position: | chr14:3079899-3079657 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 7-249 |
| Cow position: | chr14:25836826-25837068 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 137, 131 |
| Conread position: | 7-254 |
| Cow position: | chr14:3080571-3080324 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 7-255 |
| Cow position: | chr14:3061298-3061050 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-260 |
| Cow position: | chr14:447780-448033 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 7-265 |
| Cow position: | chr14:3156089-3156347 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr14:25836154-25836412 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-290 |
| Cow position: | chr14:3080823-3080540 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 105 |
| Conread position: | 7-299 |
| Cow position: | chr14:3127999-3127707 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-259 |
| Cow position: | chr14:3079982-3079731 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-265 |
| Cow position: | chr14:680415-680672 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 182, 173 |
| Conread position: | 8-300 |
| Cow position: | chr14:3101061-3100773 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 193, 39 |
| Conread position: | 9-248 |
| Cow position: | chr14:25877100-25877339 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 121 |
| Conread position: | 10-265 |
| Cow position: | chr14:3080652-3080397 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 22-254 |
| Cow position: | chr14:25876693-25876925 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 40-246 |
| Cow position: | chr14:3080202-3079996 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 40-255 |
| Cow position: | chr14:3080118-3079903 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-260 |
| Cow position: | chr14:3128050-3127830 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 40-265 |
| Cow position: | chr14:680699-680924 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 41-257 |
| Cow position: | chr14:433951-434167 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 88 |
| Conread position: | 49-245 |
| Cow position: | chr14:3061676-3061480 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 49-250 |
| Cow position: | chr14:447570-447771 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-256 |
| Cow position: | chr14:680372-680579 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 49-256 |
| Cow position: | chr14:3080277-3080070 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 154, 137 |
| Conread position: | 49-260 |
| Cow position: | chr14:433875-434086 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 49-265 |
| Cow position: | chr14:3061340-3061124 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-265 |
| Cow position: | chr14:3061424-3061208 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 49-265 |
| Cow position: | chr14:3156047-3156263 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-248 |
| Cow position: | chr14:25895443-25895630 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 67-248 |
| Cow position: | chr14:3155408-3155589 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 67-255 |
| Cow position: | chr14:3061742-3061554 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 117 |
Show alignments to all cow chromosomes.