Cow genome map
| Conread name: | rtes09_h18.y1 |
| Conread position: | 1-193 |
| Cow position: | chr25:414681-414489 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-232 |
| Cow position: | chr25:34447373-34447604 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 190, 184 |
| Conread position: | 1-247 |
| Cow position: | chr25:346463-346709 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 114 |
| Conread position: | 1-255 |
| Cow position: | chr25:3663946-3664200 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 1-255 |
| Cow position: | chr25:4657366-4657112 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 99 |
| Conread position: | 1-256 |
| Cow position: | chr25:25652455-25652710 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 188, 180 |
| Conread position: | 1-260 |
| Cow position: | chr25:25652539-25652798 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 96 |
| Conread position: | 1-260 |
| Cow position: | chr25:33127817-33128076 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-265 |
| Cow position: | chr25:33157290-33157026 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 1-265 |
| Cow position: | chr25:33298830-33299094 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 1-265 |
| Cow position: | chr25:33299082-33299346 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 1-265 |
| Cow position: | chr25:36801066-36801330 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-267 |
| Cow position: | chr25:25652203-25652469 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 1-276 |
| Cow position: | chr25:33298998-33299272 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 1-277 |
| Cow position: | chr25:34769605-34769329 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-283 |
| Cow position: | chr25:22235844-22236126 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 1-289 |
| Cow position: | chr25:34770109-34769823 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 1-289 |
| Cow position: | chr25:36800814-36801103 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 1-293 |
| Cow position: | chr25:33298578-33298870 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 1-298 |
| Cow position: | chr25:36800646-36800943 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 217, 212 |
| Conread position: | 1-308 |
| Cow position: | chr25:33157374-33157064 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 112 |
| Conread position: | 6-247 |
| Cow position: | chr25:366745-366986 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 109 |
| Conread position: | 7-223 |
| Cow position: | chr25:33145203-33145419 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 7-240 |
| Cow position: | chr25:33144870-33145100 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 100, 94 |
| Conread position: | 7-245 |
| Cow position: | chr25:4657276-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 7-245 |
| Cow position: | chr25:33157032-33156794 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 7-246 |
| Cow position: | chr25:34473861-34474100 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 7-248 |
| Cow position: | chr25:4657444-4657203 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 7-248 |
| Cow position: | chr25:25652965-25653206 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 7-248 |
| Cow position: | chr25:34769767-34769526 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 122, 126 |
| Conread position: | 7-249 |
| Cow position: | chr25:326518-326760 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 7-250 |
| Cow position: | chr25:33299172-33299415 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-257 |
| Cow position: | chr25:22236018-22236268 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 190, 202 |
| Conread position: | 7-265 |
| Cow position: | chr25:33127739-33127997 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr25:33127907-33128165 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr25:33145119-33145377 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr25:33157200-33156942 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 7-265 |
| Cow position: | chr25:33299508-33299766 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr25:34447127-34447385 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 7-265 |
| Cow position: | chr25:34447211-34447469 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr25:34769935-34769677 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr25:36800904-36801162 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-265 |
| Cow position: | chr25:36801648-36801906 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 7-267 |
| Cow position: | chr25:34769515-34769255 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-267 |
| Cow position: | chr25:34769683-34769423 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 7-273 |
| Cow position: | chr25:36801564-36801830 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-274 |
| Cow position: | chr25:33305697-33305430 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 95 |
| Conread position: | 7-277 |
| Cow position: | chr25:33157116-33156846 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 39, 43 |
| Conread position: | 8-254 |
| Cow position: | chr25:33298669-33298915 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 210, 205 |
| Conread position: | 8-296 |
| Cow position: | chr25:33145036-33145324 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-223 |
| Cow position: | chr25:346639-346853 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 194, 187 |
| Conread position: | 9-240 |
| Cow position: | chr25:34763269-34763497 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 9-248 |
| Cow position: | chr25:34762936-34763172 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 10-300 |
| Cow position: | chr25:36800739-36801029 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 119 |
| Conread position: | 14-248 |
| Cow position: | chr25:25652383-25652618 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 30-265 |
| Cow position: | chr25:33298775-33299010 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 99 |
| Conread position: | 31-248 |
| Cow position: | chr25:36844575-36844358 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 159, 150 |
| Conread position: | 31-250 |
| Cow position: | chr25:36801012-36801231 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-265 |
| Cow position: | chr25:33299450-33299682 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-248 |
| Cow position: | chr25:34763126-34763340 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 34-293 |
| Cow position: | chr25:34447070-34447329 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 40-247 |
| Cow position: | chr25:25652662-25652869 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 40-248 |
| Cow position: | chr25:34763216-34763424 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-254 |
| Cow position: | chr25:34762883-34763097 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-265 |
| Cow position: | chr25:34769818-34769593 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 173, 177 |
| Conread position: | 45-257 |
| Cow position: | chr25:36801518-36801730 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-265 |
| Cow position: | chr25:36800523-36800742 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-250 |
| Cow position: | chr25:33299381-33299583 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-276 |
| Cow position: | chr25:34447336-34447563 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 49-248 |
| Cow position: | chr25:25652335-25652534 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 49-248 |
| Cow position: | chr25:25652923-25653122 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 49-250 |
| Cow position: | chr25:33157410-33157209 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 154, 148 |
| Conread position: | 49-250 |
| Cow position: | chr25:33305092-33304891 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 49-255 |
| Cow position: | chr25:34473822-34474025 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 49-265 |
| Cow position: | chr25:33298962-33299178 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-267 |
| Cow position: | chr25:22235976-22236194 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-267 |
| Cow position: | chr25:33305961-33305769 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 72-261 |
| Cow position: | chr25:33298565-33298754 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.