Cow genome map
| Conread name: | rthg09_p11.y1 |
| Conread position: | 200-413 |
| Cow position: | chr1:41580336-41580113 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 201-488 |
| Cow position: | chr1:17915700-17915410 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 67 |
| Conread position: | 216-489 |
| Cow position: | chr1:29871707-29871989 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 225-538 |
| Cow position: | chr1:36266259-36266580 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 226-430 |
| Cow position: | chr1:52196381-52196586 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 72, 46 |
| Conread position: | 226-486 |
| Cow position: | chr1:68809879-68810131 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 226-524 |
| Cow position: | chr1:71299259-71298960 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 226-538 |
| Cow position: | chr1:36275424-36275095 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 228-489 |
| Cow position: | chr1:78942832-78943105 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 231-492 |
| Cow position: | chr1:30310737-30310477 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 247-492 |
| Cow position: | chr1:39014266-39014511 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 249-492 |
| Cow position: | chr1:32895357-32895109 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 249-492 |
| Cow position: | chr1:48940080-48940329 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 252-492 |
| Cow position: | chr1:62050457-62050220 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 276-538 |
| Cow position: | chr1:51589939-51590201 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 157 |
| Conread position: | 278-493 |
| Cow position: | chr1:3830793-3830581 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 171 |
| Conread position: | 279-461 |
| Cow position: | chr1:26439857-26440045 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 279-489 |
| Cow position: | chr1:80616507-80616719 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 279-492 |
| Cow position: | chr1:101992527-101992315 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 299-488 |
| Cow position: | chr1:54626543-54626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 299-535 |
| Cow position: | chr1:10996892-10996661 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 21, 117 |
| Conread position: | 319-492 |
| Cow position: | chr1:86999870-87000046 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 342-492 |
| Cow position: | chr1:99303183-99303334 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 353-489 |
| Cow position: | chr1:60436110-60436249 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 353-492 |
| Cow position: | chr1:45857537-45857677 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 366-483 |
| Cow position: | chr1:91880464-91880583 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 366-505 |
| Cow position: | chr1:36664143-36664001 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 371-492 |
| Cow position: | chr1:15999341-15999462 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 372-538 |
| Cow position: | chr1:70263693-70263522 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 394-538 |
| Cow position: | chr1:57640878-57640731 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 138 |
Show alignments to all cow chromosomes.