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Cow genome map

           
Conread name:
           
rthg11_h16.y1
        

               
Conread position:
               
157-614
               

               
Cow position:
               
chr11:35684875-35684422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
164-612
               

               
Cow position:
               
chr11:259556-259095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
129, 81
               

               
Conread position:
               
164-614
               

               
Cow position:
               
chr11:63469514-63469954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 61
               

               
Conread position:
               
168-614
               

               
Cow position:
               
chr11:23138439-23137975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 376
               

               
Conread position:
               
170-486
               

               
Cow position:
               
chr11:58614287-58614616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
170-602
               

               
Cow position:
               
chr11:65409527-65409087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 118
               

               
Conread position:
               
170-614
               

               
Cow position:
               
chr11:34112898-34113344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 96
               

               
Conread position:
               
171-452
               

               
Cow position:
               
chr11:62376801-62376522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
122, 85
               

               
Conread position:
               
171-456
               

               
Cow position:
               
chr11:61137562-61137281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
241, 72
               

               
Conread position:
               
171-484
               

               
Cow position:
               
chr11:19787784-19788085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
246, 78
               

               
Conread position:
               
171-493
               

               
Cow position:
               
chr11:51177145-51177455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
171-521
               

               
Cow position:
               
chr11:77240997-77241356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
171-529
               

               
Cow position:
               
chr11:41577369-41577027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
246, 78
               

               
Conread position:
               
171-541
               

               
Cow position:
               
chr11:4384266-4384625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
241, 48
               

               
Conread position:
               
171-545
               

               
Cow position:
               
chr11:41239636-41239258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
207, 74
               

               
Conread position:
               
171-562
               

               
Cow position:
               
chr11:6154050-6154436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 56
               

               
Conread position:
               
171-591
               

               
Cow position:
               
chr11:76369883-76369467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
78, 89
               

               
Conread position:
               
171-593
               

               
Cow position:
               
chr11:40467486-40467066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
171-595
               

               
Cow position:
               
chr11:10302566-10302143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
171-604
               

               
Cow position:
               
chr11:67746913-67747353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 74
               

               
Conread position:
               
171-605
               

               
Cow position:
               
chr11:4206934-4207381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
74, 91
               

               
Conread position:
               
171-605
               

               
Cow position:
               
chr11:21894514-21894092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 43
               

               
Conread position:
               
171-605
               

               
Cow position:
               
chr11:77745628-77745182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 106
               

               
Conread position:
               
171-611
               

               
Cow position:
               
chr11:13499651-13500091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
171-611
               

               
Cow position:
               
chr11:74316324-74316785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
171-611
               

               
Cow position:
               
chr11:77759121-77758685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
184, 71
               

               
Conread position:
               
171-612
               

               
Cow position:
               
chr11:25792057-25791618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
91, 102
               

               
Conread position:
               
171-613
               

               
Cow position:
               
chr11:44637125-44636676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:3769651-3769231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
190, 73
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:8525467-8525036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 44
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:15285983-15285536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:27248128-27248569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:29947301-29946835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 95
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:43361154-43360705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:43430822-43430378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 71
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:43897771-43898217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:44031635-44032090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 72
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:49152576-49153027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:50153181-50152735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 52
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:62225615-62226065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 192
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:67246445-67246864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 32
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:67600383-67600863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
77, 424
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:68207212-68206763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 94
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:69118935-69119372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 77
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:76114288-76114721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 74
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:80820363-80819926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 44
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr11:80923700-80923245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 77
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr11:64932661-64932330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
82, 73
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr11:48932975-48932609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
73, 344
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr11:30191800-30192257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 73
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr11:35874337-35873924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr11:59872563-59873007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr11:62151243-62150815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
173-416
               

               
Cow position:
               
chr11:11594776-11595024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
173-436
               

               
Cow position:
               
chr11:16795510-16795254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
173-580
               

               
Cow position:
               
chr11:15503739-15504157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
194, 99
               

               
Conread position:
               
173-593
               

               
Cow position:
               
chr11:39115136-39115551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 50
               

               
Conread position:
               
173-602
               

               
Cow position:
               
chr11:61454897-61454450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
173-605
               

               
Cow position:
               
chr11:46746270-46746703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 46
               

               
Conread position:
               
173-611
               

               
Cow position:
               
chr11:38235875-38236327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 123
               

               
Conread position:
               
173-611
               

               
Cow position:
               
chr11:70484225-70483776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
173-613
               

               
Cow position:
               
chr11:59702122-59702568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr11:40819-41258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 46
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr11:3833710-3833285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 71
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr11:8428121-8428590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 357
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr11:25386708-25387147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr11:52297582-52297142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr11:73512782-73512364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 72
               

               
Conread position:
               
175-595
               

               
Cow position:
               
chr11:33754279-33753849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 201
               

               
Conread position:
               
175-612
               

               
Cow position:
               
chr11:44233997-44234432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
175-614
               

               
Cow position:
               
chr11:63847493-63847925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 17
               

               
Conread position:
               
176-456
               

               
Cow position:
               
chr11:84891103-84890832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
177-579
               

               
Cow position:
               
chr11:66897158-66896754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
178-611
               

               
Cow position:
               
chr11:81162812-81162357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 225
               

               
Conread position:
               
180-594
               

               
Cow position:
               
chr11:75480390-75479965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
180-614
               

               
Cow position:
               
chr11:64090441-64090018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
181-460
               

               
Cow position:
               
chr11:82232069-82232337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
208, 64
               

               
Conread position:
               
185-524
               

               
Cow position:
               
chr11:81614979-81614651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
111, 64
               

               
Conread position:
               
187-614
               

               
Cow position:
               
chr11:48271847-48272279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 85
               

               
Conread position:
               
193-552
               

               
Cow position:
               
chr11:955022-955385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 80
               

               
Conread position:
               
200-584
               

               
Cow position:
               
chr11:4435985-4436368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 66
               

               
Conread position:
               
202-557
               

               
Cow position:
               
chr11:86926255-86925918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
203-498
               

               
Cow position:
               
chr11:27462744-27462429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
42, 187
               

               
Conread position:
               
210-612
               

               
Cow position:
               
chr11:36986636-36987026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
210-614
               

               
Cow position:
               
chr11:7415187-7414797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
216-614
               

               
Cow position:
               
chr11:30934100-30934495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
219-538
               

               
Cow position:
               
chr11:9837417-9837095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
195, 45
               

               
Conread position:
               
226-614
               

               
Cow position:
               
chr11:7589871-7590267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 275
               

               
Conread position:
               
234-613
               

               
Cow position:
               
chr11:45898370-45897972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
234-614
               

               
Cow position:
               
chr11:49935059-49934652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
241-515
               

               
Cow position:
               
chr11:43913923-43914195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
248-460
               

               
Cow position:
               
chr11:39808693-39808912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
248-614
               

               
Cow position:
               
chr11:20761542-20761921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 265
               

               
Conread position:
               
249-614
               

               
Cow position:
               
chr11:49148747-49149128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
251-602
               

               
Cow position:
               
chr11:34032489-34032136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
159, 22
               

               
Conread position:
               
252-533
               

               
Cow position:
               
chr11:6400368-6400071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 252
               

               
Conread position:
               
253-494
               

               
Cow position:
               
chr11:57111604-57111345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
256-484
               

               
Cow position:
               
chr11:25165150-25165392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 233
               

               
Conread position:
               
277-614
               

               
Cow position:
               
chr11:2917845-2917508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 19
               

               
Conread position:
               
282-456
               

               
Cow position:
               
chr11:38193888-38194072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
282-535
               

               
Cow position:
               
chr11:1485624-1485358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 193
               

               
Conread position:
               
282-548
               

               
Cow position:
               
chr11:18244205-18243927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 221
               

               
Conread position:
               
282-610
               

               
Cow position:
               
chr11:24937399-24937740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 291
               

               
Conread position:
               
282-611
               

               
Cow position:
               
chr11:62155367-62155714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
282-612
               

               
Cow position:
               
chr11:47544864-47545208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 286
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr11:1362744-1362389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
14, 299
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr11:18698611-18698958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
14, 220
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr11:21844396-21844060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr11:63482689-63482352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 212
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr11:68910111-68909777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 103
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr11:80530107-80530437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr11:81137958-81138288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
283-480
               

               
Cow position:
               
chr11:85764689-85764885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
283-486
               

               
Cow position:
               
chr11:2281549-2281341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
283-521
               

               
Cow position:
               
chr11:171959-171716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
289-613
               

               
Cow position:
               
chr11:2907779-2907451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
291-612
               

               
Cow position:
               
chr11:77319171-77319491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
126, 68
               

               
Conread position:
               
291-614
               

               
Cow position:
               
chr11:18707066-18706746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
89, 100
               

               
Conread position:
               
291-614
               

               
Cow position:
               
chr11:30639201-30638871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 185
               

               
Conread position:
               
292-456
               

               
Cow position:
               
chr11:48232491-48232651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
292-481
               

               
Cow position:
               
chr11:17192533-17192334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
292-504
               

               
Cow position:
               
chr11:36647109-36647329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 177
               

               
Conread position:
               
292-524
               

               
Cow position:
               
chr11:8105531-8105774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
292-584
               

               
Cow position:
               
chr11:3726034-3726337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
80, 270
               

               
Conread position:
               
292-592
               

               
Cow position:
               
chr11:34120947-34121254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
292-594
               

               
Cow position:
               
chr11:85723450-85723756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
74, 85
               

               
Conread position:
               
292-599
               

               
Cow position:
               
chr11:52381122-52380808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
75, 91
               

               
Conread position:
               
292-602
               

               
Cow position:
               
chr11:19247446-19247133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 195
               

               
Conread position:
               
292-602
               

               
Cow position:
               
chr11:79728925-79728601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
69, 197
               

               
Conread position:
               
292-604
               

               
Cow position:
               
chr11:45872570-45872242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
75, 235
               

               
Conread position:
               
292-611
               

               
Cow position:
               
chr11:87155264-87155595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
292-612
               

               
Cow position:
               
chr11:33341397-33341068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
292-613
               

               
Cow position:
               
chr11:30475747-30476076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 179
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:377900-377563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 222
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:3233829-3234154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 168
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:8988481-8988152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 207
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:11232705-11232377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:17083549-17083231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:20238421-20238755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 274
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:24601718-24602049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 183
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:28643830-28644166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:34830031-34829707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:39499125-39499435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 76
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:56654296-56654634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:70609536-70609876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
75, 206
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:73354305-73353981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
75, 200
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:83043612-83043284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 212
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr11:83066244-83066566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
293-611
               

               
Cow position:
               
chr11:66188572-66188241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
22, 135
               

               
Conread position:
               
293-612
               

               
Cow position:
               
chr11:8828879-8828557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 154
               

               
Conread position:
               
293-614
               

               
Cow position:
               
chr11:36112166-36112498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 213
               

               
Conread position:
               
294-613
               

               
Cow position:
               
chr11:11125414-11125741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 196
               

               
Conread position:
               
298-614
               

               
Cow position:
               
chr11:36659059-36658744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 67
               

               
Conread position:
               
300-505
               

               
Cow position:
               
chr11:41438468-41438247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
301-614
               

               
Cow position:
               
chr11:82940860-82940546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
302-614
               

               
Cow position:
               
chr11:26144326-26144018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
110, 53
               

               
Conread position:
               
303-524
               

               
Cow position:
               
chr11:57769591-57769374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
304-613
               

               
Cow position:
               
chr11:62239510-62239822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
309-614
               

               
Cow position:
               
chr11:11469868-11469569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 92
               

               
Conread position:
               
313-458
               

               
Cow position:
               
chr11:6329015-6329169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
313-614
               

               
Cow position:
               
chr11:42044221-42043918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 217
               

               
Conread position:
               
315-557
               

               
Cow position:
               
chr11:18591662-18591411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
315-598
               

               
Cow position:
               
chr11:38874630-38874339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
315-614
               

               
Cow position:
               
chr11:66425119-66424801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 232
               

               
Conread position:
               
317-614
               

               
Cow position:
               
chr11:29960078-29960374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
320-600
               

               
Cow position:
               
chr11:67550587-67550313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
321-605
               

               
Cow position:
               
chr11:23586413-23586708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
324-611
               

               
Cow position:
               
chr11:15772942-15772638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
33, 212
               

               
Conread position:
               
326-613
               

               
Cow position:
               
chr11:65762814-65762513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 248
               

               
Conread position:
               
327-612
               

               
Cow position:
               
chr11:52983474-52983752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
132, 42
               

               
Conread position:
               
336-613
               

               
Cow position:
               
chr11:71493068-71492784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 162
               

               
Conread position:
               
339-591
               

               
Cow position:
               
chr11:9463624-9463891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 165
               

               
Conread position:
               
342-611
               

               
Cow position:
               
chr11:68912941-68913216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 153
               

               
Conread position:
               
343-614
               

               
Cow position:
               
chr11:63909853-63909588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
348-614
               

               
Cow position:
               
chr11:34646402-34646668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
64, 6
               

               
Conread position:
               
361-602
               

               
Cow position:
               
chr11:70086143-70086399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 210
               

               
Conread position:
               
362-605
               

               
Cow position:
               
chr11:61958925-61958674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 197
               

               
Conread position:
               
363-601
               

               
Cow position:
               
chr11:38670505-38670748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 142
               

               
Conread position:
               
363-614
               

               
Cow position:
               
chr11:9270905-9270648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 135
               

               
Conread position:
               
363-614
               

               
Cow position:
               
chr11:26845758-26845515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
363-614
               

               
Cow position:
               
chr11:30954821-30955079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
363-614
               

               
Cow position:
               
chr11:40573511-40573257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
365-610
               

               
Cow position:
               
chr11:30830791-30830539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 200
               

               
Conread position:
               
369-614
               

               
Cow position:
               
chr11:16907214-16906972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
45, 119
               

               
Conread position:
               
369-614
               

               
Cow position:
               
chr11:21438044-21438287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 120
               

               
Conread position:
               
371-613
               

               
Cow position:
               
chr11:75874921-75874677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
372-614
               

               
Cow position:
               
chr11:55494514-55494758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
373-612
               

               
Cow position:
               
chr11:40479022-40478776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
375-614
               

               
Cow position:
               
chr11:48295867-48296109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
42, 124
               

               
Conread position:
               
377-538
               

               
Cow position:
               
chr11:63499487-63499322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
378-605
               

               
Cow position:
               
chr11:17493316-17493553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
378-614
               

               
Cow position:
               
chr11:42296780-42296541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
383-614
               

               
Cow position:
               
chr11:13075948-13075733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
383-614
               

               
Cow position:
               
chr11:51729131-51729365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
386-614
               

               
Cow position:
               
chr11:35213315-35213089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
386-614
               

               
Cow position:
               
chr11:63435363-63435599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
388-614
               

               
Cow position:
               
chr11:69075756-69075989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 177
               

               
Conread position:
               
394-559
               

               
Cow position:
               
chr11:33825037-33824863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
394-613
               

               
Cow position:
               
chr11:23407315-23407542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 175
               

               
Conread position:
               
405-614
               

               
Cow position:
               
chr11:62788993-62789209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
12, 162
               

               
Conread position:
               
405-614
               

               
Cow position:
               
chr11:69977844-69978049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
413-593
               

               
Cow position:
               
chr11:261388-261210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
413-612
               

               
Cow position:
               
chr11:49873013-49872811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 148
               

               
Conread position:
               
413-613
               

               
Cow position:
               
chr11:65767072-65767277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
53, 152
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr11:40608722-40608516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 152
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr11:41293944-41293739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr11:47772517-47772311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr11:83032558-83032759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
414-614
               

               
Cow position:
               
chr11:6194081-6194284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
428-614
               

               
Cow position:
               
chr11:67615357-67615168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
441-614
               

               
Cow position:
               
chr11:64406128-64406307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
447-614
               

               
Cow position:
               
chr11:35803048-35803215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
448-614
               

               
Cow position:
               
chr11:62813036-62812871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
470-614
               

               
Cow position:
               
chr11:25119997-25119853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 90
               
Show alignments to all cow chromosomes.