Cow genome map

Conread name: rthg11_h16.y1

Conread position: 162-612
Cow position:
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 87

Conread position: 164-536
Cow position:
Alignm length: 391
Alignm identity: 277
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 85, 31

Conread position: 168-552
Cow position:
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 77

Conread position: 168-598
Cow position:
Alignm length: 454
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 75

Conread position: 168-614
Cow position:
Alignm length: 454
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 80

Conread position: 170-614
Cow position:
Alignm length: 465
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 46

Conread position: 171-456
Cow position:
Alignm length: 290
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 118

Conread position: 171-460
Cow position:
Alignm length: 297
Alignm identity: 209
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 53

Conread position: 171-460
Cow position:
Alignm length: 295
Alignm identity: 197
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 188, 78

Conread position: 171-479
Cow position:
Alignm length: 317
Alignm identity: 226
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 204, 74

Conread position: 171-521
Cow position:
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 75

Conread position: 171-524
Cow position:
Alignm length: 366
Alignm identity: 247
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 125, 74

Conread position: 171-524
Cow position:
Alignm length: 360
Alignm identity: 243
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 241, 74

Conread position: 171-525
Cow position:
Alignm length: 369
Alignm identity: 247
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 196, 74

Conread position: 171-538
Cow position:
Alignm length: 379
Alignm identity: 270
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 105, 71

Conread position: 171-559
Cow position:
Alignm length: 405
Alignm identity: 272
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 91, 80

Conread position: 171-587
Cow position:
Alignm length: 438
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 22

Conread position: 171-593
Cow position:
Alignm length: 432
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 78

Conread position: 171-602
Cow position:
Alignm length: 441
Alignm identity: 294
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 125, 19

Conread position: 171-605
Cow position:
Alignm length: 446
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 44

Conread position: 171-612
Cow position:
Alignm length: 456
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 69

Conread position: 171-612
Cow position:
Alignm length: 445
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 27

Conread position: 171-612
Cow position:
Alignm length: 452
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 109

Conread position: 171-614
Cow position:
Alignm length: 459
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 74

Conread position: 171-614
Cow position:
Alignm length: 463
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 72

Conread position: 171-614
Cow position:
Alignm length: 454
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 71

Conread position: 171-614
Cow position:
Alignm length: 457
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 68

Conread position: 171-614
Cow position:
Alignm length: 462
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 69

Conread position: 171-614
Cow position:
Alignm length: 459
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 74

Conread position: 171-614
Cow position:
Alignm length: 465
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 94

Conread position: 172-524
Cow position:
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 77

Conread position: 172-533
Cow position:
Alignm length: 380
Alignm identity: 251
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 94, 289

Conread position: 172-611
Cow position:
Alignm length: 451
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 41

Conread position: 172-614
Cow position:
Alignm length: 455
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 13

Conread position: 173-460
Cow position:
Alignm length: 311
Alignm identity: 218
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 83, 178

Conread position: 173-596
Cow position:
Alignm length: 435
Alignm identity: 290
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 207, 57

Conread position: 173-614
Cow position:
Alignm length: 458
Alignm identity: 313
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 198, 42

Conread position: 174-557
Cow position:
Alignm length: 393
Alignm identity: 274
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 232, 75

Conread position: 175-480
Cow position:
Alignm length: 316
Alignm identity: 230
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 233, 70

Conread position: 175-605
Cow position:
Alignm length: 448
Alignm identity: 298
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 206, 47

Conread position: 175-612
Cow position:
Alignm length: 461
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 192

Conread position: 176-452
Cow position:
Alignm length: 288
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 204, 69

Conread position: 177-613
Cow position:
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 188

Conread position: 178-512
Cow position:
Alignm length: 343
Alignm identity: 225
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 94

Conread position: 178-524
Cow position:
Alignm length: 366
Alignm identity: 253
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 158, 67

Conread position: 178-540
Cow position:
Alignm length: 373
Alignm identity: 256
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 183, 16

Conread position: 184-566
Cow position:
Alignm length: 398
Alignm identity: 266
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 173, 53

Conread position: 185-500
Cow position:
Alignm length: 329
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 186, 76

Conread position: 194-614
Cow position:
Alignm length: 435
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 51

Conread position: 224-456
Cow position:
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 49

Conread position: 233-614
Cow position:
Alignm length: 389
Alignm identity: 273
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 20

Conread position: 234-610
Cow position:
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 6

Conread position: 241-614
Cow position:
Alignm length: 386
Alignm identity: 260
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 115, 29

Conread position: 248-415
Cow position:
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 119, 40

Conread position: 248-602
Cow position:
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 25

Conread position: 248-614
Cow position:
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 253-594
Cow position:
Alignm length: 358
Alignm identity: 241
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 22

Conread position: 253-596
Cow position:
Alignm length: 355
Alignm identity: 243
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 40

Conread position: 256-614
Cow position:
Alignm length: 382
Alignm identity: 265
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 157, 82

Conread position: 282-584
Cow position:
Alignm length: 319
Alignm identity: 213
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 203

Conread position: 282-593
Cow position:
Alignm length: 328
Alignm identity: 216
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 193

Conread position: 282-593
Cow position:
Alignm length: 320
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 14, 90

Conread position: 282-595
Cow position:
Alignm length: 326
Alignm identity: 219
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 136

Conread position: 282-612
Cow position:
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 10

Conread position: 282-614
Cow position:
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 58

Conread position: 282-614
Cow position:
Alignm length: 341
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 14

Conread position: 282-614
Cow position:
Alignm length: 338
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 75

Conread position: 282-614
Cow position:
Alignm length: 348
Alignm identity: 247
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 15, 47

Conread position: 283-484
Cow position:
Alignm length: 212
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 37

Conread position: 292-472
Cow position:
Alignm length: 195
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 292-480
Cow position:
Alignm length: 204
Alignm identity: 160
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 0

Conread position: 292-491
Cow position:
Alignm length: 211
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 164

Conread position: 292-522
Cow position:
Alignm length: 243
Alignm identity: 180
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 7

Conread position: 292-531
Cow position:
Alignm length: 257
Alignm identity: 181
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 24

Conread position: 292-538
Cow position:
Alignm length: 260
Alignm identity: 181
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 88, 59

Conread position: 292-555
Cow position:
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 193

Conread position: 292-586
Cow position:
Alignm length: 304
Alignm identity: 198
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 240

Conread position: 292-605
Cow position:
Alignm length: 328
Alignm identity: 225
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 75, 94

Conread position: 292-605
Cow position:
Alignm length: 334
Alignm identity: 224
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 116

Conread position: 292-605
Cow position:
Alignm length: 339
Alignm identity: 234
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 119, 76

Conread position: 292-611
Cow position:
Alignm length: 332
Alignm identity: 235
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 88, 57

Conread position: 292-614
Cow position:
Alignm length: 332
Alignm identity: 232
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 76, 49

Conread position: 292-614
Cow position:
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 103

Conread position: 292-614
Cow position:
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 272

Conread position: 292-614
Cow position:
Alignm length: 329
Alignm identity: 236
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 165, 76

Conread position: 292-614
Cow position:
Alignm length: 333
Alignm identity: 219
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 34, 59

Conread position: 292-614
Cow position:
Alignm length: 337
Alignm identity: 233
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 69, 282

Conread position: 293-598
Cow position:
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 58

Conread position: 294-484
Cow position:
Alignm length: 199
Alignm identity: 151
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 118, 45

Conread position: 294-605
Cow position:
Alignm length: 323
Alignm identity: 227
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 73, 199

Conread position: 294-614
Cow position:
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 269

Conread position: 295-614
Cow position:
Alignm length: 333
Alignm identity: 232
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 76, 116

Conread position: 296-614
Cow position:
Alignm length: 324
Alignm identity: 231
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 168

Conread position: 300-515
Cow position:
Alignm length: 225
Alignm identity: 159
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 71, 52

Conread position: 300-614
Cow position:
Alignm length: 329
Alignm identity: 229
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 13, 58

Conread position: 301-614
Cow position:
Alignm length: 327
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 277

Conread position: 303-459
Cow position:
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 15

Conread position: 304-611
Cow position:
Alignm length: 323
Alignm identity: 231
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 65, 154

Conread position: 305-614
Cow position:
Alignm length: 321
Alignm identity: 223
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 73, 16

Conread position: 310-614
Cow position:
Alignm length: 320
Alignm identity: 216
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 14, 186

Conread position: 310-614
Cow position:
Alignm length: 324
Alignm identity: 220
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 197

Conread position: 310-614
Cow position:
Alignm length: 315
Alignm identity: 216
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 70, 41

Conread position: 313-602
Cow position:
Alignm length: 312
Alignm identity: 210
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 234

Conread position: 317-613
Cow position:
Alignm length: 310
Alignm identity: 215
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 63, 97

Conread position: 321-538
Cow position:
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 46

Conread position: 325-614
Cow position:
Alignm length: 302
Alignm identity: 206
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 146

Conread position: 327-614
Cow position:
Alignm length: 299
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 244

Conread position: 329-595
Cow position:
Alignm length: 281
Alignm identity: 189
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 106

Conread position: 331-593
Cow position:
Alignm length: 277
Alignm identity: 186
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 156

Conread position: 333-614
Cow position:
Alignm length: 294
Alignm identity: 201
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 66

Conread position: 342-596
Cow position:
Alignm length: 258
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 70, 113

Conread position: 355-597
Cow position:
Alignm length: 252
Alignm identity: 176
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 15, 208

Conread position: 355-614
Cow position:
Alignm length: 266
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 118

Conread position: 360-595
Cow position:
Alignm length: 237
Alignm identity: 171
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 167, 18

Conread position: 363-605
Cow position:
Alignm length: 257
Alignm identity: 179
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 364-614
Cow position:
Alignm length: 263
Alignm identity: 190
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 365-534
Cow position:
Alignm length: 178
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 368-612
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 126

Conread position: 370-614
Cow position:
Alignm length: 253
Alignm identity: 175
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 374-613
Cow position:
Alignm length: 248
Alignm identity: 172
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 38, 114

Conread position: 378-592
Cow position:
Alignm length: 224
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 34, 12

Conread position: 383-601
Cow position:
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 112

Conread position: 413-614
Cow position:
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 93

Conread position: 414-613
Cow position:
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 113, 54

Conread position: 442-614
Cow position:
Alignm length: 178
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 112

Conread position: 458-601
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 102

Conread position: 458-614
Cow position:
Alignm length: 158
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 34

Show alignments to all cow chromosomes.