Cow genome map

Conread name: rthg11_h16.y1

Conread position: 164-614
Cow position:
Alignm length: 461
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 39

Conread position: 164-614
Cow position:
Alignm length: 462
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 81

Conread position: 168-480
Cow position:
Alignm length: 321
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 47

Conread position: 170-614
Cow position:
Alignm length: 450
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 75

Conread position: 171-452
Cow position:
Alignm length: 305
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 83, 207

Conread position: 171-456
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 241, 89

Conread position: 171-480
Cow position:
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 78

Conread position: 171-492
Cow position:
Alignm length: 337
Alignm identity: 225
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 22, 76

Conread position: 171-494
Cow position:
Alignm length: 329
Alignm identity: 216
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 61, 57

Conread position: 171-529
Cow position:
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 85

Conread position: 171-533
Cow position:
Alignm length: 374
Alignm identity: 236
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 195, 61

Conread position: 171-538
Cow position:
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 23

Conread position: 171-541
Cow position:
Alignm length: 382
Alignm identity: 264
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 241, 74

Conread position: 171-548
Cow position:
Alignm length: 385
Alignm identity: 263
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 95, 193

Conread position: 171-550
Cow position:
Alignm length: 396
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 171-552
Cow position:
Alignm length: 398
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 95

Conread position: 171-575
Cow position:
Alignm length: 419
Alignm identity: 278
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 196, 78

Conread position: 171-577
Cow position:
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 69

Conread position: 171-591
Cow position:
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 28

Conread position: 171-593
Cow position:
Alignm length: 446
Alignm identity: 306
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 125, 40

Conread position: 171-595
Cow position:
Alignm length: 428
Alignm identity: 288
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 257, 40

Conread position: 171-598
Cow position:
Alignm length: 437
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 74

Conread position: 171-599
Cow position:
Alignm length: 452
Alignm identity: 294
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 85, 338

Conread position: 171-602
Cow position:
Alignm length: 441
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 80

Conread position: 171-602
Cow position:
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 52

Conread position: 171-602
Cow position:
Alignm length: 446
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 74

Conread position: 171-605
Cow position:
Alignm length: 444
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 74

Conread position: 171-610
Cow position:
Alignm length: 458
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 74

Conread position: 171-613
Cow position:
Alignm length: 455
Alignm identity: 311
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 89, 52

Conread position: 171-614
Cow position:
Alignm length: 453
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 74

Conread position: 171-614
Cow position:
Alignm length: 453
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 71

Conread position: 171-614
Cow position:
Alignm length: 458
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 22

Conread position: 171-614
Cow position:
Alignm length: 464
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 74

Conread position: 171-614
Cow position:
Alignm length: 464
Alignm identity: 314
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 69

Conread position: 171-614
Cow position:
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 72

Conread position: 172-573
Cow position:
Alignm length: 420
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 35

Conread position: 173-460
Cow position:
Alignm length: 296
Alignm identity: 206
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 194, 78

Conread position: 173-473
Cow position:
Alignm length: 312
Alignm identity: 225
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 69, 128

Conread position: 173-521
Cow position:
Alignm length: 356
Alignm identity: 248
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 194, 72

Conread position: 173-524
Cow position:
Alignm length: 360
Alignm identity: 245
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 123, 28

Conread position: 173-528
Cow position:
Alignm length: 369
Alignm identity: 254
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 177, 80

Conread position: 173-611
Cow position:
Alignm length: 446
Alignm identity: 298
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 282, 72

Conread position: 173-614
Cow position:
Alignm length: 457
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 34

Conread position: 174-611
Cow position:
Alignm length: 464
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 290

Conread position: 175-598
Cow position:
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 69

Conread position: 175-612
Cow position:
Alignm length: 445
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 74

Conread position: 175-612
Cow position:
Alignm length: 453
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 69

Conread position: 176-460
Cow position:
Alignm length: 294
Alignm identity: 208
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 187, 69

Conread position: 177-614
Cow position:
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 68

Conread position: 179-515
Cow position:
Alignm length: 347
Alignm identity: 246
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 199, 45

Conread position: 183-552
Cow position:
Alignm length: 395
Alignm identity: 272
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 174, 66

Conread position: 189-479
Cow position:
Alignm length: 297
Alignm identity: 212
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 108, 62

Conread position: 193-614
Cow position:
Alignm length: 444
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 215

Conread position: 195-591
Cow position:
Alignm length: 409
Alignm identity: 276
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 174, 56

Conread position: 201-612
Cow position:
Alignm length: 429
Alignm identity: 302
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 170, 55

Conread position: 204-614
Cow position:
Alignm length: 418
Alignm identity: 291
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 157, 41

Conread position: 205-591
Cow position:
Alignm length: 405
Alignm identity: 277
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 56, 16

Conread position: 218-612
Cow position:
Alignm length: 422
Alignm identity: 283
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 48, 39

Conread position: 227-605
Cow position:
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 48

Conread position: 234-530
Cow position:
Alignm length: 318
Alignm identity: 217
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 8, 38

Conread position: 240-574
Cow position:
Alignm length: 346
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 21

Conread position: 243-614
Cow position:
Alignm length: 395
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 6

Conread position: 248-605
Cow position:
Alignm length: 373
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 82

Conread position: 248-611
Cow position:
Alignm length: 397
Alignm identity: 282
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 6, 263

Conread position: 265-614
Cow position:
Alignm length: 369
Alignm identity: 256
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 39, 10

Conread position: 275-456
Cow position:
Alignm length: 191
Alignm identity: 152
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 15, 7

Conread position: 282-450
Cow position:
Alignm length: 178
Alignm identity: 137
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 282-555
Cow position:
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 150

Conread position: 282-605
Cow position:
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 189

Conread position: 282-613
Cow position:
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 275

Conread position: 282-614
Cow position:
Alignm length: 339
Alignm identity: 243
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 15, 181

Conread position: 282-614
Cow position:
Alignm length: 359
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 301

Conread position: 282-614
Cow position:
Alignm length: 344
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 33

Conread position: 282-614
Cow position:
Alignm length: 348
Alignm identity: 237
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 12, 67

Conread position: 285-614
Cow position:
Alignm length: 340
Alignm identity: 235
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 98, 137

Conread position: 286-614
Cow position:
Alignm length: 343
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 287

Conread position: 289-612
Cow position:
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 72

Conread position: 292-452
Cow position:
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 292-458
Cow position:
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 29

Conread position: 292-460
Cow position:
Alignm length: 174
Alignm identity: 137
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 78, 0

Conread position: 292-493
Cow position:
Alignm length: 212
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 122, 69

Conread position: 292-506
Cow position:
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 140

Conread position: 292-580
Cow position:
Alignm length: 300
Alignm identity: 212
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 75, 261

Conread position: 292-587
Cow position:
Alignm length: 301
Alignm identity: 212
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 86

Conread position: 292-611
Cow position:
Alignm length: 328
Alignm identity: 227
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 120, 75

Conread position: 292-611
Cow position:
Alignm length: 329
Alignm identity: 228
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 120, 43

Conread position: 292-611
Cow position:
Alignm length: 334
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 272

Conread position: 292-613
Cow position:
Alignm length: 337
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 108

Conread position: 292-613
Cow position:
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 178

Conread position: 292-614
Cow position:
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 111

Conread position: 292-614
Cow position:
Alignm length: 337
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 75, 287

Conread position: 292-614
Cow position:
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 156

Conread position: 292-614
Cow position:
Alignm length: 339
Alignm identity: 238
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 12, 206

Conread position: 292-614
Cow position:
Alignm length: 336
Alignm identity: 238
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 59, 18

Conread position: 292-614
Cow position:
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 152

Conread position: 292-614
Cow position:
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 20

Conread position: 292-614
Cow position:
Alignm length: 328
Alignm identity: 224
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 74

Conread position: 292-614
Cow position:
Alignm length: 329
Alignm identity: 229
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 75, 93

Conread position: 292-614
Cow position:
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 179

Conread position: 293-456
Cow position:
Alignm length: 173
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 294-610
Cow position:
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 285

Conread position: 299-605
Cow position:
Alignm length: 326
Alignm identity: 236
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 15, 233

Conread position: 300-525
Cow position:
Alignm length: 232
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 118

Conread position: 307-614
Cow position:
Alignm length: 327
Alignm identity: 226
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 61, 100

Conread position: 309-614
Cow position:
Alignm length: 320
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 185

Conread position: 309-614
Cow position:
Alignm length: 323
Alignm identity: 218
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 9, 265

Conread position: 312-614
Cow position:
Alignm length: 316
Alignm identity: 214
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 59, 23

Conread position: 313-521
Cow position:
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 67

Conread position: 313-614
Cow position:
Alignm length: 307
Alignm identity: 209
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 47, 74

Conread position: 315-612
Cow position:
Alignm length: 322
Alignm identity: 212
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 255

Conread position: 316-614
Cow position:
Alignm length: 309
Alignm identity: 224
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 18

Conread position: 322-515
Cow position:
Alignm length: 200
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 92, 45

Conread position: 322-614
Cow position:
Alignm length: 308
Alignm identity: 210
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 45, 239

Conread position: 324-612
Cow position:
Alignm length: 297
Alignm identity: 215
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 88, 37

Conread position: 325-605
Cow position:
Alignm length: 299
Alignm identity: 218
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 36, 179

Conread position: 326-602
Cow position:
Alignm length: 286
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 168

Conread position: 326-614
Cow position:
Alignm length: 297
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 86, 35

Conread position: 327-602
Cow position:
Alignm length: 297
Alignm identity: 203
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 33, 244

Conread position: 340-598
Cow position:
Alignm length: 267
Alignm identity: 182
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 10, 72

Conread position: 341-614
Cow position:
Alignm length: 285
Alignm identity: 204
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 8

Conread position: 348-605
Cow position:
Alignm length: 269
Alignm identity: 192
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 5, 67

Conread position: 363-611
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 49, 121

Conread position: 363-614
Cow position:
Alignm length: 259
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 101, 36

Conread position: 364-614
Cow position:
Alignm length: 260
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 23

Conread position: 365-594
Cow position:
Alignm length: 235
Alignm identity: 159
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 127

Conread position: 367-602
Cow position:
Alignm length: 246
Alignm identity: 171
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 32

Conread position: 370-611
Cow position:
Alignm length: 253
Alignm identity: 179
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 42, 186

Conread position: 371-614
Cow position:
Alignm length: 252
Alignm identity: 178
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 41, 186

Conread position: 374-614
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 120

Conread position: 378-614
Cow position:
Alignm length: 247
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 182

Conread position: 378-614
Cow position:
Alignm length: 246
Alignm identity: 170
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 34, 190

Conread position: 384-614
Cow position:
Alignm length: 235
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 72

Conread position: 386-612
Cow position:
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 116

Conread position: 396-614
Cow position:
Alignm length: 224
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 34

Conread position: 402-614
Cow position:
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 163

Conread position: 405-614
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 53, 7

Conread position: 408-610
Cow position:
Alignm length: 208
Alignm identity: 147
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 56, 27

Conread position: 417-614
Cow position:
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 9

Conread position: 421-614
Cow position:
Alignm length: 204
Alignm identity: 142
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 36, 148

Conread position: 436-612
Cow position:
Alignm length: 177
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 448-613
Cow position:
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 29

Conread position: 469-614
Cow position:
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 19

Show alignments to all cow chromosomes.