Cow genome map

Conread name: rthg11_h16.y1

Conread position: 146-530
Cow position: chr26:27064026-27063642 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 260
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 101

Conread position: 171-509
Cow position: chr26:12155434-12155106 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 243, 19

Conread position: 171-511
Cow position: chr26:12807844-12807504 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 25, 75

Conread position: 171-594
Cow position: chr26:16783483-16783919 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 162

Conread position: 171-602
Cow position: chr26:32776835-32776411 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 306
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 244, 73

Conread position: 171-606
Cow position: chr26:32670823-32670391 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 85

Conread position: 171-612
Cow position: chr26:8700379-8699936 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 74

Conread position: 171-612
Cow position: chr26:34108441-34108869 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 77

Conread position: 171-614
Cow position: chr26:614019-613560 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 317
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 78, 215

Conread position: 171-614
Cow position: chr26:6475755-6475316 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 68

Conread position: 171-614
Cow position: chr26:6714612-6714189 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 74

Conread position: 171-614
Cow position: chr26:11263315-11263751 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 25

Conread position: 171-614
Cow position: chr26:12145432-12145005 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 77

Conread position: 171-614
Cow position: chr26:20292011-20291579 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 73

Conread position: 171-614
Cow position: chr26:23600121-23599687 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 45

Conread position: 171-614
Cow position: chr26:33112709-33112272 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 303
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 200, 63

Conread position: 172-538
Cow position: chr26:2531502-2531144 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 252
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 48, 52

Conread position: 172-605
Cow position: chr26:32682786-32683220 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 305
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 124, 73

Conread position: 173-551
Cow position: chr26:6030087-6029722 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 239, 71

Conread position: 174-611
Cow position: chr26:14951477-14951033 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 291
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 94, 21

Conread position: 175-566
Cow position: chr26:9867453-9867061 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 91

Conread position: 176-483
Cow position: chr26:28442334-28442026 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 78, 95

Conread position: 177-611
Cow position: chr26:3072285-3071867 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 300
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 119, 59

Conread position: 178-404
Cow position: chr26:34169546-34169315 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 105

Conread position: 187-451
Cow position: chr26:31701502-31701769 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 180, 62

Conread position: 207-614
Cow position: chr26:18825566-18825170 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 278
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 69, 44

Conread position: 209-601
Cow position: chr26:4363014-4363400 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 254
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 210, 36

Conread position: 223-458
Cow position: chr26:6188019-6188248 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 52

Conread position: 223-614
Cow position: chr26:27491779-27491388 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 22

Conread position: 224-613
Cow position: chr26:11134972-11134579 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 285
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 156, 21

Conread position: 235-612
Cow position: chr26:9104565-9104170 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 14, 147

Conread position: 245-614
Cow position: chr26:26466978-26466619 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 248-538
Cow position: chr26:32866149-32865854 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 198
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 63

Conread position: 248-591
Cow position: chr26:32898127-32897779 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 40

Conread position: 282-595
Cow position: chr26:6793912-6794239 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 232
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 222

Conread position: 282-614
Cow position: chr26:19774531-19774186 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 291

Conread position: 282-614
Cow position: chr26:34314449-34314803 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 240
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 216

Conread position: 285-612
Cow position: chr26:15200741-15200405 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 11, 71

Conread position: 287-515
Cow position: chr26:21351465-21351704 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 7, 62

Conread position: 288-612
Cow position: chr26:5246708-5246367 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 79, 119

Conread position: 290-586
Cow position: chr26:33857416-33857108 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 209

Conread position: 292-457
Cow position: chr26:5988937-5988773 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 135
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 123, 85

Conread position: 292-458
Cow position: chr26:9850309-9850145 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 120, 56

Conread position: 292-458
Cow position: chr26:9853819-9853655 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 120, 52

Conread position: 292-525
Cow position: chr26:24280613-24280848 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 81, 167

Conread position: 292-538
Cow position: chr26:10768117-10767874 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 120, 46

Conread position: 292-538
Cow position: chr26:32013415-32013671 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 106, 69

Conread position: 292-596
Cow position: chr26:35704170-35704483 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 200

Conread position: 292-605
Cow position: chr26:6006262-6005953 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 48, 130

Conread position: 292-605
Cow position: chr26:8810916-8811231 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 120, 229

Conread position: 292-610
Cow position: chr26:33744673-33745008 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 236
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 88, 225

Conread position: 292-611
Cow position: chr26:20260374-20260691 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 114, 12

Conread position: 292-613
Cow position: chr26:9491712-9492034 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 46

Conread position: 292-614
Cow position: chr26:8642742-8643054 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 120, 47

Conread position: 292-614
Cow position: chr26:21242887-21243208 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 69, 91

Conread position: 292-614
Cow position: chr26:21637253-21636924 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 141

Conread position: 292-614
Cow position: chr26:34847526-34847857 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 234

Conread position: 293-536
Cow position: chr26:25737256-25737507 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 74, 193

Conread position: 293-547
Cow position: chr26:8186435-8186707 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 87, 0

Conread position: 293-614
Cow position: chr26:31605192-31605519 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 62

Conread position: 296-601
Cow position: chr26:10764007-10764312 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 206
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 82, 163

Conread position: 296-614
Cow position: chr26:33567255-33566931 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 71, 87

Conread position: 300-611
Cow position: chr26:25526038-25526359 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 80, 199

Conread position: 303-555
Cow position: chr26:5306927-5307198 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 58, 189

Conread position: 309-559
Cow position: chr26:20013280-20013537 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 185

Conread position: 313-606
Cow position: chr26:32815970-32815686 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 83

Conread position: 315-614
Cow position: chr26:22892633-22892332 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 28, 40

Conread position: 316-614
Cow position: chr26:17148508-17148817 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 45, 202

Conread position: 322-614
Cow position: chr26:14175095-14175395 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 37, 33

Conread position: 326-599
Cow position: chr26:22249664-22249379 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 45, 169

Conread position: 327-492
Cow position: chr26:27761830-27761660 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 40, 142

Conread position: 329-612
Cow position: chr26:34060154-34060444 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 208
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 51, 24

Conread position: 330-610
Cow position: chr26:23315588-23315883 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 41, 0

Conread position: 330-614
Cow position: chr26:10965753-10965481 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 25

Conread position: 333-602
Cow position: chr26:25299421-25299700 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 28, 69

Conread position: 348-614
Cow position: chr26:2739615-2739342 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 50

Conread position: 359-613
Cow position: chr26:12964843-12964585 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 58, 141

Conread position: 362-611
Cow position: chr26:587016-586770 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 51, 21

Conread position: 362-614
Cow position: chr26:32834718-32834466 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 49, 131

Conread position: 363-614
Cow position: chr26:20769712-20769964 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 53, 99

Conread position: 363-614
Cow position: chr26:28251004-28251269 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 49, 15

Conread position: 364-540
Cow position: chr26:31572110-31572284 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 126

Conread position: 365-614
Cow position: chr26:16721727-16721977 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 22

Conread position: 365-614
Cow position: chr26:31633585-31633841 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 41, 133

Conread position: 366-614
Cow position: chr26:12238163-12237916 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 167
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 97

Conread position: 369-611
Cow position: chr26:26950581-26950345 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 48, 6

Conread position: 374-598
Cow position: chr26:19110053-19110281 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 36, 25

Conread position: 378-614
Cow position: chr26:7315230-7314995 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 112

Conread position: 378-614
Cow position: chr26:22152097-22152340 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 34, 127

Conread position: 388-614
Cow position: chr26:12893539-12893315 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 70, 24

Conread position: 389-528
Cow position: chr26:8341338-8341482 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 395-614
Cow position: chr26:24240565-24240792 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 22, 165

Conread position: 411-614
Cow position: chr26:678072-677867 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 42, 86

Conread position: 413-614
Cow position: chr26:6514751-6514956 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 46, 81

Conread position: 414-614
Cow position: chr26:7687330-7687132 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 116, 54

Conread position: 477-614
Cow position: chr26:12940377-12940513 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 50, 12

Show alignments to all cow chromosomes.