Cow genome map

Conread name: rthg11_h16.y1

Conread position: 164-611
Cow position:
Alignm length: 449
Alignm identity: 289
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 125, 81

Conread position: 164-614
Cow position:
Alignm length: 468
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 83

Conread position: 166-614
Cow position:
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 18

Conread position: 170-459
Cow position:
Alignm length: 302
Alignm identity: 213
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 102, 31

Conread position: 170-607
Cow position:
Alignm length: 443
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 79

Conread position: 170-611
Cow position:
Alignm length: 456
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 78

Conread position: 170-614
Cow position:
Alignm length: 454
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 26

Conread position: 170-614
Cow position:
Alignm length: 452
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 9

Conread position: 171-460
Cow position:
Alignm length: 300
Alignm identity: 218
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 112, 9

Conread position: 171-480
Cow position:
Alignm length: 321
Alignm identity: 221
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 240, 91

Conread position: 171-524
Cow position:
Alignm length: 368
Alignm identity: 251
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 196, 12

Conread position: 171-538
Cow position:
Alignm length: 378
Alignm identity: 256
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 209, 73

Conread position: 171-563
Cow position:
Alignm length: 404
Alignm identity: 270
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 126, 74

Conread position: 171-593
Cow position:
Alignm length: 441
Alignm identity: 294
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 33, 50

Conread position: 171-595
Cow position:
Alignm length: 451
Alignm identity: 305
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 96, 189

Conread position: 171-596
Cow position:
Alignm length: 440
Alignm identity: 291
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 195, 42

Conread position: 171-598
Cow position:
Alignm length: 438
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 54

Conread position: 171-599
Cow position:
Alignm length: 439
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 53

Conread position: 171-602
Cow position:
Alignm length: 462
Alignm identity: 313
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 78, 298

Conread position: 171-602
Cow position:
Alignm length: 449
Alignm identity: 303
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 125, 77

Conread position: 171-603
Cow position:
Alignm length: 450
Alignm identity: 305
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 76, 57

Conread position: 171-604
Cow position:
Alignm length: 454
Alignm identity: 315
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 188, 74

Conread position: 171-605
Cow position:
Alignm length: 450
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 88

Conread position: 171-605
Cow position:
Alignm length: 447
Alignm identity: 292
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 124, 73

Conread position: 171-605
Cow position:
Alignm length: 450
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 72

Conread position: 171-610
Cow position:
Alignm length: 456
Alignm identity: 309
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 43

Conread position: 171-612
Cow position:
Alignm length: 451
Alignm identity: 301
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 147, 74

Conread position: 171-613
Cow position:
Alignm length: 454
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 102

Conread position: 171-613
Cow position:
Alignm length: 456
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 73

Conread position: 171-614
Cow position:
Alignm length: 456
Alignm identity: 306
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 206, 78

Conread position: 171-614
Cow position:
Alignm length: 460
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 72

Conread position: 171-614
Cow position:
Alignm length: 451
Alignm identity: 309
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 209, 78

Conread position: 171-614
Cow position:
Alignm length: 455
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 74

Conread position: 171-614
Cow position:
Alignm length: 457
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 76

Conread position: 171-614
Cow position:
Alignm length: 455
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 65

Conread position: 171-614
Cow position:
Alignm length: 454
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 80

Conread position: 171-614
Cow position:
Alignm length: 467
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 74

Conread position: 172-605
Cow position:
Alignm length: 447
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 73

Conread position: 173-541
Cow position:
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 71

Conread position: 173-593
Cow position:
Alignm length: 437
Alignm identity: 294
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 123, 75

Conread position: 173-600
Cow position:
Alignm length: 444
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 38

Conread position: 173-611
Cow position:
Alignm length: 452
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 72

Conread position: 174-596
Cow position:
Alignm length: 438
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 51

Conread position: 176-584
Cow position:
Alignm length: 423
Alignm identity: 283
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 86, 35

Conread position: 177-614
Cow position:
Alignm length: 455
Alignm identity: 310
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 194, 74

Conread position: 182-605
Cow position:
Alignm length: 441
Alignm identity: 296
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 229, 63

Conread position: 193-601
Cow position:
Alignm length: 432
Alignm identity: 284
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 49, 66

Conread position: 207-605
Cow position:
Alignm length: 408
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 38

Conread position: 209-614
Cow position:
Alignm length: 420
Alignm identity: 285
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 138, 34

Conread position: 216-614
Cow position:
Alignm length: 410
Alignm identity: 281
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 155, 29

Conread position: 221-614
Cow position:
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 30

Conread position: 243-458
Cow position:
Alignm length: 227
Alignm identity: 170
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 23, 13

Conread position: 243-460
Cow position:
Alignm length: 231
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 180

Conread position: 247-610
Cow position:
Alignm length: 378
Alignm identity: 246
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 39, 162

Conread position: 248-462
Cow position:
Alignm length: 226
Alignm identity: 165
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 265-602
Cow position:
Alignm length: 361
Alignm identity: 252
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 31, 10

Conread position: 277-584
Cow position:
Alignm length: 322
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 69

Conread position: 282-507
Cow position:
Alignm length: 233
Alignm identity: 183
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 11, 51

Conread position: 282-521
Cow position:
Alignm length: 256
Alignm identity: 192
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 14, 0

Conread position: 282-524
Cow position:
Alignm length: 251
Alignm identity: 186
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 14, 208

Conread position: 282-546
Cow position:
Alignm length: 276
Alignm identity: 197
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 14, 216

Conread position: 282-611
Cow position:
Alignm length: 336
Alignm identity: 216
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 14, 98

Conread position: 282-612
Cow position:
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 257

Conread position: 282-614
Cow position:
Alignm length: 342
Alignm identity: 224
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 126, 14

Conread position: 282-614
Cow position:
Alignm length: 346
Alignm identity: 221
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 16, 242

Conread position: 282-614
Cow position:
Alignm length: 348
Alignm identity: 239
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 10, 41

Conread position: 284-614
Cow position:
Alignm length: 340
Alignm identity: 236
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 12, 83

Conread position: 287-460
Cow position:
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 9

Conread position: 289-612
Cow position:
Alignm length: 334
Alignm identity: 234
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 29, 77

Conread position: 291-601
Cow position:
Alignm length: 313
Alignm identity: 219
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 102, 87

Conread position: 291-614
Cow position:
Alignm length: 330
Alignm identity: 234
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 123, 37

Conread position: 292-448
Cow position:
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 292-451
Cow position:
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 292-498
Cow position:
Alignm length: 210
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 118, 75

Conread position: 292-498
Cow position:
Alignm length: 219
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 75, 0

Conread position: 292-537
Cow position:
Alignm length: 252
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 76, 142

Conread position: 292-538
Cow position:
Alignm length: 262
Alignm identity: 192
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 63, 107

Conread position: 292-554
Cow position:
Alignm length: 274
Alignm identity: 189
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 89, 206

Conread position: 292-584
Cow position:
Alignm length: 306
Alignm identity: 212
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 13, 207

Conread position: 292-600
Cow position:
Alignm length: 323
Alignm identity: 232
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 69, 36

Conread position: 292-602
Cow position:
Alignm length: 321
Alignm identity: 221
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 88, 204

Conread position: 292-610
Cow position:
Alignm length: 348
Alignm identity: 246
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 86, 287

Conread position: 292-611
Cow position:
Alignm length: 330
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 171

Conread position: 292-612
Cow position:
Alignm length: 329
Alignm identity: 232
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 120, 69

Conread position: 292-613
Cow position:
Alignm length: 329
Alignm identity: 222
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 75, 173

Conread position: 292-614
Cow position:
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 86

Conread position: 292-614
Cow position:
Alignm length: 333
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 69, 52

Conread position: 292-614
Cow position:
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 93

Conread position: 292-614
Cow position:
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 65

Conread position: 292-614
Cow position:
Alignm length: 333
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 275

Conread position: 292-614
Cow position:
Alignm length: 327
Alignm identity: 228
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 88, 42

Conread position: 293-491
Cow position:
Alignm length: 209
Alignm identity: 144
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 293-541
Cow position:
Alignm length: 261
Alignm identity: 186
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 74, 204

Conread position: 293-614
Cow position:
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 63

Conread position: 294-614
Cow position:
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 67

Conread position: 296-614
Cow position:
Alignm length: 333
Alignm identity: 236
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 73, 148

Conread position: 296-614
Cow position:
Alignm length: 329
Alignm identity: 227
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 79, 13

Conread position: 299-509
Cow position:
Alignm length: 218
Alignm identity: 162
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 68, 86

Conread position: 318-602
Cow position:
Alignm length: 297
Alignm identity: 194
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 171

Conread position: 318-614
Cow position:
Alignm length: 298
Alignm identity: 205
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 209, 59

Conread position: 320-611
Cow position:
Alignm length: 303
Alignm identity: 200
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 179

Conread position: 320-612
Cow position:
Alignm length: 303
Alignm identity: 209
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 55, 117

Conread position: 326-614
Cow position:
Alignm length: 301
Alignm identity: 213
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 41, 56

Conread position: 327-460
Cow position:
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 330-614
Cow position:
Alignm length: 294
Alignm identity: 209
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 87, 24

Conread position: 334-587
Cow position:
Alignm length: 270
Alignm identity: 186
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 33, 167

Conread position: 335-524
Cow position:
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 25

Conread position: 341-579
Cow position:
Alignm length: 247
Alignm identity: 186
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 71, 217

Conread position: 349-614
Cow position:
Alignm length: 276
Alignm identity: 201
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 18, 36

Conread position: 355-612
Cow position:
Alignm length: 264
Alignm identity: 181
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 56

Conread position: 358-611
Cow position:
Alignm length: 263
Alignm identity: 186
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 29, 34

Conread position: 363-602
Cow position:
Alignm length: 251
Alignm identity: 172
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 49, 133

Conread position: 363-603
Cow position:
Alignm length: 250
Alignm identity: 179
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 49, 200

Conread position: 363-611
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 97

Conread position: 363-614
Cow position:
Alignm length: 259
Alignm identity: 188
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 49, 131

Conread position: 368-613
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 14

Conread position: 373-613
Cow position:
Alignm length: 245
Alignm identity: 170
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 94

Conread position: 375-614
Cow position:
Alignm length: 247
Alignm identity: 174
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 37, 149

Conread position: 386-613
Cow position:
Alignm length: 234
Alignm identity: 160
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 31, 51

Conread position: 386-614
Cow position:
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 180

Conread position: 392-614
Cow position:
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 26

Conread position: 405-605
Cow position:
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 414-613
Cow position:
Alignm length: 202
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 36

Conread position: 414-614
Cow position:
Alignm length: 201
Alignm identity: 137
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 415-614
Cow position:
Alignm length: 205
Alignm identity: 142
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 83

Conread position: 415-614
Cow position:
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 112, 41

Conread position: 450-614
Cow position:
Alignm length: 166
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 110

Conread position: 458-614
Cow position:
Alignm length: 158
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 103

Conread position: 460-610
Cow position:
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 106

Conread position: 489-614
Cow position:
Alignm length: 127
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 71

Show alignments to all cow chromosomes.