Cow genome map

Conread name: rthg11_h16.y1

Conread position: 162-591
Cow position:
Alignm length: 455
Alignm identity: 304
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 106, 83

Conread position: 164-581
Cow position:
Alignm length: 434
Alignm identity: 280
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 62, 48

Conread position: 166-524
Cow position:
Alignm length: 384
Alignm identity: 266
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 96, 107

Conread position: 166-604
Cow position:
Alignm length: 451
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 76

Conread position: 170-521
Cow position:
Alignm length: 362
Alignm identity: 240
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 210, 83

Conread position: 170-597
Cow position:
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 20

Conread position: 170-614
Cow position:
Alignm length: 479
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 76

Conread position: 171-458
Cow position:
Alignm length: 298
Alignm identity: 208
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 125, 74

Conread position: 171-485
Cow position:
Alignm length: 332
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 171-514
Cow position:
Alignm length: 357
Alignm identity: 248
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 97, 42

Conread position: 171-521
Cow position:
Alignm length: 369
Alignm identity: 253
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 57, 49

Conread position: 171-540
Cow position:
Alignm length: 380
Alignm identity: 263
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 29, 76

Conread position: 171-562
Cow position:
Alignm length: 405
Alignm identity: 280
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 91, 102

Conread position: 171-584
Cow position:
Alignm length: 430
Alignm identity: 286
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 209, 73

Conread position: 171-596
Cow position:
Alignm length: 437
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 54

Conread position: 171-598
Cow position:
Alignm length: 442
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 110

Conread position: 171-605
Cow position:
Alignm length: 447
Alignm identity: 300
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 207, 85

Conread position: 171-611
Cow position:
Alignm length: 455
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 36

Conread position: 171-612
Cow position:
Alignm length: 453
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 117

Conread position: 171-613
Cow position:
Alignm length: 462
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 331

Conread position: 171-614
Cow position:
Alignm length: 456
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 74

Conread position: 171-614
Cow position:
Alignm length: 452
Alignm identity: 302
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 196, 72

Conread position: 171-614
Cow position:
Alignm length: 460
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 190

Conread position: 171-614
Cow position:
Alignm length: 457
Alignm identity: 306
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 209, 73

Conread position: 171-614
Cow position:
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 73

Conread position: 171-614
Cow position:
Alignm length: 455
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 74

Conread position: 171-614
Cow position:
Alignm length: 448
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 78

Conread position: 172-515
Cow position:
Alignm length: 351
Alignm identity: 243
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 243, 88

Conread position: 172-557
Cow position:
Alignm length: 395
Alignm identity: 260
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 231, 66

Conread position: 172-593
Cow position:
Alignm length: 437
Alignm identity: 297
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 124, 73

Conread position: 172-614
Cow position:
Alignm length: 459
Alignm identity: 302
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 195, 72

Conread position: 173-460
Cow position:
Alignm length: 306
Alignm identity: 215
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 76, 70

Conread position: 173-605
Cow position:
Alignm length: 449
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 71

Conread position: 173-611
Cow position:
Alignm length: 460
Alignm identity: 317
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 188, 73

Conread position: 173-614
Cow position:
Alignm length: 450
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 70

Conread position: 173-614
Cow position:
Alignm length: 447
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 40

Conread position: 173-614
Cow position:
Alignm length: 450
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 72

Conread position: 174-509
Cow position:
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 92

Conread position: 174-602
Cow position:
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 59

Conread position: 176-611
Cow position:
Alignm length: 444
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 70

Conread position: 177-605
Cow position:
Alignm length: 447
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 36

Conread position: 180-614
Cow position:
Alignm length: 441
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 65

Conread position: 183-605
Cow position:
Alignm length: 429
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 62

Conread position: 186-482
Cow position:
Alignm length: 309
Alignm identity: 213
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 181, 59

Conread position: 223-524
Cow position:
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 52

Conread position: 226-612
Cow position:
Alignm length: 397
Alignm identity: 262
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 57, 30

Conread position: 242-610
Cow position:
Alignm length: 380
Alignm identity: 264
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 7, 48

Conread position: 249-614
Cow position:
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 254

Conread position: 253-611
Cow position:
Alignm length: 375
Alignm identity: 252
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 136

Conread position: 255-605
Cow position:
Alignm length: 369
Alignm identity: 250
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 8

Conread position: 262-605
Cow position:
Alignm length: 355
Alignm identity: 235
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 34

Conread position: 272-498
Cow position:
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 20

Conread position: 275-613
Cow position:
Alignm length: 355
Alignm identity: 241
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 7

Conread position: 277-484
Cow position:
Alignm length: 218
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 103

Conread position: 277-614
Cow position:
Alignm length: 351
Alignm identity: 234
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 10, 262

Conread position: 279-485
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 201

Conread position: 279-559
Cow position:
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 65

Conread position: 281-587
Cow position:
Alignm length: 313
Alignm identity: 223
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 11, 171

Conread position: 282-515
Cow position:
Alignm length: 250
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 85, 14

Conread position: 282-594
Cow position:
Alignm length: 330
Alignm identity: 227
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 210

Conread position: 282-602
Cow position:
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 10

Conread position: 282-605
Cow position:
Alignm length: 334
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 126

Conread position: 282-613
Cow position:
Alignm length: 339
Alignm identity: 236
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 14, 56

Conread position: 282-613
Cow position:
Alignm length: 335
Alignm identity: 229
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 130, 14

Conread position: 282-614
Cow position:
Alignm length: 346
Alignm identity: 245
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 81

Conread position: 284-595
Cow position:
Alignm length: 321
Alignm identity: 212
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 20

Conread position: 287-521
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 291-503
Cow position:
Alignm length: 220
Alignm identity: 170
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 121, 76

Conread position: 291-602
Cow position:
Alignm length: 325
Alignm identity: 228
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 89, 198

Conread position: 291-607
Cow position:
Alignm length: 330
Alignm identity: 227
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 80, 48

Conread position: 292-538
Cow position:
Alignm length: 265
Alignm identity: 194
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 68, 0

Conread position: 292-540
Cow position:
Alignm length: 267
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 88, 46

Conread position: 292-593
Cow position:
Alignm length: 315
Alignm identity: 226
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 75, 47

Conread position: 292-595
Cow position:
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 270

Conread position: 292-595
Cow position:
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 172

Conread position: 292-601
Cow position:
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 208

Conread position: 292-605
Cow position:
Alignm length: 317
Alignm identity: 218
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 75, 92

Conread position: 292-612
Cow position:
Alignm length: 326
Alignm identity: 219
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 63, 40

Conread position: 292-614
Cow position:
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 266

Conread position: 292-614
Cow position:
Alignm length: 336
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 118

Conread position: 292-614
Cow position:
Alignm length: 332
Alignm identity: 228
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 203

Conread position: 292-614
Cow position:
Alignm length: 327
Alignm identity: 229
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 120, 204

Conread position: 292-614
Cow position:
Alignm length: 331
Alignm identity: 232
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 114, 65

Conread position: 292-614
Cow position:
Alignm length: 337
Alignm identity: 242
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 62, 122

Conread position: 292-614
Cow position:
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 212

Conread position: 292-614
Cow position:
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 280

Conread position: 292-614
Cow position:
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 117

Conread position: 292-614
Cow position:
Alignm length: 334
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 172

Conread position: 292-614
Cow position:
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 63

Conread position: 293-460
Cow position:
Alignm length: 175
Alignm identity: 133
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 74, 0

Conread position: 294-602
Cow position:
Alignm length: 313
Alignm identity: 210
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 72, 182

Conread position: 294-614
Cow position:
Alignm length: 328
Alignm identity: 231
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 86, 176

Conread position: 301-614
Cow position:
Alignm length: 326
Alignm identity: 219
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 58, 9

Conread position: 309-614
Cow position:
Alignm length: 326
Alignm identity: 233
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 56, 205

Conread position: 321-611
Cow position:
Alignm length: 292
Alignm identity: 209
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 88, 121

Conread position: 326-613
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 41, 170

Conread position: 327-585
Cow position:
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 116

Conread position: 327-614
Cow position:
Alignm length: 299
Alignm identity: 211
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 40, 12

Conread position: 328-612
Cow position:
Alignm length: 292
Alignm identity: 205
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 57

Conread position: 333-540
Cow position:
Alignm length: 219
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 166

Conread position: 335-614
Cow position:
Alignm length: 292
Alignm identity: 209
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 35, 150

Conread position: 338-596
Cow position:
Alignm length: 276
Alignm identity: 184
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 161

Conread position: 347-614
Cow position:
Alignm length: 280
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 51

Conread position: 348-614
Cow position:
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 6

Conread position: 349-614
Cow position:
Alignm length: 271
Alignm identity: 192
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 63, 5

Conread position: 354-614
Cow position:
Alignm length: 269
Alignm identity: 195
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 9

Conread position: 356-614
Cow position:
Alignm length: 272
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 130

Conread position: 360-603
Cow position:
Alignm length: 254
Alignm identity: 172
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 23

Conread position: 363-614
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 131, 39

Conread position: 365-595
Cow position:
Alignm length: 237
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 197

Conread position: 365-614
Cow position:
Alignm length: 252
Alignm identity: 175
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 127, 66

Conread position: 366-611
Cow position:
Alignm length: 254
Alignm identity: 178
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 44, 167

Conread position: 368-581
Cow position:
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 193

Conread position: 369-613
Cow position:
Alignm length: 255
Alignm identity: 183
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 196

Conread position: 376-613
Cow position:
Alignm length: 245
Alignm identity: 169
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 15

Conread position: 386-608
Cow position:
Alignm length: 232
Alignm identity: 171
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 31, 103

Conread position: 387-614
Cow position:
Alignm length: 232
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 51

Conread position: 395-614
Cow position:
Alignm length: 227
Alignm identity: 159
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 17, 171

Show alignments to all cow chromosomes.