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Cow genome map

           
Conread name:
           
rthg11_h16.y1
        

               
Conread position:
               
132-614
               

               
Cow position:
               
chr4:45589979-45589512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
280, 113
               

               
Conread position:
               
144-524
               

               
Cow position:
               
chr4:285276-285643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
48, 102
               

               
Conread position:
               
157-602
               

               
Cow position:
               
chr4:8947031-8947472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 118
               

               
Conread position:
               
161-535
               

               
Cow position:
               
chr4:46274830-46275189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
198, 84
               

               
Conread position:
               
162-611
               

               
Cow position:
               
chr4:12003861-12004300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 83
               

               
Conread position:
               
164-612
               

               
Cow position:
               
chr4:13694029-13693585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 51
               

               
Conread position:
               
164-614
               

               
Cow position:
               
chr4:10731860-10732312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 43
               

               
Conread position:
               
165-598
               

               
Cow position:
               
chr4:21064674-21065109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 108
               

               
Conread position:
               
166-537
               

               
Cow position:
               
chr4:19438087-19438478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
99, 37
               

               
Conread position:
               
166-614
               

               
Cow position:
               
chr4:48152728-48152286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
168-594
               

               
Cow position:
               
chr4:15904745-15905171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 81
               

               
Conread position:
               
168-599
               

               
Cow position:
               
chr4:4185765-4186193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 76
               

               
Conread position:
               
168-605
               

               
Cow position:
               
chr4:61897888-61897455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 77
               

               
Conread position:
               
170-605
               

               
Cow position:
               
chr4:59056193-59055781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
242, 81
               

               
Conread position:
               
170-612
               

               
Cow position:
               
chr4:22841996-22842432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 75
               

               
Conread position:
               
170-614
               

               
Cow position:
               
chr4:45644667-45644229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 79
               

               
Conread position:
               
171-451
               

               
Cow position:
               
chr4:26163325-26163050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
171-452
               

               
Cow position:
               
chr4:67392608-67392883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
122, 53
               

               
Conread position:
               
171-461
               

               
Cow position:
               
chr4:26549103-26549392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
87, 73
               

               
Conread position:
               
171-463
               

               
Cow position:
               
chr4:7249922-7249634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
241, 72
               

               
Conread position:
               
171-495
               

               
Cow position:
               
chr4:36840927-36841258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 83
               

               
Conread position:
               
171-504
               

               
Cow position:
               
chr4:39009616-39009947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 74
               

               
Conread position:
               
171-512
               

               
Cow position:
               
chr4:43370203-43369859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 74
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr4:561050-561391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
125, 7
               

               
Conread position:
               
171-524
               

               
Cow position:
               
chr4:19584351-19584715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
89, 102
               

               
Conread position:
               
171-536
               

               
Cow position:
               
chr4:22236828-22236468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
171-557
               

               
Cow position:
               
chr4:46059094-46058731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
124, 74
               

               
Conread position:
               
171-558
               

               
Cow position:
               
chr4:13832973-13832574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 205
               

               
Conread position:
               
171-592
               

               
Cow position:
               
chr4:51898649-51899073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 78
               

               
Conread position:
               
171-594
               

               
Cow position:
               
chr4:13589741-13590152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
171-594
               

               
Cow position:
               
chr4:23526338-23526763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
171-595
               

               
Cow position:
               
chr4:26323389-26323810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
196, 73
               

               
Conread position:
               
171-598
               

               
Cow position:
               
chr4:47730518-47730931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 65
               

               
Conread position:
               
171-598
               

               
Cow position:
               
chr4:66112427-66111998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 88
               

               
Conread position:
               
171-603
               

               
Cow position:
               
chr4:28836179-28836615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
171-612
               

               
Cow position:
               
chr4:64039759-64040202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:3421293-3421711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
178, 73
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:4084801-4084361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 42
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:7429969-7430409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:11872265-11871833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 74
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:19096942-19097376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 69
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:20328065-20327620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 73
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:21257479-21257035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 73
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:21392150-21391723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 42
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:21531982-21531555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:36893003-36893448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 79
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:40414984-40414539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 74
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:41301353-41300909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 96
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:49794329-49794748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr4:62471715-62472168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 74
               

               
Conread position:
               
172-456
               

               
Cow position:
               
chr4:5610421-5610143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
197, 70
               

               
Conread position:
               
172-524
               

               
Cow position:
               
chr4:46526648-46526994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
172-594
               

               
Cow position:
               
chr4:12903465-12903890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
172-607
               

               
Cow position:
               
chr4:17474070-17474521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
172-612
               

               
Cow position:
               
chr4:16602407-16601976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
172-613
               

               
Cow position:
               
chr4:3283823-3283359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 289
               

               
Conread position:
               
172-613
               

               
Cow position:
               
chr4:20139880-20139429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 72
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr4:20575-21001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
125, 50
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr4:6653389-6653811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
212, 11
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr4:12560675-12561129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr4:51783819-51784268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr4:51850847-51851301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 44
               

               
Conread position:
               
173-454
               

               
Cow position:
               
chr4:14513587-14513310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
194, 17
               

               
Conread position:
               
173-485
               

               
Cow position:
               
chr4:11091031-11090737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
173-538
               

               
Cow position:
               
chr4:480358-479994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
173-557
               

               
Cow position:
               
chr4:37620238-37619855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 71
               

               
Conread position:
               
173-559
               

               
Cow position:
               
chr4:13271798-13272178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
198, 19
               

               
Conread position:
               
173-591
               

               
Cow position:
               
chr4:42672820-42673242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
173-595
               

               
Cow position:
               
chr4:11022028-11021581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 201
               

               
Conread position:
               
173-612
               

               
Cow position:
               
chr4:12591561-12591127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 36
               

               
Conread position:
               
173-613
               

               
Cow position:
               
chr4:11100015-11099567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
173-613
               

               
Cow position:
               
chr4:33971247-33970809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 50
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr4:46477289-46476857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
202, 70
               

               
Conread position:
               
174-612
               

               
Cow position:
               
chr4:19434910-19435342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
174-614
               

               
Cow position:
               
chr4:3850207-3850640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 57
               

               
Conread position:
               
175-485
               

               
Cow position:
               
chr4:57555617-57555933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
186, 74
               

               
Conread position:
               
175-612
               

               
Cow position:
               
chr4:25879048-25879477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 74
               

               
Conread position:
               
175-612
               

               
Cow position:
               
chr4:26400608-26401042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 87
               

               
Conread position:
               
176-524
               

               
Cow position:
               
chr4:52167213-52166852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
177-521
               

               
Cow position:
               
chr4:22051815-22051475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
177-614
               

               
Cow position:
               
chr4:29805727-29805285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 180
               

               
Conread position:
               
177-614
               

               
Cow position:
               
chr4:44782027-44782463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 68
               

               
Conread position:
               
177-614
               

               
Cow position:
               
chr4:54190761-54191178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 39
               

               
Conread position:
               
178-461
               

               
Cow position:
               
chr4:65731273-65730985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 71
               

               
Conread position:
               
178-614
               

               
Cow position:
               
chr4:42424146-42423716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 29
               

               
Conread position:
               
180-607
               

               
Cow position:
               
chr4:10916181-10915754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 68
               

               
Conread position:
               
185-606
               

               
Cow position:
               
chr4:13327293-13326874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
182, 74
               

               
Conread position:
               
190-614
               

               
Cow position:
               
chr4:68764183-68764604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
108, 54
               

               
Conread position:
               
193-614
               

               
Cow position:
               
chr4:509229-508820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 82
               

               
Conread position:
               
193-614
               

               
Cow position:
               
chr4:22010389-22009969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 52
               

               
Conread position:
               
198-614
               

               
Cow position:
               
chr4:37915655-37915247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 47
               

               
Conread position:
               
204-456
               

               
Cow position:
               
chr4:19561375-19561612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
208, 57
               

               
Conread position:
               
204-607
               

               
Cow position:
               
chr4:19597634-19597242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
223-614
               

               
Cow position:
               
chr4:19744570-19744964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
223-614
               

               
Cow position:
               
chr4:45662801-45662424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
187, 22
               

               
Conread position:
               
223-614
               

               
Cow position:
               
chr4:48961791-48961397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
227-613
               

               
Cow position:
               
chr4:5999503-5999108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 339
               

               
Conread position:
               
231-538
               

               
Cow position:
               
chr4:53545736-53546043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
245-612
               

               
Cow position:
               
chr4:68233691-68234059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
247-594
               

               
Cow position:
               
chr4:18095968-18095605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 270
               

               
Conread position:
               
247-612
               

               
Cow position:
               
chr4:53208009-53208380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
247-614
               

               
Cow position:
               
chr4:45738774-45738386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 325
               

               
Conread position:
               
248-611
               

               
Cow position:
               
chr4:5461145-5460775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
254-614
               

               
Cow position:
               
chr4:27529837-27530207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
256-614
               

               
Cow position:
               
chr4:12676535-12676888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
40, 99
               

               
Conread position:
               
258-597
               

               
Cow position:
               
chr4:11331812-11332169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
269-612
               

               
Cow position:
               
chr4:49159045-49158708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
280-538
               

               
Cow position:
               
chr4:13255842-13256100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
282-478
               

               
Cow position:
               
chr4:54667943-54667733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
282-533
               

               
Cow position:
               
chr4:37470299-37470561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
282-538
               

               
Cow position:
               
chr4:46597131-46597393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
282-575
               

               
Cow position:
               
chr4:33421613-33421316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 175
               

               
Conread position:
               
282-591
               

               
Cow position:
               
chr4:54930668-54930356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
282-605
               

               
Cow position:
               
chr4:16799444-16799106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 291
               

               
Conread position:
               
282-611
               

               
Cow position:
               
chr4:23445303-23444961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
282-613
               

               
Cow position:
               
chr4:3340699-3341040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 279
               

               
Conread position:
               
282-614
               

               
Cow position:
               
chr4:12048993-12049335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
284-614
               

               
Cow position:
               
chr4:38935109-38935447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 283
               

               
Conread position:
               
287-614
               

               
Cow position:
               
chr4:22724878-22725179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
172, 39
               

               
Conread position:
               
289-557
               

               
Cow position:
               
chr4:19463246-19463529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 219
               

               
Conread position:
               
292-457
               

               
Cow position:
               
chr4:26307740-26307570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 56
               

               
Conread position:
               
292-477
               

               
Cow position:
               
chr4:44073010-44072812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
292-480
               

               
Cow position:
               
chr4:23570557-23570760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
292-521
               

               
Cow position:
               
chr4:24688589-24688349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
69, 175
               

               
Conread position:
               
292-534
               

               
Cow position:
               
chr4:67408298-67408537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
292-562
               

               
Cow position:
               
chr4:20299030-20299313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 113
               

               
Conread position:
               
292-573
               

               
Cow position:
               
chr4:43895045-43894765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
122, 67
               

               
Conread position:
               
292-584
               

               
Cow position:
               
chr4:51866755-51867051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
292-589
               

               
Cow position:
               
chr4:46550144-46550444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
79, 147
               

               
Conread position:
               
292-591
               

               
Cow position:
               
chr4:49089554-49089843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
120, 88
               

               
Conread position:
               
292-596
               

               
Cow position:
               
chr4:51739943-51739646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
115, 69
               

               
Conread position:
               
292-598
               

               
Cow position:
               
chr4:21233111-21232801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
292-601
               

               
Cow position:
               
chr4:11897539-11897220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
88, 213
               

               
Conread position:
               
292-605
               

               
Cow position:
               
chr4:34209786-34210113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
63, 248
               

               
Conread position:
               
292-608
               

               
Cow position:
               
chr4:34641969-34641643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
292-610
               

               
Cow position:
               
chr4:19582855-19582533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
292-610
               

               
Cow position:
               
chr4:65431905-65432235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
292-611
               

               
Cow position:
               
chr4:34310695-34310373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 185
               

               
Conread position:
               
292-612
               

               
Cow position:
               
chr4:395710-396021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 61
               

               
Conread position:
               
292-612
               

               
Cow position:
               
chr4:19322319-19321991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 73
               

               
Conread position:
               
292-612
               

               
Cow position:
               
chr4:23509348-23509680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 278
               

               
Conread position:
               
292-612
               

               
Cow position:
               
chr4:23847291-23846964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 92
               

               
Conread position:
               
292-612
               

               
Cow position:
               
chr4:44612762-44613092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
75, 211
               

               
Conread position:
               
292-613
               

               
Cow position:
               
chr4:4321246-4320903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
67, 210
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:19699859-19700184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
13, 185
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:23599930-23600256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 166
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:28772307-28771978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 103
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:29291282-29291603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:34630661-34630987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 85
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:35981749-35982087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 322
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:36730950-36731279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
65, 202
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:39128289-39128626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
12, 275
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:54455584-54455254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 208
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:59785077-59785411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 271
               

               
Conread position:
               
292-614
               

               
Cow position:
               
chr4:65919377-65919697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 73
               

               
Conread position:
               
293-532
               

               
Cow position:
               
chr4:16736264-16736508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
87, 176
               

               
Conread position:
               
294-612
               

               
Cow position:
               
chr4:20157650-20157330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
294-614
               

               
Cow position:
               
chr4:58881205-58880872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 220
               

               
Conread position:
               
295-551
               

               
Cow position:
               
chr4:8801270-8801535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
115, 66
               

               
Conread position:
               
295-602
               

               
Cow position:
               
chr4:25356543-25356243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
297-482
               

               
Cow position:
               
chr4:25359376-25359569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
298-525
               

               
Cow position:
               
chr4:41908026-41907801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 164
               

               
Conread position:
               
300-456
               

               
Cow position:
               
chr4:43750044-43749880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
300-614
               

               
Cow position:
               
chr4:45583360-45583034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 203
               

               
Conread position:
               
302-612
               

               
Cow position:
               
chr4:13222406-13222100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
304-460
               

               
Cow position:
               
chr4:44902215-44902368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
113, 55
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr4:63860107-63859879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
307-598
               

               
Cow position:
               
chr4:24810672-24810379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
23, 184
               

               
Conread position:
               
309-614
               

               
Cow position:
               
chr4:19408223-19407909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
313-614
               

               
Cow position:
               
chr4:59277699-59277391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 190
               

               
Conread position:
               
316-524
               

               
Cow position:
               
chr4:36724826-36725040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
319-611
               

               
Cow position:
               
chr4:31506243-31505938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
319-614
               

               
Cow position:
               
chr4:13974185-13973881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 179
               

               
Conread position:
               
326-614
               

               
Cow position:
               
chr4:51768906-51769192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
332-613
               

               
Cow position:
               
chr4:43515522-43515804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 163
               

               
Conread position:
               
332-614
               

               
Cow position:
               
chr4:17774551-17774261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
333-614
               

               
Cow position:
               
chr4:54111544-54111830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 141
               

               
Conread position:
               
336-612
               

               
Cow position:
               
chr4:38944461-38944171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 175
               

               
Conread position:
               
340-614
               

               
Cow position:
               
chr4:10378918-10379200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 193
               

               
Conread position:
               
344-602
               

               
Cow position:
               
chr4:46552508-46552261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 139
               

               
Conread position:
               
344-614
               

               
Cow position:
               
chr4:50769952-50769677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 218
               

               
Conread position:
               
348-612
               

               
Cow position:
               
chr4:13344367-13344625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
64, 6
               

               
Conread position:
               
349-614
               

               
Cow position:
               
chr4:34369636-34369361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 77
               

               
Conread position:
               
363-605
               

               
Cow position:
               
chr4:16881530-16881281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 129
               

               
Conread position:
               
363-612
               

               
Cow position:
               
chr4:20147018-20147270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
365-614
               

               
Cow position:
               
chr4:19501249-19501003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
366-614
               

               
Cow position:
               
chr4:17186517-17186262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
54, 134
               

               
Conread position:
               
370-612
               

               
Cow position:
               
chr4:36290468-36290711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
372-614
               

               
Cow position:
               
chr4:59377756-59377998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
40, 116
               

               
Conread position:
               
374-605
               

               
Cow position:
               
chr4:53346170-53346407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
38, 121
               

               
Conread position:
               
378-614
               

               
Cow position:
               
chr4:19118854-19119106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 196
               

               
Conread position:
               
380-541
               

               
Cow position:
               
chr4:47047743-47047912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
381-614
               

               
Cow position:
               
chr4:48409415-48409180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
383-614
               

               
Cow position:
               
chr4:20027248-20027015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
386-614
               

               
Cow position:
               
chr4:37313026-37313254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
386-614
               

               
Cow position:
               
chr4:54927584-54927351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
387-614
               

               
Cow position:
               
chr4:20184570-20184790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
394-605
               

               
Cow position:
               
chr4:13771525-13771322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
396-614
               

               
Cow position:
               
chr4:68889691-68889472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
17, 65
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr4:38157206-38156999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 160
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr4:44449619-44449420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr4:45636049-45636255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
415-605
               

               
Cow position:
               
chr4:13026189-13026384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 136
               

               
Conread position:
               
418-614
               

               
Cow position:
               
chr4:19098359-19098561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
419-598
               

               
Cow position:
               
chr4:48422770-48422950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
433-614
               

               
Cow position:
               
chr4:19323884-19324063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
438-600
               

               
Cow position:
               
chr4:19493470-19493630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
458-614
               

               
Cow position:
               
chr4:17851318-17851164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
464-614
               

               
Cow position:
               
chr4:65131514-65131364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 94
               
Show alignments to all cow chromosomes.