Cow genome map

Conread name: rthg11_h16.y1

Conread position: 162-601
Cow position: chr5:29827724-29828156 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 83

Conread position: 164-611
Cow position: chr5:30276368-30276809 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 85

Conread position: 164-611
Cow position: chr5:42667719-42667267 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 308
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 104, 118

Conread position: 164-614
Cow position: chr5:14314196-14314650 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 43

Conread position: 164-614
Cow position: chr5:15363566-15364004 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 79

Conread position: 164-614
Cow position: chr5:21617138-21617580 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 31

Conread position: 168-614
Cow position: chr5:55176569-55177008 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 77

Conread position: 170-605
Cow position: chr5:38805665-38805232 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 293
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 106, 75

Conread position: 170-613
Cow position: chr5:58793935-58793486 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 29

Conread position: 170-614
Cow position: chr5:4710465-4710030 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 307
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 23, 82

Conread position: 171-456
Cow position: chr5:47889035-47888748 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 105, 74

Conread position: 171-460
Cow position: chr5:30816395-30816684 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 200, 74

Conread position: 171-460
Cow position: chr5:47313153-47313441 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 97, 74

Conread position: 171-476
Cow position: chr5:46611404-46611117 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 294, 82

Conread position: 171-479
Cow position: chr5:60519855-60520151 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 241, 73

Conread position: 171-480
Cow position: chr5:14415451-14415763 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 112, 27

Conread position: 171-480
Cow position: chr5:54405214-54404901 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 184, 74

Conread position: 171-492
Cow position: chr5:21524845-21525175 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 190, 22

Conread position: 171-493
Cow position: chr5:35145030-35145352 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 74

Conread position: 171-521
Cow position: chr5:62827075-62826723 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 74

Conread position: 171-523
Cow position: chr5:34115328-34115684 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 99

Conread position: 171-532
Cow position: chr5:44583433-44583093 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 125, 17

Conread position: 171-538
Cow position: chr5:54714062-54713684 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 263
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 201, 118

Conread position: 171-552
Cow position: chr5:21944061-21944456 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 287
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 188, 72

Conread position: 171-557
Cow position: chr5:56442962-56443341 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 156, 45

Conread position: 171-591
Cow position: chr5:25231327-25230913 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 295
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 101, 32

Conread position: 171-591
Cow position: chr5:34887518-34887096 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 287
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 91, 104

Conread position: 171-593
Cow position: chr5:27179339-27179758 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 285
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 125, 48

Conread position: 171-595
Cow position: chr5:45846013-45845588 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 74

Conread position: 171-595
Cow position: chr5:55756761-55756312 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 307
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 97, 65

Conread position: 171-598
Cow position: chr5:69337494-69337926 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 52

Conread position: 171-601
Cow position: chr5:3204518-3204937 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 125, 73

Conread position: 171-602
Cow position: chr5:26096977-26097399 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 78

Conread position: 171-602
Cow position: chr5:65933249-65932833 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 310
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 44, 79

Conread position: 171-605
Cow position: chr5:26094490-26094053 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 303
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 105

Conread position: 171-605
Cow position: chr5:53855382-53855819 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 303
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 40, 75

Conread position: 171-605
Cow position: chr5:66366214-66366622 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 73

Conread position: 171-607
Cow position: chr5:33414725-33414296 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 299
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 214, 80

Conread position: 171-608
Cow position: chr5:26377984-26377551 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 80

Conread position: 171-610
Cow position: chr5:20407978-20407560 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 38

Conread position: 171-611
Cow position: chr5:45226149-45225698 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 74

Conread position: 171-612
Cow position: chr5:16894089-16893651 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 74

Conread position: 171-612
Cow position: chr5:46510188-46509745 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 74

Conread position: 171-612
Cow position: chr5:54311003-54311456 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 96

Conread position: 171-612
Cow position: chr5:65776712-65776265 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 57

Conread position: 171-613
Cow position: chr5:9894444-9894002 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 44

Conread position: 171-614
Cow position: chr5:3582259-3582682 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 78

Conread position: 171-614
Cow position: chr5:6044966-6045418 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 74

Conread position: 171-614
Cow position: chr5:12323114-12322685 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 73

Conread position: 171-614
Cow position: chr5:19813540-19813098 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 73

Conread position: 171-614
Cow position: chr5:21828536-21828989 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 61

Conread position: 171-614
Cow position: chr5:28927917-28927472 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 72

Conread position: 171-614
Cow position: chr5:29903842-29903401 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 74

Conread position: 171-614
Cow position: chr5:30302578-30303013 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 73

Conread position: 171-614
Cow position: chr5:35762970-35763383 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 314
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 105, 74

Conread position: 171-614
Cow position: chr5:37377548-37377975 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 96

Conread position: 171-614
Cow position: chr5:41546210-41545771 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 74

Conread position: 171-614
Cow position: chr5:42744449-42744902 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 184

Conread position: 171-614
Cow position: chr5:43991972-43992446 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 180

Conread position: 171-614
Cow position: chr5:50599746-50600170 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 312
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 207, 74

Conread position: 171-614
Cow position: chr5:62172086-62172534 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 78

Conread position: 172-460
Cow position: chr5:50864038-50864329 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 51, 121

Conread position: 172-491
Cow position: chr5:23647326-23647014 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 210
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 189, 81

Conread position: 172-540
Cow position: chr5:3242784-3242430 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 252
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 240, 76

Conread position: 172-563
Cow position: chr5:30486932-30487314 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 124, 72

Conread position: 172-593
Cow position: chr5:61839869-61840289 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 300
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 104, 77

Conread position: 172-594
Cow position: chr5:14550906-14550482 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 289
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 29, 74

Conread position: 172-614
Cow position: chr5:16206461-16206033 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 102

Conread position: 173-485
Cow position: chr5:31020432-31020143 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 103, 72

Conread position: 173-509
Cow position: chr5:23140895-23140557 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 123, 10

Conread position: 173-577
Cow position: chr5:31145100-31144702 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 72

Conread position: 173-605
Cow position: chr5:56467387-56467803 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 303
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 122, 20

Conread position: 173-613
Cow position: chr5:20783309-20783743 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 50

Conread position: 173-614
Cow position: chr5:4032325-4031864 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 314
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 93, 176

Conread position: 173-614
Cow position: chr5:52165497-52165057 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 71

Conread position: 173-614
Cow position: chr5:58855784-58856224 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 42

Conread position: 175-495
Cow position: chr5:45940929-45940610 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 70, 116

Conread position: 176-537
Cow position: chr5:6086877-6086516 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 199, 86

Conread position: 176-612
Cow position: chr5:5111392-5110956 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 69

Conread position: 177-509
Cow position: chr5:23856477-23856142 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 119, 63

Conread position: 177-614
Cow position: chr5:65941566-65941128 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 46

Conread position: 178-614
Cow position: chr5:17087343-17086899 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 95

Conread position: 179-534
Cow position: chr5:4797625-4797275 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 119, 64

Conread position: 183-590
Cow position: chr5:16508788-16509204 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 294
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 192, 62

Conread position: 183-605
Cow position: chr5:65752551-65752973 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 62

Conread position: 188-614
Cow position: chr5:6504169-6503760 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 298
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 179, 28

Conread position: 189-605
Cow position: chr5:63964483-63964052 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 77

Conread position: 192-613
Cow position: chr5:11668498-11668064 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 187

Conread position: 193-610
Cow position: chr5:65887312-65886892 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 285
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 68, 80

Conread position: 195-480
Cow position: chr5:32963953-32963641 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 50, 0

Conread position: 195-612
Cow position: chr5:26477313-26476898 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 295
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 59, 48

Conread position: 219-459
Cow position: chr5:4507233-4506990 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 54

Conread position: 223-611
Cow position: chr5:32394330-32394718 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 279
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 31, 22

Conread position: 224-614
Cow position: chr5:63992431-63992050 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 137, 21

Conread position: 234-614
Cow position: chr5:50533646-50533266 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 8

Conread position: 237-613
Cow position: chr5:31640170-31640546 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 58, 8

Conread position: 244-614
Cow position: chr5:40109244-40109614 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 22

Conread position: 245-614
Cow position: chr5:25035486-25035136 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 38, 30

Conread position: 248-614
Cow position: chr5:64176372-64176004 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 18

Conread position: 254-614
Cow position: chr5:35684687-35685057 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 12

Conread position: 255-460
Cow position: chr5:1276726-1276499 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 258-611
Cow position: chr5:14904313-14903949 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 101, 19

Conread position: 271-614
Cow position: chr5:65588477-65588821 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 92

Conread position: 282-484
Cow position: chr5:1950279-1950069 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 38

Conread position: 282-520
Cow position: chr5:40928192-40927950 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 16, 33

Conread position: 282-524
Cow position: chr5:65924918-65924657 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 61

Conread position: 282-538
Cow position: chr5:12709667-12709936 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 213

Conread position: 282-612
Cow position: chr5:15426309-15426658 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 14

Conread position: 282-613
Cow position: chr5:30253526-30253862 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 37

Conread position: 282-614
Cow position: chr5:5257516-5257166 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 287

Conread position: 282-614
Cow position: chr5:7723453-7723787 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 14, 29

Conread position: 282-614
Cow position: chr5:56070634-56070981 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 293

Conread position: 282-614
Cow position: chr5:68718664-68718989 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 14, 74

Conread position: 286-537
Cow position: chr5:7140320-7140060 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 7, 77

Conread position: 287-577
Cow position: chr5:46122563-46122268 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 201
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 62, 209

Conread position: 288-524
Cow position: chr5:32956303-32956062 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 79, 40

Conread position: 289-605
Cow position: chr5:58320672-58320358 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 125, 80

Conread position: 291-605
Cow position: chr5:43738160-43737850 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 76, 89

Conread position: 292-451
Cow position: chr5:24642929-24642770 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 96

Conread position: 292-480
Cow position: chr5:57271472-57271275 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 60, 74

Conread position: 292-483
Cow position: chr5:3491994-3492188 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 120, 86

Conread position: 292-529
Cow position: chr5:40039978-40039734 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 88, 235

Conread position: 292-547
Cow position: chr5:60126166-60126431 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 75, 108

Conread position: 292-556
Cow position: chr5:21964086-21964354 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 120, 14

Conread position: 292-560
Cow position: chr5:58144811-58144534 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 75, 212

Conread position: 292-563
Cow position: chr5:56820467-56820190 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 75, 35

Conread position: 292-584
Cow position: chr5:47547924-47547631 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 75, 21

Conread position: 292-591
Cow position: chr5:64137044-64137355 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 67, 202

Conread position: 292-593
Cow position: chr5:65601253-65601558 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 89, 171

Conread position: 292-602
Cow position: chr5:36855005-36855316 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 118, 69

Conread position: 292-605
Cow position: chr5:3771639-3771959 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 75, 97

Conread position: 292-605
Cow position: chr5:71494609-71494934 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 20

Conread position: 292-611
Cow position: chr5:17063301-17062962 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 279

Conread position: 292-612
Cow position: chr5:59326036-59325722 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 122, 77

Conread position: 292-613
Cow position: chr5:7044918-7044584 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 22

Conread position: 292-613
Cow position: chr5:41164881-41165209 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 108

Conread position: 292-613
Cow position: chr5:46323019-46322682 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 229
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 90, 108

Conread position: 292-614
Cow position: chr5:8821219-8820891 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 113

Conread position: 292-614
Cow position: chr5:15722261-15721952 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 120, 11

Conread position: 292-614
Cow position: chr5:16025668-16025346 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 69, 210

Conread position: 292-614
Cow position: chr5:17999702-17999375 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 75, 197

Conread position: 292-614
Cow position: chr5:24996431-24996101 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 23

Conread position: 292-614
Cow position: chr5:34300719-34301038 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 120, 52

Conread position: 292-614
Cow position: chr5:35969335-35969654 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 141

Conread position: 292-614
Cow position: chr5:37646758-37646422 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 105

Conread position: 292-614
Cow position: chr5:67243718-67244040 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 87, 146

Conread position: 294-614
Cow position: chr5:32339181-32338843 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 237
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 75, 213

Conread position: 294-614
Cow position: chr5:62142465-62142798 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 147

Conread position: 296-614
Cow position: chr5:47696654-47696328 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 61, 22

Conread position: 299-612
Cow position: chr5:56518410-56518102 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 68, 169

Conread position: 301-614
Cow position: chr5:57575567-57575895 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 274

Conread position: 302-614
Cow position: chr5:69731320-69731622 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 110, 59

Conread position: 306-614
Cow position: chr5:22643411-22643110 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 55, 130

Conread position: 307-452
Cow position: chr5:50870349-50870503 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 310-593
Cow position: chr5:52040509-52040222 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 61, 83

Conread position: 315-567
Cow position: chr5:6670382-6670118 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 60, 135

Conread position: 316-613
Cow position: chr5:37808848-37808542 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 68

Conread position: 316-614
Cow position: chr5:34624785-34625082 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 45, 100

Conread position: 317-610
Cow position: chr5:47323268-47323580 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 189

Conread position: 320-605
Cow position: chr5:55232973-55232701 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 74

Conread position: 321-612
Cow position: chr5:65136105-65136383 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 29, 94

Conread position: 321-614
Cow position: chr5:44028480-44028185 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 142

Conread position: 330-609
Cow position: chr5:41010166-41009887 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 31, 203

Conread position: 330-614
Cow position: chr5:56317125-56317411 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 191
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 110

Conread position: 334-614
Cow position: chr5:30950085-30949793 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 33, 173

Conread position: 339-600
Cow position: chr5:46426011-46425747 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 28, 132

Conread position: 340-614
Cow position: chr5:54060114-54060398 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 195

Conread position: 342-613
Cow position: chr5:20422331-20422072 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 13

Conread position: 343-602
Cow position: chr5:17555176-17554920 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 115, 9

Conread position: 346-614
Cow position: chr5:42050403-42050674 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 8

Conread position: 348-590
Cow position: chr5:63865649-63865893 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 64, 6

Conread position: 349-605
Cow position: chr5:35459445-35459180 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 179
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 31, 210

Conread position: 360-610
Cow position: chr5:44447005-44446747 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 140

Conread position: 363-574
Cow position: chr5:991332-991546 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 49, 105

Conread position: 363-605
Cow position: chr5:65883910-65883659 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 136

Conread position: 363-611
Cow position: chr5:18288995-18289241 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 140

Conread position: 363-612
Cow position: chr5:12673594-12673358 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 18

Conread position: 364-614
Cow position: chr5:22666960-22667193 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 84

Conread position: 365-537
Cow position: chr5:50972398-50972576 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 116

Conread position: 365-614
Cow position: chr5:67540335-67540079 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 172
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 47, 200

Conread position: 367-614
Cow position: chr5:44726456-44726212 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 50, 101

Conread position: 369-614
Cow position: chr5:49474670-49474423 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 14

Conread position: 371-605
Cow position: chr5:56680121-56680369 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 109

Conread position: 375-557
Cow position: chr5:50799418-50799600 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 86

Conread position: 378-605
Cow position: chr5:49440991-49440758 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 39, 186

Conread position: 386-614
Cow position: chr5:13717682-13717448 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 111

Conread position: 386-614
Cow position: chr5:58446692-58446929 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 28, 121

Conread position: 386-614
Cow position: chr5:60016056-60016287 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 26, 118

Conread position: 387-614
Cow position: chr5:23678814-23678581 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 27, 178

Conread position: 387-614
Cow position: chr5:60183691-60183927 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 94

Conread position: 392-614
Cow position: chr5:62378686-62378902 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 89

Conread position: 393-614
Cow position: chr5:54375611-54375380 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 24, 108

Conread position: 400-612
Cow position: chr5:30232802-30233027 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 172

Conread position: 405-612
Cow position: chr5:55019204-55019412 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 86

Conread position: 412-614
Cow position: chr5:70270782-70270989 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 75, 44

Conread position: 413-611
Cow position: chr5:43402818-43403024 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 51, 146

Conread position: 431-614
Cow position: chr5:49342109-49341927 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 18

Conread position: 432-614
Cow position: chr5:59627037-59626850 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 134

Conread position: 440-614
Cow position: chr5:67118371-67118542 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 7

Show alignments to all cow chromosomes.