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Cow genome map

           
Conread name:
           
rthg20_o8.y1
        

               
Conread position:
               
2-421
               

               
Cow position:
               
chr29:2071939-2071541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
276, 104
               

               
Conread position:
               
31-412
               

               
Cow position:
               
chr29:20178472-20178112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
239, 75
               

               
Conread position:
               
42-411
               

               
Cow position:
               
chr29:43328306-43328665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 64
               

               
Conread position:
               
46-311
               

               
Cow position:
               
chr29:22948989-22948738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
46-397
               

               
Cow position:
               
chr29:10653012-10653349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
46-411
               

               
Cow position:
               
chr29:32655767-32655408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
47-268
               

               
Cow position:
               
chr29:1582951-1582744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
47-288
               

               
Cow position:
               
chr29:29066101-29066325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 32
               

               
Conread position:
               
47-311
               

               
Cow position:
               
chr29:18748907-18748659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
224, 52
               

               
Conread position:
               
47-312
               

               
Cow position:
               
chr29:41850144-41849886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
47-320
               

               
Cow position:
               
chr29:15944243-15944504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
47-320
               

               
Cow position:
               
chr29:19756122-19756378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr29:2188675-2188405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
60, 121
               

               
Conread position:
               
47-344
               

               
Cow position:
               
chr29:961594-961880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
99, 24
               

               
Conread position:
               
47-345
               

               
Cow position:
               
chr29:5977447-5977156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
47-353
               

               
Cow position:
               
chr29:7408216-7407923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
47-353
               

               
Cow position:
               
chr29:20674134-20673835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
99, 59
               

               
Conread position:
               
47-362
               

               
Cow position:
               
chr29:19125034-19125317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
288, 59
               

               
Conread position:
               
47-371
               

               
Cow position:
               
chr29:2415133-2414833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
218, 29
               

               
Conread position:
               
47-371
               

               
Cow position:
               
chr29:12611003-12611319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
225, 59
               

               
Conread position:
               
47-372
               

               
Cow position:
               
chr29:1933886-1933571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
47-377
               

               
Cow position:
               
chr29:21933452-21933126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
47-378
               

               
Cow position:
               
chr29:37785512-37785184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr29:20933380-20933700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
47-387
               

               
Cow position:
               
chr29:8125919-8125591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-388
               

               
Cow position:
               
chr29:40852579-40852926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
55, 81
               

               
Conread position:
               
47-394
               

               
Cow position:
               
chr29:31926616-31926285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
106, 57
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr29:40892040-40891686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr29:43009438-43009074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
47-401
               

               
Cow position:
               
chr29:2589225-2588879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
47-407
               

               
Cow position:
               
chr29:17607090-17607435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 78
               

               
Conread position:
               
47-407
               

               
Cow position:
               
chr29:35501971-35501637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr29:4480500-4480152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 57
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr29:10058853-10058516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr29:11136214-11135875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
290, 59
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr29:26616062-26615701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr29:40117245-40117591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 41
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:1325115-1325464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:2744598-2744246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
107, 59
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:5892524-5892866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 50
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:8190805-8190445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
59, 202
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:24578526-24578884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 209
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:32963214-32963570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:35291772-35292113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:36530538-36530888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr29:41811900-41811566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
290, 46
               

               
Conread position:
               
47-415
               

               
Cow position:
               
chr29:26017837-26017481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-417
               

               
Cow position:
               
chr29:45005942-45005599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
289, 60
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr29:649942-650309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr29:17131943-17131589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 60
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr29:22935958-22936300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr29:87339-86981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 33
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr29:9911836-9912206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
69, 59
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr29:12005090-12004732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr29:40096639-40096998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
226, 59
               

               
Conread position:
               
47-423
               

               
Cow position:
               
chr29:6925696-6926041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-423
               

               
Cow position:
               
chr29:36216793-36217147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
47-435
               

               
Cow position:
               
chr29:7865889-7865507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
225, 59
               

               
Conread position:
               
47-437
               

               
Cow position:
               
chr29:9686335-9685958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
47-445
               

               
Cow position:
               
chr29:4875229-4874827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
47-445
               

               
Cow position:
               
chr29:11398253-11397874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
47-447
               

               
Cow position:
               
chr29:24952360-24952747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 60
               

               
Conread position:
               
47-518
               

               
Cow position:
               
chr29:16609414-16609851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
47-520
               

               
Cow position:
               
chr29:19338634-19339106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 128
               

               
Conread position:
               
48-370
               

               
Cow position:
               
chr29:36586255-36586560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
287, 57
               

               
Conread position:
               
48-397
               

               
Cow position:
               
chr29:28195841-28195508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 49
               

               
Conread position:
               
48-401
               

               
Cow position:
               
chr29:29974719-29975049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
48-411
               

               
Cow position:
               
chr29:35484919-35485267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 78
               

               
Conread position:
               
48-421
               

               
Cow position:
               
chr29:23874132-23874490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
49-270
               

               
Cow position:
               
chr29:29632261-29632052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
49-313
               

               
Cow position:
               
chr29:686515-686262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
49-333
               

               
Cow position:
               
chr29:28637385-28637118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
231, 48
               

               
Conread position:
               
49-333
               

               
Cow position:
               
chr29:30028755-30028482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
49-347
               

               
Cow position:
               
chr29:45650662-45650384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
49-377
               

               
Cow position:
               
chr29:20626253-20626562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
223, 55
               

               
Conread position:
               
49-391
               

               
Cow position:
               
chr29:11684681-11685008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
49-394
               

               
Cow position:
               
chr29:4327171-4327496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
49-394
               

               
Cow position:
               
chr29:18781542-18781868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
49-394
               

               
Cow position:
               
chr29:38581645-38581977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
177, 55
               

               
Conread position:
               
49-400
               

               
Cow position:
               
chr29:24345788-24345437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
49-401
               

               
Cow position:
               
chr29:7041157-7040837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr29:20429293-20428958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
229, 48
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr29:19398859-19399211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
223, 57
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr29:9638636-9638299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr29:27833663-27834010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr29:34745978-34745637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr29:40656364-40656718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
229, 55
               

               
Conread position:
               
49-418
               

               
Cow position:
               
chr29:16035489-16035129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
49-418
               

               
Cow position:
               
chr29:17409010-17409364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
136, 76
               

               
Conread position:
               
49-421
               

               
Cow position:
               
chr29:13590035-13589671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
202, 57
               

               
Conread position:
               
49-441
               

               
Cow position:
               
chr29:44902026-44901653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
49-516
               

               
Cow position:
               
chr29:42406339-42406794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
232, 56
               

               
Conread position:
               
50-332
               

               
Cow position:
               
chr29:20255073-20255344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
222, 56
               

               
Conread position:
               
50-364
               

               
Cow position:
               
chr29:14207345-14207040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
222, 56
               

               
Conread position:
               
50-371
               

               
Cow position:
               
chr29:4201796-4202108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
222, 55
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr29:35630736-35630422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
50-388
               

               
Cow position:
               
chr29:35281180-35281496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
50-427
               

               
Cow position:
               
chr29:8935162-8935520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
50-455
               

               
Cow position:
               
chr29:16657368-16657759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
215, 57
               

               
Conread position:
               
52-411
               

               
Cow position:
               
chr29:29056862-29057200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
53-320
               

               
Cow position:
               
chr29:38910324-38910068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
53-333
               

               
Cow position:
               
chr29:38247065-38246800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
244, 51
               

               
Conread position:
               
53-387
               

               
Cow position:
               
chr29:23119697-23119372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
53-411
               

               
Cow position:
               
chr29:39567366-39567707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
53-421
               

               
Cow position:
               
chr29:13372346-13372694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
282, 50
               

               
Conread position:
               
53-421
               

               
Cow position:
               
chr29:32521543-32521904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
210, 57
               

               
Conread position:
               
53-424
               

               
Cow position:
               
chr29:32290282-32290642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
54-410
               

               
Cow position:
               
chr29:15738663-15738322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
55-409
               

               
Cow position:
               
chr29:9709381-9709714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
279, 50
               

               
Conread position:
               
56-370
               

               
Cow position:
               
chr29:8630391-8630096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
56-409
               

               
Cow position:
               
chr29:17109655-17109979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
56-520
               

               
Cow position:
               
chr29:4328117-4328554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
60-401
               

               
Cow position:
               
chr29:10456865-10456551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
62-400
               

               
Cow position:
               
chr29:19508635-19508964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
149, 45
               

               
Conread position:
               
63-331
               

               
Cow position:
               
chr29:24650675-24650418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
209, 43
               

               
Conread position:
               
64-411
               

               
Cow position:
               
chr29:4625302-4624975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
65-518
               

               
Cow position:
               
chr29:8164171-8163726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
67-401
               

               
Cow position:
               
chr29:6775296-6774984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
67-434
               

               
Cow position:
               
chr29:21534996-21534626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
68-397
               

               
Cow position:
               
chr29:26734728-26735036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
72-307
               

               
Cow position:
               
chr29:6813131-6813362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
73-328
               

               
Cow position:
               
chr29:13615949-13615698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
73-421
               

               
Cow position:
               
chr29:35797579-35797916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
75-518
               

               
Cow position:
               
chr29:2263332-2262892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
77-425
               

               
Cow position:
               
chr29:22162553-22162215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr29:2984599-2984911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
175, 57
               

               
Conread position:
               
101-386
               

               
Cow position:
               
chr29:23844545-23844834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 70
               

               
Conread position:
               
104-397
               

               
Cow position:
               
chr29:11696252-11696537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
106-411
               

               
Cow position:
               
chr29:2522300-2522586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
106-518
               

               
Cow position:
               
chr29:25333732-25333358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
108-411
               

               
Cow position:
               
chr29:8669079-8669387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
108-411
               

               
Cow position:
               
chr29:29769621-29769330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
108-411
               

               
Cow position:
               
chr29:40165965-40166265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr29:12679879-12680213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
110-438
               

               
Cow position:
               
chr29:26329944-26330254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
115-347
               

               
Cow position:
               
chr29:5919594-5919363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
115-411
               

               
Cow position:
               
chr29:26986672-26986951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
231, 67
               

               
Conread position:
               
115-421
               

               
Cow position:
               
chr29:732353-732651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 55
               

               
Conread position:
               
115-431
               

               
Cow position:
               
chr29:18072660-18072985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
116-294
               

               
Cow position:
               
chr29:36243071-36243249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 65
               

               
Conread position:
               
116-407
               

               
Cow position:
               
chr29:42848959-42849242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
116-412
               

               
Cow position:
               
chr29:26778616-26778905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
118-419
               

               
Cow position:
               
chr29:5948053-5947775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
119-520
               

               
Cow position:
               
chr29:21000376-21000781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
120-319
               

               
Cow position:
               
chr29:4691950-4691748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
120-320
               

               
Cow position:
               
chr29:41076292-41076092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
120-332
               

               
Cow position:
               
chr29:26130519-26130725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
120-349
               

               
Cow position:
               
chr29:4065824-4066047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
120-366
               

               
Cow position:
               
chr29:9195388-9195144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
243, 49
               

               
Conread position:
               
120-370
               

               
Cow position:
               
chr29:17795156-17795404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 49
               

               
Conread position:
               
120-372
               

               
Cow position:
               
chr29:8415670-8415917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
120-387
               

               
Cow position:
               
chr29:4524593-4524853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
120-391
               

               
Cow position:
               
chr29:14501330-14501594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 33
               

               
Conread position:
               
120-402
               

               
Cow position:
               
chr29:479122-479396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
214, 41
               

               
Conread position:
               
120-402
               

               
Cow position:
               
chr29:39111572-39111299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
120-409
               

               
Cow position:
               
chr29:4120582-4120873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
153, 43
               

               
Conread position:
               
120-409
               

               
Cow position:
               
chr29:26771177-26771457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
215, 47
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr29:356062-356342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr29:699873-699594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
158, 20
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr29:19762008-19762292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 48
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr29:28775718-28775438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 47
               

               
Conread position:
               
120-420
               

               
Cow position:
               
chr29:6844893-6844604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
155, 46
               

               
Conread position:
               
120-421
               

               
Cow position:
               
chr29:41747180-41747478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
120-445
               

               
Cow position:
               
chr29:14112108-14112437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
120-516
               

               
Cow position:
               
chr29:28868367-28868744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
120-518
               

               
Cow position:
               
chr29:12309733-12310111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
155, 41
               

               
Conread position:
               
120-518
               

               
Cow position:
               
chr29:18878765-18878378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
120-518
               

               
Cow position:
               
chr29:43252951-43252568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
157, 46
               

               
Conread position:
               
121-409
               

               
Cow position:
               
chr29:26673166-26672892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr29:4194384-4194078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
121-421
               

               
Cow position:
               
chr29:4367458-4367756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
157, 41
               

               
Conread position:
               
121-421
               

               
Cow position:
               
chr29:31928716-31929019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
121-428
               

               
Cow position:
               
chr29:26334652-26334348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
122-402
               

               
Cow position:
               
chr29:5099024-5098754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
122-411
               

               
Cow position:
               
chr29:18212244-18211973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
122-432
               

               
Cow position:
               
chr29:12451110-12451422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
133, 40
               

               
Conread position:
               
123-419
               

               
Cow position:
               
chr29:44378678-44378384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
155, 12
               

               
Conread position:
               
125-288
               

               
Cow position:
               
chr29:21665711-21665869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
125-347
               

               
Cow position:
               
chr29:19389227-19389446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
125-352
               

               
Cow position:
               
chr29:4804974-4805196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
125-370
               

               
Cow position:
               
chr29:21924951-21925192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
172, 37
               

               
Conread position:
               
125-370
               

               
Cow position:
               
chr29:44233208-44232969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
125-387
               

               
Cow position:
               
chr29:3395851-3396105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
125-402
               

               
Cow position:
               
chr29:42364273-42364004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
125-402
               

               
Cow position:
               
chr29:43312054-43311780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
237, 41
               

               
Conread position:
               
125-408
               

               
Cow position:
               
chr29:35738529-35738254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
125-411
               

               
Cow position:
               
chr29:94804-94536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
146, 28
               

               
Conread position:
               
125-421
               

               
Cow position:
               
chr29:17364-17077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
125-427
               

               
Cow position:
               
chr29:14097391-14097098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
125-439
               

               
Cow position:
               
chr29:37599463-37599163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
153, 38
               

               
Conread position:
               
125-453
               

               
Cow position:
               
chr29:2623739-2623415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr29:9139150-9139357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
126-345
               

               
Cow position:
               
chr29:16756797-16757015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
126-349
               

               
Cow position:
               
chr29:32767778-32767561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
126-411
               

               
Cow position:
               
chr29:22069005-22068719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
155, 30
               

               
Conread position:
               
126-432
               

               
Cow position:
               
chr29:26298724-26299016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
109, 38
               

               
Conread position:
               
127-367
               

               
Cow position:
               
chr29:18735900-18735663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
127-421
               

               
Cow position:
               
chr29:12784212-12783930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
128-340
               

               
Cow position:
               
chr29:44135717-44135508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr29:8926715-8926440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
128-445
               

               
Cow position:
               
chr29:17222152-17222465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
130-385
               

               
Cow position:
               
chr29:585028-585271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
205, 33
               

               
Conread position:
               
130-400
               

               
Cow position:
               
chr29:42886127-42886399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr29:31594368-31594106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
131-432
               

               
Cow position:
               
chr29:13553879-13554183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
132-387
               

               
Cow position:
               
chr29:35406046-35405792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
140, 29
               

               
Conread position:
               
132-411
               

               
Cow position:
               
chr29:1556680-1556952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
132-411
               

               
Cow position:
               
chr29:26725912-26726190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
133-366
               

               
Cow position:
               
chr29:11787541-11787776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
133-378
               

               
Cow position:
               
chr29:3502810-3503044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
201, 23
               

               
Conread position:
               
133-402
               

               
Cow position:
               
chr29:11562363-11562625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
136-409
               

               
Cow position:
               
chr29:23984212-23983936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
136-447
               

               
Cow position:
               
chr29:19792528-19792222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
137-409
               

               
Cow position:
               
chr29:25737664-25737395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
137-411
               

               
Cow position:
               
chr29:3502309-3502592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
137-411
               

               
Cow position:
               
chr29:41530603-41530871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
197, 29
               

               
Conread position:
               
141-411
               

               
Cow position:
               
chr29:37961220-37960953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr29:6286402-6286140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
146-310
               

               
Cow position:
               
chr29:13458821-13458980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
146-407
               

               
Cow position:
               
chr29:27858554-27858811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
146-410
               

               
Cow position:
               
chr29:13639604-13639347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
199, 17
               

               
Conread position:
               
147-344
               

               
Cow position:
               
chr29:19254062-19253864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
147-400
               

               
Cow position:
               
chr29:22778424-22778165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
8, 219
               

               
Conread position:
               
147-401
               

               
Cow position:
               
chr29:25474671-25474934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
147-409
               

               
Cow position:
               
chr29:22714964-22714704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 18
               

               
Conread position:
               
147-411
               

               
Cow position:
               
chr29:4520099-4520361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
187, 19
               

               
Conread position:
               
147-411
               

               
Cow position:
               
chr29:16309514-16309764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
188, 16
               

               
Conread position:
               
147-411
               

               
Cow position:
               
chr29:19949073-19949331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
188, 19
               

               
Conread position:
               
147-411
               

               
Cow position:
               
chr29:20903524-20903269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
188, 19
               

               
Conread position:
               
147-421
               

               
Cow position:
               
chr29:24119973-24119710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
183, 19
               

               
Conread position:
               
147-446
               

               
Cow position:
               
chr29:36183039-36183339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
148-399
               

               
Cow position:
               
chr29:24103784-24103530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 18
               

               
Conread position:
               
148-411
               

               
Cow position:
               
chr29:35459006-35458750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
174, 18
               

               
Conread position:
               
148-421
               

               
Cow position:
               
chr29:23697738-23698007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
148-443
               

               
Cow position:
               
chr29:11915581-11915865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
150-419
               

               
Cow position:
               
chr29:11704886-11705149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
153-401
               

               
Cow position:
               
chr29:22585638-22585390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
157-517
               

               
Cow position:
               
chr29:25267887-25268237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 179
               

               
Conread position:
               
158-421
               

               
Cow position:
               
chr29:14484773-14484507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 67
               

               
Conread position:
               
163-439
               

               
Cow position:
               
chr29:28446481-28446197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
164, 6
               

               
Conread position:
               
164-304
               

               
Cow position:
               
chr29:23155029-23155172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
164-368
               

               
Cow position:
               
chr29:3711165-3711371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 95
               

               
Conread position:
               
164-411
               

               
Cow position:
               
chr29:868551-868796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
164-411
               

               
Cow position:
               
chr29:39642955-39643197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
164-455
               

               
Cow position:
               
chr29:19428442-19428722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
168-387
               

               
Cow position:
               
chr29:8338717-8338937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
104, 164
               

               
Conread position:
               
168-411
               

               
Cow position:
               
chr29:463871-463633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
167, 60
               

               
Conread position:
               
168-496
               

               
Cow position:
               
chr29:5109428-5109103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 224
               

               
Conread position:
               
169-360
               

               
Cow position:
               
chr29:8906304-8906497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 149
               

               
Conread position:
               
170-411
               

               
Cow position:
               
chr29:28166433-28166197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
171-423
               

               
Cow position:
               
chr29:30440711-30440967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 46
               

               
Conread position:
               
174-425
               

               
Cow position:
               
chr29:24080260-24080011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 161
               

               
Conread position:
               
177-386
               

               
Cow position:
               
chr29:5677576-5677785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 133
               

               
Conread position:
               
177-421
               

               
Cow position:
               
chr29:6337454-6337693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
178-419
               

               
Cow position:
               
chr29:41364902-41365141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
182-421
               

               
Cow position:
               
chr29:38580772-38581010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 80
               

               
Conread position:
               
183-394
               

               
Cow position:
               
chr29:10818639-10818430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
154, 45
               

               
Conread position:
               
184-417
               

               
Cow position:
               
chr29:39329798-39329577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
184-421
               

               
Cow position:
               
chr29:22690018-22690255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 169
               

               
Conread position:
               
185-401
               

               
Cow position:
               
chr29:22613227-22613441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
149, 27
               

               
Conread position:
               
185-423
               

               
Cow position:
               
chr29:26654241-26654014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
93, 135
               

               
Conread position:
               
188-353
               

               
Cow position:
               
chr29:3100459-3100292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
188-408
               

               
Cow position:
               
chr29:26269870-26270086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
189-342
               

               
Cow position:
               
chr29:26508290-26508447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
189-444
               

               
Cow position:
               
chr29:26985028-26985278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 142
               

               
Conread position:
               
191-401
               

               
Cow position:
               
chr29:9718967-9718756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
144, 107
               

               
Conread position:
               
193-388
               

               
Cow position:
               
chr29:25091917-25092112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
160, 5
               

               
Conread position:
               
193-395
               

               
Cow position:
               
chr29:40763877-40763675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
193-401
               

               
Cow position:
               
chr29:26275421-26275621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
170, 72
               

               
Conread position:
               
193-402
               

               
Cow position:
               
chr29:30188533-30188325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
193-520
               

               
Cow position:
               
chr29:6870977-6870660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
143, 42
               

               
Conread position:
               
194-423
               

               
Cow position:
               
chr29:32211251-32211033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
141, 128
               

               
Conread position:
               
195-411
               

               
Cow position:
               
chr29:5186689-5186472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 87
               

               
Conread position:
               
205-402
               

               
Cow position:
               
chr29:1124470-1124667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 151
               

               
Conread position:
               
206-410
               

               
Cow position:
               
chr29:10235309-10235110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 46
               

               
Conread position:
               
206-413
               

               
Cow position:
               
chr29:43099925-43099722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
132, 40
               

               
Conread position:
               
212-411
               

               
Cow position:
               
chr29:12025650-12025446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
212-411
               

               
Cow position:
               
chr29:23244058-23243857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
7, 170
               

               
Conread position:
               
213-411
               

               
Cow position:
               
chr29:4334550-4334747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
7, 111
               

               
Conread position:
               
213-411
               

               
Cow position:
               
chr29:44682273-44682083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
216-402
               

               
Cow position:
               
chr29:27588752-27588935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 17
               

               
Conread position:
               
217-399
               

               
Cow position:
               
chr29:27826353-27826532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
217-421
               

               
Cow position:
               
chr29:1395427-1395627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
217-429
               

               
Cow position:
               
chr29:24252066-24252276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
217-518
               

               
Cow position:
               
chr29:40615694-40615394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
219-411
               

               
Cow position:
               
chr29:34773904-34773716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
116, 129
               

               
Conread position:
               
224-413
               

               
Cow position:
               
chr29:31674465-31674656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
111, 98
               

               
Conread position:
               
228-421
               

               
Cow position:
               
chr29:2055899-2056091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
229-402
               

               
Cow position:
               
chr29:45383965-45384139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
235-409
               

               
Cow position:
               
chr29:29314809-29314633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
250-408
               

               
Cow position:
               
chr29:18580154-18579992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 86
               

               
Conread position:
               
250-411
               

               
Cow position:
               
chr29:27329753-27329914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 106
               

               
Conread position:
               
260-401
               

               
Cow position:
               
chr29:34359109-34358967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 57
               
Show alignments to all cow chromosomes.