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Cow genome map

           
Conread name:
           
rthg20_o8.y1
        

               
Conread position:
               
24-421
               

               
Cow position:
               
chr3:49678756-49679140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
256, 28
               

               
Conread position:
               
30-364
               

               
Cow position:
               
chr3:31903473-31903160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
235, 76
               

               
Conread position:
               
31-427
               

               
Cow position:
               
chr3:80972990-80973365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
241, 31
               

               
Conread position:
               
42-421
               

               
Cow position:
               
chr3:79292482-79292837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 81
               

               
Conread position:
               
44-311
               

               
Cow position:
               
chr3:27553199-27553453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
44-330
               

               
Cow position:
               
chr3:51609450-51609740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
44-397
               

               
Cow position:
               
chr3:45312701-45313035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
230, 62
               

               
Conread position:
               
44-402
               

               
Cow position:
               
chr3:31501004-31501338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
46-315
               

               
Cow position:
               
chr3:38346854-38347107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
46-347
               

               
Cow position:
               
chr3:23277890-23277606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
46-353
               

               
Cow position:
               
chr3:34316327-34316015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 49
               

               
Conread position:
               
46-411
               

               
Cow position:
               
chr3:19708446-19708105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
235, 42
               

               
Conread position:
               
46-411
               

               
Cow position:
               
chr3:23169419-23169065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
46-411
               

               
Cow position:
               
chr3:69751050-69750711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 79
               

               
Conread position:
               
46-412
               

               
Cow position:
               
chr3:69962058-69961715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
46-419
               

               
Cow position:
               
chr3:13353011-13353372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 60
               

               
Conread position:
               
46-425
               

               
Cow position:
               
chr3:14552531-14552887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
107, 5
               

               
Conread position:
               
46-434
               

               
Cow position:
               
chr3:72018774-72019140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 80
               

               
Conread position:
               
47-263
               

               
Cow position:
               
chr3:2334937-2335138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
47-272
               

               
Cow position:
               
chr3:470778-470561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
47-272
               

               
Cow position:
               
chr3:37580672-37580453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 80
               

               
Conread position:
               
47-302
               

               
Cow position:
               
chr3:22908179-22907940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
171, 50
               

               
Conread position:
               
47-307
               

               
Cow position:
               
chr3:14280496-14280743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
227, 57
               

               
Conread position:
               
47-311
               

               
Cow position:
               
chr3:36729325-36729587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
47-311
               

               
Cow position:
               
chr3:40231585-40231836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
47-313
               

               
Cow position:
               
chr3:22716651-22716379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
59, 133
               

               
Conread position:
               
47-317
               

               
Cow position:
               
chr3:14717466-14717716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
217, 59
               

               
Conread position:
               
47-317
               

               
Cow position:
               
chr3:53222996-53222733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
47-318
               

               
Cow position:
               
chr3:8753116-8753374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
47-323
               

               
Cow position:
               
chr3:65019984-65020248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-325
               

               
Cow position:
               
chr3:34392470-34392183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
61, 135
               

               
Conread position:
               
47-329
               

               
Cow position:
               
chr3:42461352-42461619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
47-329
               

               
Cow position:
               
chr3:51255426-51255706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-330
               

               
Cow position:
               
chr3:6853851-6853586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
47-330
               

               
Cow position:
               
chr3:53538170-53538440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
47-333
               

               
Cow position:
               
chr3:16004332-16004068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
47-333
               

               
Cow position:
               
chr3:33327346-33327627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 99
               

               
Conread position:
               
47-340
               

               
Cow position:
               
chr3:43658064-43657778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 69
               

               
Conread position:
               
47-340
               

               
Cow position:
               
chr3:58383614-58383896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
47-344
               

               
Cow position:
               
chr3:2506827-2506542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-347
               

               
Cow position:
               
chr3:8716899-8717189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
229, 59
               

               
Conread position:
               
47-347
               

               
Cow position:
               
chr3:79902155-79902443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
47-353
               

               
Cow position:
               
chr3:20129599-20129888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
47-353
               

               
Cow position:
               
chr3:31056350-31056060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
47-353
               

               
Cow position:
               
chr3:31298505-31298210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
47-355
               

               
Cow position:
               
chr3:55117317-55117021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
229, 57
               

               
Conread position:
               
47-356
               

               
Cow position:
               
chr3:15057958-15057663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
47-357
               

               
Cow position:
               
chr3:79592236-79591938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
47-357
               

               
Cow position:
               
chr3:82359685-82359990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
47-360
               

               
Cow position:
               
chr3:25691382-25691704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
70, 128
               

               
Conread position:
               
47-360
               

               
Cow position:
               
chr3:79220501-79220803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
47-362
               

               
Cow position:
               
chr3:56125390-56125691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
47-362
               

               
Cow position:
               
chr3:59630848-59630549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-363
               

               
Cow position:
               
chr3:31419348-31419657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
47-365
               

               
Cow position:
               
chr3:26894323-26894617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
179, 50
               

               
Conread position:
               
47-367
               

               
Cow position:
               
chr3:25690445-25690747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
224, 42
               

               
Conread position:
               
47-368
               

               
Cow position:
               
chr3:48296363-48296668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
61, 78
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr3:61191265-61190952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
47-385
               

               
Cow position:
               
chr3:15662046-15661728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
231, 50
               

               
Conread position:
               
47-386
               

               
Cow position:
               
chr3:13117999-13118316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
288, 59
               

               
Conread position:
               
47-386
               

               
Cow position:
               
chr3:17695351-17695028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
47-386
               

               
Cow position:
               
chr3:53573098-53572778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
47-391
               

               
Cow position:
               
chr3:14263047-14263376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
47-391
               

               
Cow position:
               
chr3:17952308-17952637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-391
               

               
Cow position:
               
chr3:21341311-21340979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
47-393
               

               
Cow position:
               
chr3:78946204-78945850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
47-397
               

               
Cow position:
               
chr3:2903646-2903308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 84
               

               
Conread position:
               
47-399
               

               
Cow position:
               
chr3:77496470-77496816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 41
               

               
Conread position:
               
47-399
               

               
Cow position:
               
chr3:81371308-81371635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr3:29887772-29887433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
47-401
               

               
Cow position:
               
chr3:10958573-10958251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
287, 50
               

               
Conread position:
               
47-401
               

               
Cow position:
               
chr3:13899801-13899458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
47-401
               

               
Cow position:
               
chr3:27285881-27286218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
47-401
               

               
Cow position:
               
chr3:43528585-43528247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-401
               

               
Cow position:
               
chr3:53593047-53592700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
47-402
               

               
Cow position:
               
chr3:21302779-21302459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
47-402
               

               
Cow position:
               
chr3:50768327-50768669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 51
               

               
Conread position:
               
47-408
               

               
Cow position:
               
chr3:17937199-17936843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 119
               

               
Conread position:
               
47-408
               

               
Cow position:
               
chr3:31047290-31046955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
293, 59
               

               
Conread position:
               
47-408
               

               
Cow position:
               
chr3:57554193-57553852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr3:10346999-10347351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 51
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr3:45647307-45647677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr3:48362735-48363073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
47-410
               

               
Cow position:
               
chr3:7331492-7331125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
47-410
               

               
Cow position:
               
chr3:7338125-7337784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:5101108-5100773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:9641200-9641566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:9843230-9843586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 59
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:15954424-15954086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:16752595-16752259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:18066786-18067140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 55
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:18459868-18459529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:20802976-20802621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
174, 50
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:22089630-22089278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
234, 58
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:31206525-31206875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:34270586-34270916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
198, 50
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:48241273-48241617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:56059439-56059810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:59001093-59000753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:61839943-61840278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
288, 60
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:65236671-65237023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:65413635-65413279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:70895699-70896043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:75710965-75711305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
287, 60
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:80082165-80081814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:80564613-80564965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 28
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr3:83816149-83815788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
47-413
               

               
Cow position:
               
chr3:27544682-27544334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
47-413
               

               
Cow position:
               
chr3:39171852-39171478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 125
               

               
Conread position:
               
47-414
               

               
Cow position:
               
chr3:57763859-57764224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 124
               

               
Conread position:
               
47-415
               

               
Cow position:
               
chr3:48530290-48530641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
216, 59
               

               
Conread position:
               
47-417
               

               
Cow position:
               
chr3:53149978-53150330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 59
               

               
Conread position:
               
47-417
               

               
Cow position:
               
chr3:66610186-66609836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr3:5851275-5850921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr3:13330142-13329768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 127
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr3:46350299-46350681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr3:68146172-68145835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
231, 30
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:5096835-5097215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:26920551-26920916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:33698377-33698739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 48
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:35852817-35852463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
288, 61
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:39328064-39328408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:49461285-49460918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
236, 57
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:49650033-49650396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 18
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:52017412-52017779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
194, 59
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:59473768-59474130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 75
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:71497494-71497130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:73708711-73709055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
288, 50
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr3:80053882-80053533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-423
               

               
Cow position:
               
chr3:55085538-55085161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-425
               

               
Cow position:
               
chr3:56160957-56161323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
214, 41
               

               
Conread position:
               
47-435
               

               
Cow position:
               
chr3:49218655-49218290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
47-436
               

               
Cow position:
               
chr3:40345052-40345433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
217, 59
               

               
Conread position:
               
47-438
               

               
Cow position:
               
chr3:38497596-38497964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
290, 60
               

               
Conread position:
               
47-438
               

               
Cow position:
               
chr3:53588740-53588355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
47-438
               

               
Cow position:
               
chr3:56637311-56637693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
290, 50
               

               
Conread position:
               
47-442
               

               
Cow position:
               
chr3:42177808-42178189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
47-443
               

               
Cow position:
               
chr3:49793065-49793426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
307, 53
               

               
Conread position:
               
47-444
               

               
Cow position:
               
chr3:50614297-50614675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
288, 59
               

               
Conread position:
               
47-455
               

               
Cow position:
               
chr3:18393732-18393356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
47-455
               

               
Cow position:
               
chr3:54434625-54435014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 50
               

               
Conread position:
               
47-455
               

               
Cow position:
               
chr3:79884834-79884448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
47-518
               

               
Cow position:
               
chr3:2024820-2025279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
47-518
               

               
Cow position:
               
chr3:23735450-23735007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
47-520
               

               
Cow position:
               
chr3:54782359-54781921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 57
               

               
Conread position:
               
48-271
               

               
Cow position:
               
chr3:59179062-59179269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
48-284
               

               
Cow position:
               
chr3:71104486-71104717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
48-333
               

               
Cow position:
               
chr3:28635076-28634802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
230, 58
               

               
Conread position:
               
48-411
               

               
Cow position:
               
chr3:42584185-42584542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
48-421
               

               
Cow position:
               
chr3:26219408-26219043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
48-446
               

               
Cow position:
               
chr3:26903770-26904140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
222, 58
               

               
Conread position:
               
48-512
               

               
Cow position:
               
chr3:62999345-62998917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
49-270
               

               
Cow position:
               
chr3:32363919-32363709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
49-307
               

               
Cow position:
               
chr3:79905258-79905022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
49-326
               

               
Cow position:
               
chr3:36657116-36656854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
97, 57
               

               
Conread position:
               
49-333
               

               
Cow position:
               
chr3:7360166-7359893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
223, 60
               

               
Conread position:
               
49-353
               

               
Cow position:
               
chr3:68302982-68303269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
49-378
               

               
Cow position:
               
chr3:34525990-34525673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
222, 54
               

               
Conread position:
               
49-385
               

               
Cow position:
               
chr3:75727935-75727611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
57, 76
               

               
Conread position:
               
49-387
               

               
Cow position:
               
chr3:24852933-24852610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
49-394
               

               
Cow position:
               
chr3:20663884-20663551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
49-399
               

               
Cow position:
               
chr3:4461834-4461497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
49-401
               

               
Cow position:
               
chr3:7408137-7408477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
49-401
               

               
Cow position:
               
chr3:41367329-41366991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
286, 57
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr3:2035952-2036289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr3:29807117-29807457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
103, 56
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr3:61678345-61678695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr3:81102154-81102497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
231, 57
               

               
Conread position:
               
49-408
               

               
Cow position:
               
chr3:54495717-54496064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 57
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr3:49119378-49119030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr3:72169066-72168721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
223, 46
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr3:83490732-83491083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:2674683-2675028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:7763321-7763655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
223, 19
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:31225105-31225435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:51014182-51013836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
223, 59
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:57577354-57577696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:61539451-61539805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:66708418-66708067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
104, 55
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr3:73759887-73759517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 138
               

               
Conread position:
               
49-415
               

               
Cow position:
               
chr3:14724952-14725307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
106, 19
               

               
Conread position:
               
49-415
               

               
Cow position:
               
chr3:64716677-64717030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
223, 57
               

               
Conread position:
               
49-418
               

               
Cow position:
               
chr3:14889122-14889480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
49-418
               

               
Cow position:
               
chr3:19884276-19884630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 57
               

               
Conread position:
               
49-419
               

               
Cow position:
               
chr3:28908549-28908195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
49-420
               

               
Cow position:
               
chr3:59691558-59691898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
99, 58
               

               
Conread position:
               
49-421
               

               
Cow position:
               
chr3:6442889-6443245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
49-421
               

               
Cow position:
               
chr3:8148008-8147659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
229, 38
               

               
Conread position:
               
49-421
               

               
Cow position:
               
chr3:12255134-12255489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
104, 51
               

               
Conread position:
               
49-423
               

               
Cow position:
               
chr3:2537911-2538270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
221, 48
               

               
Conread position:
               
49-425
               

               
Cow position:
               
chr3:16157339-16157688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
49-427
               

               
Cow position:
               
chr3:49230669-49231030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
49-445
               

               
Cow position:
               
chr3:49454886-49455272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
49-516
               

               
Cow position:
               
chr3:30179738-30180165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 57
               

               
Conread position:
               
49-517
               

               
Cow position:
               
chr3:26973813-26973361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
219, 59
               

               
Conread position:
               
50-357
               

               
Cow position:
               
chr3:50762775-50763072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
222, 34
               

               
Conread position:
               
50-367
               

               
Cow position:
               
chr3:46506595-46506897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
201, 56
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr3:67544219-67543902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
158, 57
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr3:8159610-8159919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
222, 56
               

               
Conread position:
               
50-408
               

               
Cow position:
               
chr3:44623256-44622890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
50-411
               

               
Cow position:
               
chr3:39065988-39066331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
50-411
               

               
Cow position:
               
chr3:49327601-49327943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 57
               

               
Conread position:
               
50-419
               

               
Cow position:
               
chr3:58206794-58206442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
50-422
               

               
Cow position:
               
chr3:45523920-45524276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
50-427
               

               
Cow position:
               
chr3:11385328-11385690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
96, 56
               

               
Conread position:
               
50-427
               

               
Cow position:
               
chr3:40827509-40827867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
222, 56
               

               
Conread position:
               
52-411
               

               
Cow position:
               
chr3:80071774-80072128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 72
               

               
Conread position:
               
52-412
               

               
Cow position:
               
chr3:2393315-2392962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
53-261
               

               
Cow position:
               
chr3:53508029-53508231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
53-284
               

               
Cow position:
               
chr3:58953956-58954173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
53-288
               

               
Cow position:
               
chr3:83698295-83698062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
53-289
               

               
Cow position:
               
chr3:84152973-84153203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr3:76411399-76411137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
53-329
               

               
Cow position:
               
chr3:48370789-48371053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
53-333
               

               
Cow position:
               
chr3:13274720-13274451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
219, 53
               

               
Conread position:
               
53-357
               

               
Cow position:
               
chr3:13577539-13577242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
53-364
               

               
Cow position:
               
chr3:16547334-16547632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
53-388
               

               
Cow position:
               
chr3:83474407-83474720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
53, 68
               

               
Conread position:
               
53-401
               

               
Cow position:
               
chr3:28675647-28675976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
53-407
               

               
Cow position:
               
chr3:78782632-78782953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
98, 51
               

               
Conread position:
               
53-411
               

               
Cow position:
               
chr3:70566080-70565739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
53-419
               

               
Cow position:
               
chr3:209980-210327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
113, 53
               

               
Conread position:
               
53-437
               

               
Cow position:
               
chr3:15387863-15388233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
219, 51
               

               
Conread position:
               
53-455
               

               
Cow position:
               
chr3:59648921-59649296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
225, 45
               

               
Conread position:
               
53-498
               

               
Cow position:
               
chr3:52148018-52147590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
232, 53
               

               
Conread position:
               
54-421
               

               
Cow position:
               
chr3:48852302-48851962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
55-288
               

               
Cow position:
               
chr3:44254775-44254551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
55-341
               

               
Cow position:
               
chr3:18184728-18185005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
55-341
               

               
Cow position:
               
chr3:61857156-61857434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
55-343
               

               
Cow position:
               
chr3:82473711-82473991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
55-357
               

               
Cow position:
               
chr3:58350238-58350534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
229, 51
               

               
Conread position:
               
55-387
               

               
Cow position:
               
chr3:6689654-6689975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
55-401
               

               
Cow position:
               
chr3:53384623-53384291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
93, 51
               

               
Conread position:
               
55-402
               

               
Cow position:
               
chr3:4332018-4332355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
55-411
               

               
Cow position:
               
chr3:55190087-55189755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 42
               

               
Conread position:
               
55-411
               

               
Cow position:
               
chr3:77271618-77271278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
55-421
               

               
Cow position:
               
chr3:11986991-11987337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
55-421
               

               
Cow position:
               
chr3:72390743-72391090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 51
               

               
Conread position:
               
55-518
               

               
Cow position:
               
chr3:64011156-64010734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
56-402
               

               
Cow position:
               
chr3:55272379-55272055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 42
               

               
Conread position:
               
56-411
               

               
Cow position:
               
chr3:81471436-81471097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
209, 41
               

               
Conread position:
               
56-421
               

               
Cow position:
               
chr3:7566755-7566409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
56-518
               

               
Cow position:
               
chr3:59451256-59451685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
220, 50
               

               
Conread position:
               
57-368
               

               
Cow position:
               
chr3:57479667-57479368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
215, 41
               

               
Conread position:
               
57-401
               

               
Cow position:
               
chr3:42489654-42489312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
240, 50
               

               
Conread position:
               
58-407
               

               
Cow position:
               
chr3:3738133-3738478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
59-419
               

               
Cow position:
               
chr3:15052278-15051940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
277, 47
               

               
Conread position:
               
62-400
               

               
Cow position:
               
chr3:42423664-42423340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
62-402
               

               
Cow position:
               
chr3:78076859-78077175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
62-411
               

               
Cow position:
               
chr3:67929599-67929261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr3:27274186-27274526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 170
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr3:4457406-4457100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
65-411
               

               
Cow position:
               
chr3:59101505-59101830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
65-419
               

               
Cow position:
               
chr3:58540878-58540522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 288
               

               
Conread position:
               
65-450
               

               
Cow position:
               
chr3:58969223-58968868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
201, 39
               

               
Conread position:
               
66-401
               

               
Cow position:
               
chr3:82657414-82657098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
66-411
               

               
Cow position:
               
chr3:31309691-31309355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
66-435
               

               
Cow position:
               
chr3:71246706-71247051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
210, 41
               

               
Conread position:
               
66-445
               

               
Cow position:
               
chr3:55970178-55970537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 38
               

               
Conread position:
               
67-401
               

               
Cow position:
               
chr3:2397111-2396790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
67-419
               

               
Cow position:
               
chr3:62321463-62321126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
184, 40
               

               
Conread position:
               
72-447
               

               
Cow position:
               
chr3:62292459-62292081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
75-378
               

               
Cow position:
               
chr3:42588019-42588326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
76-415
               

               
Cow position:
               
chr3:46900877-46901198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
188, 5
               

               
Conread position:
               
77-445
               

               
Cow position:
               
chr3:38691736-38691376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
79-401
               

               
Cow position:
               
chr3:57754796-57754487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
79-411
               

               
Cow position:
               
chr3:67704220-67704545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
79-421
               

               
Cow position:
               
chr3:28898544-28898215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
203, 27
               

               
Conread position:
               
79-421
               

               
Cow position:
               
chr3:53112852-53113183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
79-517
               

               
Cow position:
               
chr3:20256877-20257300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
88-411
               

               
Cow position:
               
chr3:29812926-29813243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
246, 78
               

               
Conread position:
               
89-425
               

               
Cow position:
               
chr3:70675911-70676237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
92-401
               

               
Cow position:
               
chr3:67744944-67744639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
95-411
               

               
Cow position:
               
chr3:73467310-73467630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
95-420
               

               
Cow position:
               
chr3:73394813-73395123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
176, 6
               

               
Conread position:
               
96-338
               

               
Cow position:
               
chr3:18854783-18855023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
96-423
               

               
Cow position:
               
chr3:64281247-64280922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
96-440
               

               
Cow position:
               
chr3:45534605-45534264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 20
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chr3:4031659-4031973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
98-413
               

               
Cow position:
               
chr3:76387918-76387599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
104, 18
               

               
Conread position:
               
99-425
               

               
Cow position:
               
chr3:75158060-75158373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr3:79112691-79112374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
5, 73
               

               
Conread position:
               
105-432
               

               
Cow position:
               
chr3:44861609-44861287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
105-452
               

               
Cow position:
               
chr3:19006364-19006692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
106-305
               

               
Cow position:
               
chr3:33693349-33693544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 61
               

               
Conread position:
               
106-371
               

               
Cow position:
               
chr3:54903267-54903536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
106-402
               

               
Cow position:
               
chr3:8393639-8393929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
106-402
               

               
Cow position:
               
chr3:71430517-71430214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
106-419
               

               
Cow position:
               
chr3:23092288-23091967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
106-420
               

               
Cow position:
               
chr3:42594956-42594645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
191, 70
               

               
Conread position:
               
106-421
               

               
Cow position:
               
chr3:14602013-14601703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
172, 61
               

               
Conread position:
               
106-518
               

               
Cow position:
               
chr3:66885340-66884949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
107-390
               

               
Cow position:
               
chr3:83455447-83455170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
237, 36
               

               
Conread position:
               
110-418
               

               
Cow position:
               
chr3:30417834-30418144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
162, 12
               

               
Conread position:
               
111-411
               

               
Cow position:
               
chr3:17456566-17456269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
113-411
               

               
Cow position:
               
chr3:77365586-77365291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
114-289
               

               
Cow position:
               
chr3:75164205-75164034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
114-353
               

               
Cow position:
               
chr3:59208524-59208757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
114-388
               

               
Cow position:
               
chr3:35283389-35283113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
115-410
               

               
Cow position:
               
chr3:60597258-60597542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
115-445
               

               
Cow position:
               
chr3:66292469-66292146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 48
               

               
Conread position:
               
116-327
               

               
Cow position:
               
chr3:83369032-83369232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
116-344
               

               
Cow position:
               
chr3:78443854-78443626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
116-407
               

               
Cow position:
               
chr3:82056406-82056118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
116, 12
               

               
Conread position:
               
116-409
               

               
Cow position:
               
chr3:15655438-15655149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
181, 27
               

               
Conread position:
               
118-402
               

               
Cow position:
               
chr3:2518825-2518549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
154, 43
               

               
Conread position:
               
118-420
               

               
Cow position:
               
chr3:74409207-74409493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
219, 40
               

               
Conread position:
               
119-401
               

               
Cow position:
               
chr3:24305192-24304926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 48
               

               
Conread position:
               
119-411
               

               
Cow position:
               
chr3:53046944-53046660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
120-305
               

               
Cow position:
               
chr3:58158750-58158569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
120-308
               

               
Cow position:
               
chr3:59392393-59392207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
151, 33
               

               
Conread position:
               
120-329
               

               
Cow position:
               
chr3:19198395-19198592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
120-329
               

               
Cow position:
               
chr3:61467323-61467525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
120-330
               

               
Cow position:
               
chr3:56704823-56704625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
120-333
               

               
Cow position:
               
chr3:14430111-14429900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
131, 47
               

               
Conread position:
               
120-333
               

               
Cow position:
               
chr3:79148562-79148347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
120-349
               

               
Cow position:
               
chr3:7678387-7678607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
161, 40
               

               
Conread position:
               
120-371
               

               
Cow position:
               
chr3:30531668-30531921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
120-386
               

               
Cow position:
               
chr3:23448415-23448163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
120-401
               

               
Cow position:
               
chr3:3164782-3164506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
120-401
               

               
Cow position:
               
chr3:77227032-77227314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
120-402
               

               
Cow position:
               
chr3:75479726-75479993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
120-409
               

               
Cow position:
               
chr3:11019832-11020115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
158, 43
               

               
Conread position:
               
120-409
               

               
Cow position:
               
chr3:73443373-73443092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
120-410
               

               
Cow position:
               
chr3:62789490-62789177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
120-410
               

               
Cow position:
               
chr3:80202321-80202603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr3:2216074-2216367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
150, 46
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr3:53270540-53270829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr3:53790830-53790537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 262
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr3:65800309-65800591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 26
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr3:74533062-74533348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr3:82460897-82461178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 33
               

               
Conread position:
               
120-413
               

               
Cow position:
               
chr3:62826909-62826619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
120-418
               

               
Cow position:
               
chr3:18874803-18874506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
120-419
               

               
Cow position:
               
chr3:8393060-8393358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
120-419
               

               
Cow position:
               
chr3:71161508-71161807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
120-421
               

               
Cow position:
               
chr3:72473621-72473923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
120-425
               

               
Cow position:
               
chr3:65968869-65969179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
158, 46
               

               
Conread position:
               
120-429
               

               
Cow position:
               
chr3:56582557-56582856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
120-432
               

               
Cow position:
               
chr3:45647851-45648154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
120-436
               

               
Cow position:
               
chr3:54959905-54960212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
153, 46
               

               
Conread position:
               
120-438
               

               
Cow position:
               
chr3:23111790-23111486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
217, 24
               

               
Conread position:
               
120-518
               

               
Cow position:
               
chr3:37041143-37041500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
206, 24
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr3:11640149-11640352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
121-392
               

               
Cow position:
               
chr3:65058417-65058680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
121-401
               

               
Cow position:
               
chr3:19789404-19789125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
121-401
               

               
Cow position:
               
chr3:59205956-59206232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
155, 41
               

               
Conread position:
               
121-401
               

               
Cow position:
               
chr3:81939966-81940247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
150, 43
               

               
Conread position:
               
121-402
               

               
Cow position:
               
chr3:59366262-59366545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
121-419
               

               
Cow position:
               
chr3:61278621-61278917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
121-420
               

               
Cow position:
               
chr3:59514826-59515111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
121-421
               

               
Cow position:
               
chr3:12712208-12711907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
122-393
               

               
Cow position:
               
chr3:49140331-49140058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
122-401
               

               
Cow position:
               
chr3:70333757-70333492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
156, 34
               

               
Conread position:
               
122-409
               

               
Cow position:
               
chr3:69417073-69416784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
122-411
               

               
Cow position:
               
chr3:59611000-59610719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
232, 31
               

               
Conread position:
               
122-415
               

               
Cow position:
               
chr3:68708285-68708005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
122-419
               

               
Cow position:
               
chr3:79094354-79094034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
122-421
               

               
Cow position:
               
chr3:8457373-8457663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
215, 14
               

               
Conread position:
               
123-371
               

               
Cow position:
               
chr3:55460784-55460542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
123-401
               

               
Cow position:
               
chr3:74600834-74601103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
123-411
               

               
Cow position:
               
chr3:81277987-81277699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
124-344
               

               
Cow position:
               
chr3:22170907-22171121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
125-320
               

               
Cow position:
               
chr3:51012814-51012623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
125-329
               

               
Cow position:
               
chr3:74699676-74699473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
125-330
               

               
Cow position:
               
chr3:26493505-26493302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
172, 37
               

               
Conread position:
               
125-386
               

               
Cow position:
               
chr3:46161126-46160869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
125-398
               

               
Cow position:
               
chr3:26682074-26681815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
210, 42
               

               
Conread position:
               
125-401
               

               
Cow position:
               
chr3:70401622-70401886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
210, 38
               

               
Conread position:
               
125-402
               

               
Cow position:
               
chr3:3032117-3032399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
125-407
               

               
Cow position:
               
chr3:39970153-39969868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
125-411
               

               
Cow position:
               
chr3:56650-56377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
125-411
               

               
Cow position:
               
chr3:15158760-15159030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
125-411
               

               
Cow position:
               
chr3:52863464-52863185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
125-411
               

               
Cow position:
               
chr3:80581390-80581661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
125-420
               

               
Cow position:
               
chr3:364500-364204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
125-420
               

               
Cow position:
               
chr3:53739472-53739178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
125-421
               

               
Cow position:
               
chr3:17957186-17957475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
125-423
               

               
Cow position:
               
chr3:23471749-23471451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
125-427
               

               
Cow position:
               
chr3:17895573-17895858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
125-432
               

               
Cow position:
               
chr3:54862705-54862392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
125-432
               

               
Cow position:
               
chr3:62883921-62884228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
212, 84
               

               
Conread position:
               
125-435
               

               
Cow position:
               
chr3:12668798-12669107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
125-438
               

               
Cow position:
               
chr3:81473723-81474036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
157, 127
               

               
Conread position:
               
125-444
               

               
Cow position:
               
chr3:20675160-20674845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 40
               

               
Conread position:
               
125-445
               

               
Cow position:
               
chr3:48629867-48629553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
125-446
               

               
Cow position:
               
chr3:52607897-52608213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 193
               

               
Conread position:
               
126-310
               

               
Cow position:
               
chr3:37486063-37485879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
126-318
               

               
Cow position:
               
chr3:18607088-18607279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
126-401
               

               
Cow position:
               
chr3:63861181-63860900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
126-401
               

               
Cow position:
               
chr3:74849318-74849062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
235, 40
               

               
Conread position:
               
126-402
               

               
Cow position:
               
chr3:26065721-26065989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
126-410
               

               
Cow position:
               
chr3:5416511-5416222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
126-415
               

               
Cow position:
               
chr3:3985050-3985330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
126-432
               

               
Cow position:
               
chr3:42563170-42563477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
126-445
               

               
Cow position:
               
chr3:75057394-75057094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
219, 27
               

               
Conread position:
               
126-518
               

               
Cow position:
               
chr3:38863833-38864207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
127-400
               

               
Cow position:
               
chr3:49731916-49731651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 39
               

               
Conread position:
               
127-411
               

               
Cow position:
               
chr3:50259147-50258861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr3:5374057-5374331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
206, 24
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr3:32584880-32585149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr3:68627953-68627688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr3:74233922-74234185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
207, 28
               

               
Conread position:
               
128-447
               

               
Cow position:
               
chr3:56704132-56703813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr3:15506172-15506448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr3:23408617-23408357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr3:31907424-31907140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
131-421
               

               
Cow position:
               
chr3:18458931-18458650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
131-421
               

               
Cow position:
               
chr3:59333500-59333779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
131-421
               

               
Cow position:
               
chr3:63179593-63179865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
131-421
               

               
Cow position:
               
chr3:73764468-73764187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
147, 13
               

               
Conread position:
               
131-516
               

               
Cow position:
               
chr3:74499949-74500340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
132-293
               

               
Cow position:
               
chr3:45333874-45333716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
132-382
               

               
Cow position:
               
chr3:18763620-18763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
132-445
               

               
Cow position:
               
chr3:54945851-54946161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
133-371
               

               
Cow position:
               
chr3:32399528-32399293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
133-423
               

               
Cow position:
               
chr3:525081-525358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
135-411
               

               
Cow position:
               
chr3:82020120-82019840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
136-410
               

               
Cow position:
               
chr3:84000342-84000611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
136-411
               

               
Cow position:
               
chr3:51578591-51578322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
136-421
               

               
Cow position:
               
chr3:13302126-13301842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
136-421
               

               
Cow position:
               
chr3:57624193-57624472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
136-423
               

               
Cow position:
               
chr3:70899630-70899903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
137-419
               

               
Cow position:
               
chr3:17451203-17450933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
141-333
               

               
Cow position:
               
chr3:55970960-55971148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
141-388
               

               
Cow position:
               
chr3:45307669-45307912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
144-425
               

               
Cow position:
               
chr3:74119704-74119421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
145-421
               

               
Cow position:
               
chr3:61171770-61171500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
145-435
               

               
Cow position:
               
chr3:61143833-61144124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
146-401
               

               
Cow position:
               
chr3:60933156-60933406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
146-409
               

               
Cow position:
               
chr3:2680252-2680513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
146-411
               

               
Cow position:
               
chr3:74621256-74620990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
147-359
               

               
Cow position:
               
chr3:53509944-53509736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
190, 16
               

               
Conread position:
               
147-393
               

               
Cow position:
               
chr3:8604272-8604037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
184, 19
               

               
Conread position:
               
147-395
               

               
Cow position:
               
chr3:4087424-4087176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
147-401
               

               
Cow position:
               
chr3:73590256-73590005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
188, 20
               

               
Conread position:
               
147-410
               

               
Cow position:
               
chr3:75080508-75080761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
188, 19
               

               
Conread position:
               
147-411
               

               
Cow position:
               
chr3:71237899-71238153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
188, 19
               

               
Conread position:
               
147-425
               

               
Cow position:
               
chr3:33253139-33252877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 20
               

               
Conread position:
               
148-353
               

               
Cow position:
               
chr3:74088431-74088226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 18
               

               
Conread position:
               
148-423
               

               
Cow position:
               
chr3:56476425-56476694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
187, 18
               

               
Conread position:
               
148-445
               

               
Cow position:
               
chr3:22820312-22820601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
149-343
               

               
Cow position:
               
chr3:23269846-23270031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
150-368
               

               
Cow position:
               
chr3:26970570-26970787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
186, 16
               

               
Conread position:
               
150-402
               

               
Cow position:
               
chr3:73460721-73460957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
206, 99
               

               
Conread position:
               
150-421
               

               
Cow position:
               
chr3:80740315-80740574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
185, 76
               

               
Conread position:
               
150-446
               

               
Cow position:
               
chr3:48578586-48578874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
194, 16
               

               
Conread position:
               
152-364
               

               
Cow position:
               
chr3:5045063-5044847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 14
               

               
Conread position:
               
152-364
               

               
Cow position:
               
chr3:35074427-35074637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
199, 12
               

               
Conread position:
               
152-421
               

               
Cow position:
               
chr3:49627619-49627352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
153-392
               

               
Cow position:
               
chr3:52650788-52650548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
153-409
               

               
Cow position:
               
chr3:13507209-13507465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
65, 93
               

               
Conread position:
               
155-421
               

               
Cow position:
               
chr3:55947325-55947592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
121, 11
               

               
Conread position:
               
156-411
               

               
Cow position:
               
chr3:44932257-44932515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
158-387
               

               
Cow position:
               
chr3:59885124-59885368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 215
               

               
Conread position:
               
161-407
               

               
Cow position:
               
chr3:16362985-16362740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
162-411
               

               
Cow position:
               
chr3:83201774-83201526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
5, 166
               

               
Conread position:
               
164-379
               

               
Cow position:
               
chr3:30055689-30055476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
164-401
               

               
Cow position:
               
chr3:53221771-53222001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
171, 45
               

               
Conread position:
               
164-411
               

               
Cow position:
               
chr3:43233260-43233505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
108, 169
               

               
Conread position:
               
164-436
               

               
Cow position:
               
chr3:63332567-63332834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
114, 188
               

               
Conread position:
               
164-439
               

               
Cow position:
               
chr3:25754793-25755049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
173, 85
               

               
Conread position:
               
164-445
               

               
Cow position:
               
chr3:52652317-52652050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
171, 45
               

               
Conread position:
               
164-507
               

               
Cow position:
               
chr3:23445133-23444818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
166-434
               

               
Cow position:
               
chr3:18217006-18216741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
171, 7
               

               
Conread position:
               
167-407
               

               
Cow position:
               
chr3:12705799-12705548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
167-411
               

               
Cow position:
               
chr3:55836069-55835822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
167-411
               

               
Cow position:
               
chr3:70334941-70334696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
169-329
               

               
Cow position:
               
chr3:4861451-4861605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
169-415
               

               
Cow position:
               
chr3:34937602-34937849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
166, 59
               

               
Conread position:
               
172-401
               

               
Cow position:
               
chr3:188624-188861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
177-402
               

               
Cow position:
               
chr3:15752858-15752641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
158, 32
               

               
Conread position:
               
177-402
               

               
Cow position:
               
chr3:17447838-17447622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
158, 55
               

               
Conread position:
               
177-421
               

               
Cow position:
               
chr3:55106673-55106431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
94, 177
               

               
Conread position:
               
181-399
               

               
Cow position:
               
chr3:56301574-56301363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
159, 150
               

               
Conread position:
               
181-401
               

               
Cow position:
               
chr3:21051064-21050848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
181-414
               

               
Cow position:
               
chr3:47524735-47524504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 37
               

               
Conread position:
               
183-410
               

               
Cow position:
               
chr3:78092734-78092513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
178, 107
               

               
Conread position:
               
184-411
               

               
Cow position:
               
chr3:26960818-26960589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
184-517
               

               
Cow position:
               
chr3:22734498-22734178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
185-415
               

               
Cow position:
               
chr3:68881338-68881113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 165
               

               
Conread position:
               
187-353
               

               
Cow position:
               
chr3:25944857-25945026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 160
               

               
Conread position:
               
188-411
               

               
Cow position:
               
chr3:15859890-15859667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
147, 106
               

               
Conread position:
               
188-411
               

               
Cow position:
               
chr3:61224954-61224745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
188-421
               

               
Cow position:
               
chr3:11711733-11711973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 233
               

               
Conread position:
               
189-419
               

               
Cow position:
               
chr3:72663243-72663477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 144
               

               
Conread position:
               
191-401
               

               
Cow position:
               
chr3:11063162-11063363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
191-421
               

               
Cow position:
               
chr3:4319494-4319719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
144, 83
               

               
Conread position:
               
191-421
               

               
Cow position:
               
chr3:35005561-35005784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
192-317
               

               
Cow position:
               
chr3:5082857-5082732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
192-411
               

               
Cow position:
               
chr3:25477597-25477805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
192-411
               

               
Cow position:
               
chr3:70609407-70609631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
143, 118
               

               
Conread position:
               
192-411
               

               
Cow position:
               
chr3:76713537-76713321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 50
               

               
Conread position:
               
192-421
               

               
Cow position:
               
chr3:78896433-78896655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
193-402
               

               
Cow position:
               
chr3:25059859-25060070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 169
               

               
Conread position:
               
193-411
               

               
Cow position:
               
chr3:74878804-74878590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
78, 18
               

               
Conread position:
               
194-411
               

               
Cow position:
               
chr3:21693728-21693950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
201-383
               

               
Cow position:
               
chr3:53095146-53094960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 148
               

               
Conread position:
               
201-445
               

               
Cow position:
               
chr3:27697189-27696948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 147
               

               
Conread position:
               
206-435
               

               
Cow position:
               
chr3:3637981-3638208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
72, 143
               

               
Conread position:
               
206-518
               

               
Cow position:
               
chr3:55712224-55712521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
68, 150
               

               
Conread position:
               
207-397
               

               
Cow position:
               
chr3:77665980-77665784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 64
               

               
Conread position:
               
207-407
               

               
Cow position:
               
chr3:41328246-41328440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
193, 13
               

               
Conread position:
               
211-425
               

               
Cow position:
               
chr3:60265441-60265239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
212-386
               

               
Cow position:
               
chr3:65380954-65381124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
212-411
               

               
Cow position:
               
chr3:59884272-59884070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
213-377
               

               
Cow position:
               
chr3:38828568-38828732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
213-401
               

               
Cow position:
               
chr3:74754130-74754314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
122, 93
               

               
Conread position:
               
213-411
               

               
Cow position:
               
chr3:20678032-20677840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
213-421
               

               
Cow position:
               
chr3:57760299-57760506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 147
               

               
Conread position:
               
215-425
               

               
Cow position:
               
chr3:70631822-70632029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
143, 59
               

               
Conread position:
               
216-411
               

               
Cow position:
               
chr3:8060932-8061128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
126, 116
               

               
Conread position:
               
216-411
               

               
Cow position:
               
chr3:74079834-74079637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
217-394
               

               
Cow position:
               
chr3:66884135-66883958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 138
               

               
Conread position:
               
217-409
               

               
Cow position:
               
chr3:23105560-23105365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
217-429
               

               
Cow position:
               
chr3:116003-116204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
217-455
               

               
Cow position:
               
chr3:57273872-57274099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
218-421
               

               
Cow position:
               
chr3:44101776-44101976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 132
               

               
Conread position:
               
222-364
               

               
Cow position:
               
chr3:68156552-68156688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
222-421
               

               
Cow position:
               
chr3:54374050-54373852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
222-450
               

               
Cow position:
               
chr3:63269036-63269258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
226-385
               

               
Cow position:
               
chr3:4082280-4082118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
226-402
               

               
Cow position:
               
chr3:22232837-22232660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
226-411
               

               
Cow position:
               
chr3:7940741-7940554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 163
               

               
Conread position:
               
226-411
               

               
Cow position:
               
chr3:75687624-75687438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 123
               

               
Conread position:
               
226-411
               

               
Cow position:
               
chr3:79271144-79270959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 125
               

               
Conread position:
               
226-421
               

               
Cow position:
               
chr3:67930367-67930175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
226-425
               

               
Cow position:
               
chr3:74502507-74502313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
226-518
               

               
Cow position:
               
chr3:22924593-22924294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 95
               

               
Conread position:
               
232-411
               

               
Cow position:
               
chr3:70762302-70762121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
103, 144
               

               
Conread position:
               
232-411
               

               
Cow position:
               
chr3:76922842-76922664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
103, 146
               

               
Conread position:
               
232-445
               

               
Cow position:
               
chr3:68586844-68587052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
235-369
               

               
Cow position:
               
chr3:36418642-36418510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
235-411
               

               
Cow position:
               
chr3:54506533-54506706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
235-421
               

               
Cow position:
               
chr3:62046486-62046672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
236-401
               

               
Cow position:
               
chr3:26874415-26874585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
236-411
               

               
Cow position:
               
chr3:55819572-55819757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
242-518
               

               
Cow position:
               
chr3:27109070-27108807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
270, 60
               

               
Conread position:
               
243-411
               

               
Cow position:
               
chr3:79196593-79196758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
245-386
               

               
Cow position:
               
chr3:34294451-34294308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
245-396
               

               
Cow position:
               
chr3:68616491-68616339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
90, 59
               

               
Conread position:
               
245-411
               

               
Cow position:
               
chr3:55109781-55109614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
245-421
               

               
Cow position:
               
chr3:30222019-30222199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
250-411
               

               
Cow position:
               
chr3:55177914-55177747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
256-401
               

               
Cow position:
               
chr3:19585706-19585853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
257-418
               

               
Cow position:
               
chr3:18056289-18056445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
258-411
               

               
Cow position:
               
chr3:46541981-46541830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
104, 89
               

               
Conread position:
               
267-408
               

               
Cow position:
               
chr3:75105229-75105087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
267-425
               

               
Cow position:
               
chr3:3883963-3883803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 151
               

               
Conread position:
               
268-411
               

               
Cow position:
               
chr3:1785385-1785246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
270-411
               

               
Cow position:
               
chr3:73237053-73237195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
271-407
               

               
Cow position:
               
chr3:18426840-18426712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
271-409
               

               
Cow position:
               
chr3:78093524-78093392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 79
               

               
Conread position:
               
275-518
               

               
Cow position:
               
chr3:28323046-28323298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
294-423
               

               
Cow position:
               
chr3:63177361-63177493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 125
               

               
Conread position:
               
298-518
               

               
Cow position:
               
chr3:15683300-15683071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
301-516
               

               
Cow position:
               
chr3:28496717-28496913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
36, 49
               
Show alignments to all cow chromosomes.