Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 1-196 |
| Cow position: | chr11:4063332-4063136 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 140 |
| Conread position: | 11-173 |
| Cow position: | chr11:23877838-23878005 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-184 |
| Cow position: | chr11:47759740-47759562 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 20, 144 |
| Conread position: | 11-191 |
| Cow position: | chr11:57627515-57627330 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 136 |
| Conread position: | 11-192 |
| Cow position: | chr11:44582792-44582606 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 11-192 |
| Cow position: | chr11:58134937-58135123 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr11:10847994-10848181 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 11-193 |
| Cow position: | chr11:38834892-38834705 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr11:41170152-41169965 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr11:61400521-61400334 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 144 |
| Conread position: | 11-193 |
| Cow position: | chr11:71330136-71330321 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 11-534 |
| Cow position: | chr11:4027017-4026471 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 127 |
| Conread position: | 13-193 |
| Cow position: | chr11:85393266-85393084 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 139 |
| Conread position: | 13-203 |
| Cow position: | chr11:31861446-31861637 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 13-522 |
| Cow position: | chr11:82123607-82123100 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 14-191 |
| Cow position: | chr11:1489592-1489418 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 18-201 |
| Cow position: | chr11:40775461-40775271 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 19-193 |
| Cow position: | chr11:26548067-26548241 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 23-193 |
| Cow position: | chr11:26124366-26124196 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 28-193 |
| Cow position: | chr11:29668043-29667877 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 48-193 |
| Cow position: | chr11:72310448-72310304 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 49-193 |
| Cow position: | chr11:44156660-44156517 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 164-582 |
| Cow position: | chr11:38834689-38834263 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 12 |
| Conread position: | 165-510 |
| Cow position: | chr11:14728299-14727941 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 188-509 |
| Cow position: | chr11:2727503-2727836 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 11, 170 |
| Conread position: | 188-534 |
| Cow position: | chr11:30123071-30122708 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 188-547 |
| Cow position: | chr11:1489375-1489018 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 188-550 |
| Cow position: | chr11:44582568-44582189 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 188-554 |
| Cow position: | chr11:9601547-9601173 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 197-533 |
| Cow position: | chr11:20575605-20575263 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 198-534 |
| Cow position: | chr11:66729874-66730223 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 166 |
| Conread position: | 198-547 |
| Cow position: | chr11:9156372-9156001 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 221 |
| Conread position: | 198-547 |
| Cow position: | chr11:24394092-24394465 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 335 |
| Conread position: | 198-550 |
| Cow position: | chr11:4269623-4269248 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 334 |
| Conread position: | 198-550 |
| Cow position: | chr11:10848229-10848605 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 335 |
| Conread position: | 198-550 |
| Cow position: | chr11:11988914-11989286 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 198-550 |
| Cow position: | chr11:12357636-12357258 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 337 |
| Conread position: | 198-550 |
| Cow position: | chr11:26124148-26123774 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 198-550 |
| Cow position: | chr11:29667827-29667453 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 333 |
| Conread position: | 198-550 |
| Cow position: | chr11:41169915-41169543 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 196 |
| Conread position: | 198-550 |
| Cow position: | chr11:58135175-58135547 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 220 |
| Conread position: | 198-550 |
| Cow position: | chr11:71330374-71330748 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 333 |
| Conread position: | 198-584 |
| Cow position: | chr11:23880809-23881218 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 204-533 |
| Cow position: | chr11:35504419-35504075 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 204-534 |
| Cow position: | chr11:26548302-26548662 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 335 |
| Conread position: | 204-539 |
| Cow position: | chr11:10869463-10869798 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 54, 123 |
| Conread position: | 212-517 |
| Cow position: | chr11:19063279-19062952 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 212-536 |
| Cow position: | chr11:3493787-3494129 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 212-536 |
| Cow position: | chr11:17546955-17547303 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 320 |
| Conread position: | 212-536 |
| Cow position: | chr11:67845773-67845431 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 118, 19 |
| Conread position: | 212-547 |
| Cow position: | chr11:47759488-47759130 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 63 |
| Conread position: | 212-550 |
| Cow position: | chr11:17106890-17106529 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 320 |
| Conread position: | 212-550 |
| Cow position: | chr11:44518072-44517711 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 115, 104 |
| Conread position: | 212-550 |
| Cow position: | chr11:63654540-63654181 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 22 |
| Conread position: | 213-532 |
| Cow position: | chr11:20733442-20733103 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 117, 61 |
| Conread position: | 215-540 |
| Cow position: | chr11:74424392-74424738 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 71 |
| Conread position: | 215-550 |
| Cow position: | chr11:85393022-85392681 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 216-529 |
| Cow position: | chr11:40775200-40774869 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 58 |
| Conread position: | 218-522 |
| Cow position: | chr11:28228967-28228643 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 112, 311 |
| Conread position: | 218-547 |
| Cow position: | chr11:21899044-21898695 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 219-583 |
| Cow position: | chr11:9168727-9168374 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 116, 53 |
| Conread position: | 230-534 |
| Cow position: | chr11:26070238-26069909 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 132 |
| Conread position: | 233-534 |
| Cow position: | chr11:9215958-9215657 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 124 |
| Conread position: | 280-510 |
| Cow position: | chr11:67154549-67154799 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 287-533 |
| Cow position: | chr11:18070070-18069810 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 301-550 |
| Cow position: | chr11:27657327-27657586 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 363-534 |
| Cow position: | chr11:21444413-21444598 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 45 |
| Conread position: | 364-534 |
| Cow position: | chr11:23249520-23249333 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 366-530 |
| Cow position: | chr11:26146246-26146070 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 12 |
Show alignments to all cow chromosomes.