Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 11-184 |
| Cow position: | chr14:48825768-48825950 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 11-190 |
| Cow position: | chr14:29775731-29775547 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 151 |
| Conread position: | 11-193 |
| Cow position: | chr14:9046061-9046248 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 11-193 |
| Cow position: | chr14:16919228-16919044 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 11-193 |
| Cow position: | chr14:17000573-17000386 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 152 |
| Conread position: | 11-193 |
| Cow position: | chr14:32447282-32447466 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 11-193 |
| Cow position: | chr14:50111278-50111462 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 11-534 |
| Cow position: | chr14:13462074-13462601 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 11-534 |
| Cow position: | chr14:44552372-44552918 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 11-550 |
| Cow position: | chr14:12610938-12611507 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 142 |
| Conread position: | 13-193 |
| Cow position: | chr14:22030952-22030773 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 13-480 |
| Cow position: | chr14:45189290-45188826 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 21-193 |
| Cow position: | chr14:5512325-5512497 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 23-194 |
| Cow position: | chr14:11153654-11153484 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 25-193 |
| Cow position: | chr14:7472861-7473030 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 126 |
| Conread position: | 28-193 |
| Cow position: | chr14:16272789-16272623 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr14:33677570-33677737 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 136 |
| Conread position: | 29-190 |
| Cow position: | chr14:13620643-13620481 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 40-191 |
| Cow position: | chr14:12899614-12899766 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 40-193 |
| Cow position: | chr14:190486-190641 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 54-201 |
| Cow position: | chr14:44581887-44582034 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-530 |
| Cow position: | chr14:16883153-16882781 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 166, 11 |
| Conread position: | 176-517 |
| Cow position: | chr14:13274310-13274668 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 72 |
| Conread position: | 180-510 |
| Cow position: | chr14:17490754-17490401 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 150, 39 |
| Conread position: | 188-517 |
| Cow position: | chr14:17760170-17759825 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 224 |
| Conread position: | 188-535 |
| Cow position: | chr14:44775327-44774964 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 188-550 |
| Cow position: | chr14:7473073-7473447 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 198-534 |
| Cow position: | chr14:13779660-13780031 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 82, 346 |
| Conread position: | 198-534 |
| Cow position: | chr14:44227100-44227456 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 198-550 |
| Cow position: | chr14:13863368-13863001 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 70 |
| Conread position: | 198-550 |
| Cow position: | chr14:17000337-16999961 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 335 |
| Conread position: | 198-551 |
| Cow position: | chr14:38147730-38148093 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 198-578 |
| Cow position: | chr14:11153430-11153025 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 335 |
| Conread position: | 199-534 |
| Cow position: | chr14:2295014-2295351 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 32 |
| Conread position: | 199-550 |
| Cow position: | chr14:45711000-45710633 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 204-546 |
| Cow position: | chr14:19327534-19327171 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 326 |
| Conread position: | 204-575 |
| Cow position: | chr14:30735897-30736290 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 209-534 |
| Cow position: | chr14:18105178-18105507 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 212-532 |
| Cow position: | chr14:9046312-9046656 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 95, 321 |
| Conread position: | 213-536 |
| Cow position: | chr14:50139298-50139647 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 321 |
| Conread position: | 215-550 |
| Cow position: | chr14:45081793-45082150 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 317 |
| Conread position: | 216-550 |
| Cow position: | chr14:46466424-46466763 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 229-550 |
| Cow position: | chr14:24996832-24996498 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 230-517 |
| Cow position: | chr14:40168978-40168673 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 113 |
| Conread position: | 252-530 |
| Cow position: | chr14:35385039-35384751 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 115 |
| Conread position: | 280-536 |
| Cow position: | chr14:23256551-23256281 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 282-517 |
| Cow position: | chr14:37455107-37454867 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 48, 118 |
| Conread position: | 290-550 |
| Cow position: | chr14:13579207-13579480 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 229 |
| Conread position: | 330-534 |
| Cow position: | chr14:32447819-32448042 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 198 |
| Conread position: | 336-550 |
| Cow position: | chr14:30666339-30666571 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 74 |
| Conread position: | 350-550 |
| Cow position: | chr14:28244795-28244580 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 174 |
Show alignments to all cow chromosomes.