Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 4-193 |
| Cow position: | chr15:35736270-35736464 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 11-193 |
| Cow position: | chr15:3260830-3260643 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 144 |
| Conread position: | 11-193 |
| Cow position: | chr15:4386248-4386435 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr15:4922636-4922824 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 145 |
| Conread position: | 11-193 |
| Cow position: | chr15:18577199-18577386 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 11-193 |
| Cow position: | chr15:21665258-21665071 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 11-193 |
| Cow position: | chr15:32493896-32493712 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 11-193 |
| Cow position: | chr15:36625782-36625596 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 21, 149 |
| Conread position: | 11-193 |
| Cow position: | chr15:53136732-53136545 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-200 |
| Cow position: | chr15:44070416-44070609 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 162 |
| Conread position: | 11-201 |
| Cow position: | chr15:4651846-4652035 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 11-207 |
| Cow position: | chr15:315368-315170 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 19-193 |
| Cow position: | chr15:35752817-35752643 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 28-188 |
| Cow position: | chr15:14581851-14581690 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 37-192 |
| Cow position: | chr15:51218124-51218278 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 39-189 |
| Cow position: | chr15:38981245-38981396 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 41-184 |
| Cow position: | chr15:6386818-6386677 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 48-190 |
| Cow position: | chr15:44829332-44829473 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 48-192 |
| Cow position: | chr15:6155412-6155269 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 48-193 |
| Cow position: | chr15:2077189-2077333 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 179-536 |
| Cow position: | chr15:50147781-50148161 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 151, 40 |
| Conread position: | 186-547 |
| Cow position: | chr15:4678968-4679355 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 349 |
| Conread position: | 188-513 |
| Cow position: | chr15:4915904-4916237 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 188-517 |
| Cow position: | chr15:2077370-2077724 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 188-534 |
| Cow position: | chr15:4950777-4951139 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 188-581 |
| Cow position: | chr15:17148837-17149247 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 196-550 |
| Cow position: | chr15:4672161-4672527 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 46 |
| Conread position: | 198-531 |
| Cow position: | chr15:53409639-53409992 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 73 |
| Conread position: | 198-532 |
| Cow position: | chr15:35752594-35752230 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 33 |
| Conread position: | 198-550 |
| Cow position: | chr15:15346388-15346014 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 73 |
| Conread position: | 198-580 |
| Cow position: | chr15:9430663-9431053 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 100 |
| Conread position: | 198-584 |
| Cow position: | chr15:4386484-4386881 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 198-584 |
| Cow position: | chr15:18577436-18577845 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 334 |
| Conread position: | 199-550 |
| Cow position: | chr15:5981071-5981442 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 217 |
| Conread position: | 200-501 |
| Cow position: | chr15:32479869-32479559 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 94, 48 |
| Conread position: | 202-550 |
| Cow position: | chr15:2013294-2013652 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 204-536 |
| Cow position: | chr15:7261338-7261685 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 70 |
| Conread position: | 205-550 |
| Cow position: | chr15:4962368-4962727 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 208-534 |
| Cow position: | chr15:53299204-53299547 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 210-522 |
| Cow position: | chr15:1238402-1238751 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 331 |
| Conread position: | 211-532 |
| Cow position: | chr15:4765922-4766267 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 211-550 |
| Cow position: | chr15:6553083-6552722 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 212-550 |
| Cow position: | chr15:1782975-1783336 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 212-550 |
| Cow position: | chr15:4197200-4197560 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 118, 319 |
| Conread position: | 212-550 |
| Cow position: | chr15:35646939-35646585 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 212-550 |
| Cow position: | chr15:50123196-50122838 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 118, 317 |
| Conread position: | 217-517 |
| Cow position: | chr15:8751147-8751464 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 218-580 |
| Cow position: | chr15:445358-445747 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 225-536 |
| Cow position: | chr15:24794574-24794904 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 227-544 |
| Cow position: | chr15:4823220-4823545 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 103, 119 |
| Conread position: | 230-536 |
| Cow position: | chr15:24295841-24296171 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 302 |
| Conread position: | 240-551 |
| Cow position: | chr15:329094-329431 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 90, 295 |
| Conread position: | 242-532 |
| Cow position: | chr15:9912462-9912156 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 283 |
| Conread position: | 243-534 |
| Cow position: | chr15:580199-580507 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 253 |
| Conread position: | 251-536 |
| Cow position: | chr15:31860442-31860128 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 79, 286 |
| Conread position: | 258-545 |
| Cow position: | chr15:7235031-7235345 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 277 |
| Conread position: | 281-541 |
| Cow position: | chr15:50056836-50057117 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 52, 174 |
| Conread position: | 282-550 |
| Cow position: | chr15:7892523-7892254 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 284-550 |
| Cow position: | chr15:44071398-44071694 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 255 |
| Conread position: | 286-510 |
| Cow position: | chr15:7938259-7938503 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 328-550 |
| Cow position: | chr15:18266920-18266682 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 329-550 |
| Cow position: | chr15:20411452-20411691 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 35, 198 |
| Conread position: | 364-550 |
| Cow position: | chr15:20361196-20360996 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 159 |
Show alignments to all cow chromosomes.