Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 11-182 |
| Cow position: | chr16:20202061-20202237 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 11-193 |
| Cow position: | chr16:5484876-5485063 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr16:15185217-15185404 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr16:27733646-27733466 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 11-201 |
| Cow position: | chr16:41162927-41162732 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 142 |
| Conread position: | 12-188 |
| Cow position: | chr16:1432333-1432518 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 27, 154 |
| Conread position: | 28-192 |
| Cow position: | chr16:25441793-25441959 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 28-192 |
| Cow position: | chr16:28470935-28470770 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr16:10438418-10438584 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr16:25457297-25457130 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 28-196 |
| Cow position: | chr16:43897109-43896941 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 39-193 |
| Cow position: | chr16:7676280-7676125 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 43-193 |
| Cow position: | chr16:23983480-23983629 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 47-206 |
| Cow position: | chr16:19151437-19151277 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 116 |
| Conread position: | 48-193 |
| Cow position: | chr16:2410778-2410634 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 127-532 |
| Cow position: | chr16:2238457-2238031 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 221 |
| Conread position: | 165-550 |
| Cow position: | chr16:5485079-5485480 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 11 |
| Conread position: | 165-550 |
| Cow position: | chr16:15185420-15185829 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 11 |
| Conread position: | 171-550 |
| Cow position: | chr16:49255863-49255480 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 8 |
| Conread position: | 188-517 |
| Cow position: | chr16:16270773-16270412 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 353 |
| Conread position: | 188-533 |
| Cow position: | chr16:23671066-23671440 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 188-534 |
| Cow position: | chr16:25441999-25442366 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 188-534 |
| Cow position: | chr16:40295806-40295425 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 356 |
| Conread position: | 188-549 |
| Cow position: | chr16:29047391-29047775 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 198-517 |
| Cow position: | chr16:8815724-8815383 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 215 |
| Conread position: | 198-521 |
| Cow position: | chr16:14665427-14665086 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 46 |
| Conread position: | 198-534 |
| Cow position: | chr16:26664133-26664491 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 108 |
| Conread position: | 198-535 |
| Cow position: | chr16:31591535-31591178 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 198-537 |
| Cow position: | chr16:10438632-10438996 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 335 |
| Conread position: | 198-542 |
| Cow position: | chr16:9209343-9209701 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 135, 351 |
| Conread position: | 198-550 |
| Cow position: | chr16:406658-406286 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 33 |
| Conread position: | 198-550 |
| Cow position: | chr16:3330318-3330690 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 331 |
| Conread position: | 198-550 |
| Cow position: | chr16:27714420-27714072 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 135, 33 |
| Conread position: | 200-517 |
| Cow position: | chr16:23808717-23809041 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 63 |
| Conread position: | 204-515 |
| Cow position: | chr16:49234245-49233915 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 211-535 |
| Cow position: | chr16:51084544-51084892 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 212-550 |
| Cow position: | chr16:28169965-28169594 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 215-550 |
| Cow position: | chr16:1432588-1432940 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 139 |
| Conread position: | 215-550 |
| Cow position: | chr16:2482739-2482383 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 215-550 |
| Cow position: | chr16:4478573-4478220 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 312 |
| Conread position: | 215-550 |
| Cow position: | chr16:27732983-27732631 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 219-530 |
| Cow position: | chr16:5890398-5890732 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 131 |
| Conread position: | 224-517 |
| Cow position: | chr16:9931153-9931454 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 224-544 |
| Cow position: | chr16:25001892-25001549 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 230-517 |
| Cow position: | chr16:25457061-25456759 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 262-541 |
| Cow position: | chr16:38023763-38024066 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 270 |
| Conread position: | 293-534 |
| Cow position: | chr16:28470599-28470335 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 37, 239 |
| Conread position: | 297-530 |
| Cow position: | chr16:25258304-25258554 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 318-550 |
| Cow position: | chr16:40557447-40557194 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 12, 212 |
| Conread position: | 348-534 |
| Cow position: | chr16:25933232-25933434 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 177 |
| Conread position: | 357-550 |
| Cow position: | chr16:32937068-32937273 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 363-534 |
| Cow position: | chr16:16228872-16229055 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 41, 158 |
Show alignments to all cow chromosomes.