Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 3-192 |
| Cow position: | chr2:65938090-65937895 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 10, 153 |
| Conread position: | 3-193 |
| Cow position: | chr2:5484628-5484441 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 11-190 |
| Cow position: | chr2:10732401-10732217 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 11-192 |
| Cow position: | chr2:11158747-11158562 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-192 |
| Cow position: | chr2:12223940-12223755 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 11-193 |
| Cow position: | chr2:10185853-10185667 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 11-193 |
| Cow position: | chr2:28649227-28649040 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr2:41173040-41173226 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 11-193 |
| Cow position: | chr2:50077972-50078158 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 11-193 |
| Cow position: | chr2:51617620-51617806 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 11-230 |
| Cow position: | chr2:47602896-47602674 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 13-201 |
| Cow position: | chr2:31298162-31298348 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 18-184 |
| Cow position: | chr2:5870003-5869836 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 19-192 |
| Cow position: | chr2:6961901-6962073 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 28-191 |
| Cow position: | chr2:19011738-19011903 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 28-193 |
| Cow position: | chr2:282297-282131 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr2:13045321-13045155 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 28-202 |
| Cow position: | chr2:52062937-52063112 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 129 |
| Conread position: | 40-193 |
| Cow position: | chr2:42670301-42670147 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 47-550 |
| Cow position: | chr2:16075096-16074554 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 48-153 |
| Cow position: | chr2:41686923-41687028 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-550 |
| Cow position: | chr2:16900834-16901238 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 11 |
| Conread position: | 176-535 |
| Cow position: | chr2:28619365-28618998 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 187-517 |
| Cow position: | chr2:72234357-72234019 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 147, 44 |
| Conread position: | 188-550 |
| Cow position: | chr2:65937643-65937251 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 202 |
| Conread position: | 190-550 |
| Cow position: | chr2:51617853-51618241 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 191-536 |
| Cow position: | chr2:40453512-40453865 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 197-532 |
| Cow position: | chr2:41779832-41780184 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 75 |
| Conread position: | 198-532 |
| Cow position: | chr2:5903711-5903379 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 80 |
| Conread position: | 198-534 |
| Cow position: | chr2:24925172-24925534 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 337 |
| Conread position: | 198-534 |
| Cow position: | chr2:34051765-34052123 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 198-534 |
| Cow position: | chr2:55483538-55483188 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 198-547 |
| Cow position: | chr2:34564052-34563696 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 198-550 |
| Cow position: | chr2:25887936-25887568 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 41 |
| Conread position: | 198-550 |
| Cow position: | chr2:44990692-44990324 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 199-534 |
| Cow position: | chr2:13045105-13044747 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 333 |
| Conread position: | 200-534 |
| Cow position: | chr2:32434709-32434356 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 204-544 |
| Cow position: | chr2:47811461-47811825 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 327 |
| Conread position: | 204-550 |
| Cow position: | chr2:31298404-31298771 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 317 |
| Conread position: | 206-517 |
| Cow position: | chr2:12516574-12516254 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 211-539 |
| Cow position: | chr2:6962138-6962484 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 212-550 |
| Cow position: | chr2:54738112-54738470 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 212-550 |
| Cow position: | chr2:57336166-57336527 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 117, 320 |
| Conread position: | 215-547 |
| Cow position: | chr2:10185604-10185248 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 318 |
| Conread position: | 215-550 |
| Cow position: | chr2:11158498-11158138 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 319 |
| Conread position: | 219-536 |
| Cow position: | chr2:364440-364099 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 199 |
| Conread position: | 219-536 |
| Cow position: | chr2:47037806-47037465 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 110, 313 |
| Conread position: | 232-534 |
| Cow position: | chr2:72187843-72187534 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 233-550 |
| Cow position: | chr2:49628419-49628758 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 94, 83 |
| Conread position: | 233-582 |
| Cow position: | chr2:50078230-50078581 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 237-531 |
| Cow position: | chr2:32656298-32656607 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 48 |
| Conread position: | 242-537 |
| Cow position: | chr2:19225531-19225843 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 225 |
| Conread position: | 242-550 |
| Cow position: | chr2:72681458-72681136 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 243-516 |
| Cow position: | chr2:53540589-53540888 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 248-504 |
| Cow position: | chr2:20901433-20901152 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 262-534 |
| Cow position: | chr2:25743214-25743508 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 280-584 |
| Cow position: | chr2:43445640-43445950 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 246 |
| Conread position: | 282-513 |
| Cow position: | chr2:45938991-45938745 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 203 |
| Conread position: | 305-550 |
| Cow position: | chr2:10264690-10264425 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 28, 224 |
| Conread position: | 310-532 |
| Cow position: | chr2:6880076-6880317 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 20, 218 |
| Conread position: | 328-550 |
| Cow position: | chr2:24471886-24471650 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 79, 193 |
| Conread position: | 329-582 |
| Cow position: | chr2:52063508-52063773 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 192 |
| Conread position: | 333-517 |
| Cow position: | chr2:16291431-16291636 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 197 |
| Conread position: | 338-544 |
| Cow position: | chr2:54693711-54693924 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 339-550 |
| Cow position: | chr2:32065287-32065056 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 190 |
| Conread position: | 348-550 |
| Cow position: | chr2:64768416-64768211 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 77 |
Show alignments to all cow chromosomes.