Cow genome map

Conread name: rthg23_c7.y1

Conread position: 1-196
Cow position: chr21:30071-30271 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 32, 154

Conread position: 11-166
Cow position: chr21:2417220-2417382 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 11-180
Cow position: chr21:35144761-35144935 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 144

Conread position: 11-190
Cow position: chr21:2511845-2512030 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 34

Conread position: 11-190
Cow position: chr21:13313763-13313943 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 82

Conread position: 11-191
Cow position: chr21:18817550-18817363 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 22, 152

Conread position: 11-193
Cow position: chr21:2882734-2882547 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 22, 154

Conread position: 11-193
Cow position: chr21:5840260-5840073 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 22, 144

Conread position: 11-193
Cow position: chr21:10567680-10567858 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 37

Conread position: 11-208
Cow position: chr21:37719016-37718814 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 142

Conread position: 11-375
Cow position: chr21:4077837-4078194 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 149

Conread position: 17-193
Cow position: chr21:45782496-45782672 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 29, 12

Conread position: 19-193
Cow position: chr21:40270655-40270484 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 28-192
Cow position: chr21:146954-147119 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 21, 123

Conread position: 28-193
Cow position: chr21:360668-360834 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 118

Conread position: 28-193
Cow position: chr21:3779792-3779958 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 123

Conread position: 28-193
Cow position: chr21:31515303-31515136 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 124

Conread position: 28-528
Cow position: chr21:20743555-20743031 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 29-192
Cow position: chr21:467894-468054 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 108

Conread position: 165-550
Cow position: chr21:33253388-33253794 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 11

Conread position: 176-550
Cow position: chr21:1286985-1286602 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 188-534
Cow position: chr21:27284694-27285064 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 345

Conread position: 188-534
Cow position: chr21:47942175-47942544 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 55

Conread position: 188-550
Cow position: chr21:147158-147535 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 53

Conread position: 193-550
Cow position: chr21:27566978-27567357 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 192

Conread position: 197-532
Cow position: chr21:2512084-2512442 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 254
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 133, 335

Conread position: 198-509
Cow position: chr21:4564709-4565037 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 120, 35

Conread position: 198-517
Cow position: chr21:45782722-45783054 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 34

Conread position: 198-536
Cow position: chr21:10851324-10851676 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 120

Conread position: 198-547
Cow position: chr21:28613587-28613936 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 202, 88

Conread position: 198-550
Cow position: chr21:3780007-3780385 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 337

Conread position: 198-550
Cow position: chr21:4185165-4185530 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 14

Conread position: 198-550
Cow position: chr21:27069723-27069349 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 76

Conread position: 198-550
Cow position: chr21:31515078-31514703 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 334

Conread position: 198-550
Cow position: chr21:47646570-47646946 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 76

Conread position: 200-534
Cow position: chr21:360901-361260 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 263
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 92, 120

Conread position: 204-530
Cow position: chr21:2417460-2417804 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 63

Conread position: 204-550
Cow position: chr21:11506855-11507225 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 123, 329

Conread position: 211-522
Cow position: chr21:30323-30627 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 264

Conread position: 212-536
Cow position: chr21:42914621-42914963 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 100, 15

Conread position: 235-534
Cow position: chr21:5018419-5018735 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 95, 39

Conread position: 244-510
Cow position: chr21:6625807-6626105 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 86, 0

Conread position: 347-517
Cow position: chr21:2673574-2673390 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 20, 60

Conread position: 351-550
Cow position: chr21:13297999-13298206 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 70, 9

Conread position: 367-550
Cow position: chr21:2880407-2880210 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 39

Conread position: 399-550
Cow position: chr21:34655287-34655447 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 118

Show alignments to all cow chromosomes.