Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 1-207 |
| Cow position: | chr3:64357046-64356834 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 154 |
| Conread position: | 11-191 |
| Cow position: | chr3:6686568-6686750 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 11-193 |
| Cow position: | chr3:18541382-18541196 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 11-193 |
| Cow position: | chr3:24445320-24445136 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 11-193 |
| Cow position: | chr3:49544451-49544265 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 133 |
| Conread position: | 11-193 |
| Cow position: | chr3:59862131-59862318 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr3:75040402-75040215 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-196 |
| Cow position: | chr3:66620942-66621131 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 20-202 |
| Cow position: | chr3:63002771-63002588 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 28-188 |
| Cow position: | chr3:56339639-56339478 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr3:21181921-21181755 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr3:45975282-45975448 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr3:53516392-53516558 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-201 |
| Cow position: | chr3:19756169-19755995 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 131 |
| Conread position: | 28-202 |
| Cow position: | chr3:10240436-10240611 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 31-191 |
| Cow position: | chr3:4028955-4029116 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 120 |
| Conread position: | 48-190 |
| Cow position: | chr3:34506546-34506405 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 165-584 |
| Cow position: | chr3:53516566-53516981 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 11 |
| Conread position: | 166-536 |
| Cow position: | chr3:36118855-36119232 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 177-550 |
| Cow position: | chr3:49136602-49136200 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 180-550 |
| Cow position: | chr3:3523997-3524380 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 150, 39 |
| Conread position: | 180-550 |
| Cow position: | chr3:64016397-64016000 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 180-550 |
| Cow position: | chr3:64027162-64026770 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 150, 39 |
| Conread position: | 180-583 |
| Cow position: | chr3:19879619-19880042 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 146, 39 |
| Conread position: | 187-532 |
| Cow position: | chr3:50916316-50916691 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 188-517 |
| Cow position: | chr3:24346945-24347285 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 188-530 |
| Cow position: | chr3:2854463-2854101 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 339 |
| Conread position: | 188-530 |
| Cow position: | chr3:48229493-48229131 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 188-550 |
| Cow position: | chr3:4287067-4287454 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 346 |
| Conread position: | 188-550 |
| Cow position: | chr3:15054689-15054336 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 9 |
| Conread position: | 188-550 |
| Cow position: | chr3:18812482-18812863 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 188-550 |
| Cow position: | chr3:21181718-21181328 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 349 |
| Conread position: | 188-550 |
| Cow position: | chr3:40824371-40824757 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 345 |
| Conread position: | 188-550 |
| Cow position: | chr3:68698988-68698608 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 194-534 |
| Cow position: | chr3:78026430-78026064 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 228 |
| Conread position: | 196-533 |
| Cow position: | chr3:38494229-38494589 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 336 |
| Conread position: | 197-550 |
| Cow position: | chr3:18860406-18860782 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 129, 264 |
| Conread position: | 198-517 |
| Cow position: | chr3:18355016-18354677 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 198-517 |
| Cow position: | chr3:70888135-70888470 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 198-534 |
| Cow position: | chr3:49544215-49543855 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 335 |
| Conread position: | 198-534 |
| Cow position: | chr3:65208189-65208531 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 248 |
| Conread position: | 198-539 |
| Cow position: | chr3:24644225-24644578 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 198-550 |
| Cow position: | chr3:2709877-2709502 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 120 |
| Conread position: | 198-551 |
| Cow position: | chr3:24445083-24444707 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 334 |
| Conread position: | 200-522 |
| Cow position: | chr3:19939885-19940232 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 200-550 |
| Cow position: | chr3:5994092-5993715 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 211-550 |
| Cow position: | chr3:30617917-30617555 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 321 |
| Conread position: | 212-536 |
| Cow position: | chr3:37970050-37970398 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 320 |
| Conread position: | 212-550 |
| Cow position: | chr3:7157716-7157355 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 104 |
| Conread position: | 212-550 |
| Cow position: | chr3:47080406-47080045 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 118, 320 |
| Conread position: | 212-550 |
| Cow position: | chr3:68872742-68872390 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 119, 84 |
| Conread position: | 212-582 |
| Cow position: | chr3:41209598-41209205 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 320 |
| Conread position: | 213-550 |
| Cow position: | chr3:56146321-56146668 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 162 |
| Conread position: | 218-517 |
| Cow position: | chr3:46860277-46859954 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 112, 13 |
| Conread position: | 219-536 |
| Cow position: | chr3:20382038-20382380 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 314 |
| Conread position: | 219-550 |
| Cow position: | chr3:7247555-7247898 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 137, 93 |
| Conread position: | 219-550 |
| Cow position: | chr3:31416030-31416381 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 227-550 |
| Cow position: | chr3:595160-595501 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 5 |
| Conread position: | 230-536 |
| Cow position: | chr3:72631088-72631418 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 236-547 |
| Cow position: | chr3:33634138-33634470 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 242-550 |
| Cow position: | chr3:47087337-47087661 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 171 |
| Conread position: | 266-584 |
| Cow position: | chr3:13476454-13476774 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 299-522 |
| Cow position: | chr3:72671434-72671191 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 332-580 |
| Cow position: | chr3:50126259-50125996 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 337-584 |
| Cow position: | chr3:34198023-34198270 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 346-534 |
| Cow position: | chr3:55486143-55486343 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 175 |
| Conread position: | 371-547 |
| Cow position: | chr3:23206700-23206512 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 42, 35 |
Show alignments to all cow chromosomes.