Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 3-193 |
| Cow position: | chr5:54791980-54791788 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 148 |
| Conread position: | 11-193 |
| Cow position: | chr5:55628652-55628839 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr5:59282980-59283164 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 13-191 |
| Cow position: | chr5:3503455-3503275 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 14-193 |
| Cow position: | chr5:39246148-39245964 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 19, 151 |
| Conread position: | 14-193 |
| Cow position: | chr5:46668614-46668793 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 138 |
| Conread position: | 28-193 |
| Cow position: | chr5:3786601-3786767 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr5:24099351-24099514 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 34-194 |
| Cow position: | chr5:34697294-34697452 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 165-536 |
| Cow position: | chr5:73488694-73488304 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 11 |
| Conread position: | 166-550 |
| Cow position: | chr5:34297806-34298186 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 188-525 |
| Cow position: | chr5:49519445-49519807 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 188-531 |
| Cow position: | chr5:46004971-46004605 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 150 |
| Conread position: | 188-534 |
| Cow position: | chr5:4070093-4070476 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 358 |
| Conread position: | 188-536 |
| Cow position: | chr5:45701200-45701571 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 188-546 |
| Cow position: | chr5:4018310-4017931 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 13, 340 |
| Conread position: | 196-523 |
| Cow position: | chr5:47893651-47893296 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 197-534 |
| Cow position: | chr5:22840688-22840364 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 169, 34 |
| Conread position: | 197-534 |
| Cow position: | chr5:41960838-41960491 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 43 |
| Conread position: | 198-517 |
| Cow position: | chr5:24099561-24099899 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 328 |
| Conread position: | 198-534 |
| Cow position: | chr5:10855919-10855562 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 49 |
| Conread position: | 198-544 |
| Cow position: | chr5:31100526-31100163 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 128 |
| Conread position: | 198-547 |
| Cow position: | chr5:2915346-2915710 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 326 |
| Conread position: | 198-547 |
| Cow position: | chr5:29767026-29767391 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 65 |
| Conread position: | 198-550 |
| Cow position: | chr5:1341136-1340759 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 194 |
| Conread position: | 198-550 |
| Cow position: | chr5:3503209-3502837 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 198-550 |
| Cow position: | chr5:3786824-3787200 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 88 |
| Conread position: | 198-550 |
| Cow position: | chr5:6154006-6153628 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 337 |
| Conread position: | 198-550 |
| Cow position: | chr5:14784459-14784098 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 132, 33 |
| Conread position: | 198-550 |
| Cow position: | chr5:30580235-30580615 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 198-550 |
| Cow position: | chr5:55628888-55629265 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 336 |
| Conread position: | 198-550 |
| Cow position: | chr5:64781119-64780744 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 334 |
| Conread position: | 198-582 |
| Cow position: | chr5:37733244-37733652 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 198-583 |
| Cow position: | chr5:54791736-54791328 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 332 |
| Conread position: | 199-550 |
| Cow position: | chr5:23686994-23686630 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 200-522 |
| Cow position: | chr5:41554437-41554093 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 74, 332 |
| Conread position: | 200-578 |
| Cow position: | chr5:14344532-14344141 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 204-504 |
| Cow position: | chr5:28949977-28949655 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 204-531 |
| Cow position: | chr5:49757768-49757453 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 157, 38 |
| Conread position: | 204-550 |
| Cow position: | chr5:32773668-32774036 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 126, 103 |
| Conread position: | 206-517 |
| Cow position: | chr5:41527887-41527555 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 209-534 |
| Cow position: | chr5:7143139-7142809 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 209-550 |
| Cow position: | chr5:4757268-4756912 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 212-532 |
| Cow position: | chr5:18121572-18121229 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 118, 320 |
| Conread position: | 212-547 |
| Cow position: | chr5:5104133-5104490 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 118, 243 |
| Conread position: | 212-550 |
| Cow position: | chr5:10842468-10842110 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 212-550 |
| Cow position: | chr5:12731799-12731443 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 199 |
| Conread position: | 212-550 |
| Cow position: | chr5:31707474-31707834 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 42 |
| Conread position: | 212-564 |
| Cow position: | chr5:12642834-12642471 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 315 |
| Conread position: | 219-550 |
| Cow position: | chr5:18664701-18665046 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 304 |
| Conread position: | 230-550 |
| Cow position: | chr5:7274773-7275111 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 88 |
| Conread position: | 278-580 |
| Cow position: | chr5:27003212-27003518 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 203 |
| Conread position: | 282-517 |
| Cow position: | chr5:32951882-32952136 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 48, 246 |
| Conread position: | 283-510 |
| Cow position: | chr5:32281784-32281536 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 16, 131 |
| Conread position: | 312-534 |
| Cow position: | chr5:61081203-61080961 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 20, 217 |
| Conread position: | 326-544 |
| Cow position: | chr5:52434766-52435005 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 205 |
| Conread position: | 365-547 |
| Cow position: | chr5:34189986-34190184 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 166 |
| Conread position: | 382-534 |
| Cow position: | chr5:40757551-40757711 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 48, 135 |
| Conread position: | 384-550 |
| Cow position: | chr5:24295710-24295886 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 135 |
Show alignments to all cow chromosomes.