Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 11-152 |
| Cow position: | chr6:40553772-40553628 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 11-191 |
| Cow position: | chr6:35875915-35875730 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 11-192 |
| Cow position: | chr6:703018-703203 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 11-192 |
| Cow position: | chr6:17046860-17047039 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 11-192 |
| Cow position: | chr6:30274090-30273909 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 11-193 |
| Cow position: | chr6:5948976-5948789 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr6:34891323-34891136 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr6:39334068-39333881 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr6:43792912-43792729 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 11-193 |
| Cow position: | chr6:51715341-51715525 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 141 |
| Conread position: | 11-193 |
| Cow position: | chr6:58601281-58601468 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 11-202 |
| Cow position: | chr6:8202984-8203180 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-202 |
| Cow position: | chr6:18973607-18973410 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 191 |
| Conread position: | 11-550 |
| Cow position: | chr6:11724308-11723784 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 345 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 12-193 |
| Cow position: | chr6:58065532-58065728 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 163 |
| Conread position: | 19-193 |
| Cow position: | chr6:51086757-51086931 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 19-202 |
| Cow position: | chr6:65882026-65882208 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 21-181 |
| Cow position: | chr6:3487607-3487447 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 23-193 |
| Cow position: | chr6:47042383-47042213 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 28-162 |
| Cow position: | chr6:64716808-64716943 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr6:1821804-1821637 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 28-193 |
| Cow position: | chr6:15278989-15278823 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr6:25215044-25215207 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 28-193 |
| Cow position: | chr6:25793991-25793825 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 123 |
| Conread position: | 28-193 |
| Cow position: | chr6:39438587-39438753 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-193 |
| Cow position: | chr6:59918253-59918087 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 45-202 |
| Cow position: | chr6:3276533-3276377 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 48-193 |
| Cow position: | chr6:36527145-36527288 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 48-201 |
| Cow position: | chr6:184939-184788 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 165-509 |
| Cow position: | chr6:19336737-19336398 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 165-550 |
| Cow position: | chr6:34891119-34890714 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 11 |
| Conread position: | 165-550 |
| Cow position: | chr6:51086948-51087349 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 11 |
| Conread position: | 188-507 |
| Cow position: | chr6:15278783-15278449 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 14 |
| Conread position: | 188-550 |
| Cow position: | chr6:13944934-13945321 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 13, 130 |
| Conread position: | 188-550 |
| Cow position: | chr6:39910359-39910747 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 347 |
| Conread position: | 188-550 |
| Cow position: | chr6:55542239-55541847 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 206 |
| Conread position: | 188-551 |
| Cow position: | chr6:13105085-13105473 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 346 |
| Conread position: | 191-530 |
| Cow position: | chr6:21836158-21835795 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 197-583 |
| Cow position: | chr6:41228481-41228887 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 198-517 |
| Cow position: | chr6:1821576-1821247 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 230 |
| Conread position: | 198-517 |
| Cow position: | chr6:10609922-10610237 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 53 |
| Conread position: | 198-517 |
| Cow position: | chr6:35875675-35875329 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 338 |
| Conread position: | 198-533 |
| Cow position: | chr6:11273862-11273516 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 198-534 |
| Cow position: | chr6:703254-703606 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 81 |
| Conread position: | 198-534 |
| Cow position: | chr6:64717063-64717418 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 198-547 |
| Cow position: | chr6:7178250-7177882 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 198-549 |
| Cow position: | chr6:1535538-1535164 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 198-550 |
| Cow position: | chr6:3888465-3888104 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 58 |
| Conread position: | 198-550 |
| Cow position: | chr6:15140140-15139765 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 194 |
| Conread position: | 198-550 |
| Cow position: | chr6:29312538-29312915 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 336 |
| Conread position: | 198-550 |
| Cow position: | chr6:39333832-39333465 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 204 |
| Conread position: | 198-550 |
| Cow position: | chr6:40553537-40553173 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 286 |
| Conread position: | 198-550 |
| Cow position: | chr6:40866287-40865912 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 334 |
| Conread position: | 199-534 |
| Cow position: | chr6:58065776-58066124 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 10 |
| Conread position: | 199-550 |
| Cow position: | chr6:914670-915044 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 328 |
| Conread position: | 200-550 |
| Cow position: | chr6:30273853-30273485 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 10 |
| Conread position: | 206-550 |
| Cow position: | chr6:28133958-28134318 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 211-550 |
| Cow position: | chr6:58601533-58601890 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 78 |
| Conread position: | 212-536 |
| Cow position: | chr6:26669812-26669466 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 212-550 |
| Cow position: | chr6:16053158-16053518 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 178 |
| Conread position: | 212-550 |
| Cow position: | chr6:17597255-17596900 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 212-550 |
| Cow position: | chr6:44149506-44149139 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 118, 326 |
| Conread position: | 215-517 |
| Cow position: | chr6:28104801-28104484 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 215-517 |
| Cow position: | chr6:41190372-41190674 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 215-522 |
| Cow position: | chr6:58027728-58028053 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 266 |
| Conread position: | 218-550 |
| Cow position: | chr6:52694073-52694436 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 219-530 |
| Cow position: | chr6:13316413-13316077 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 313 |
| Conread position: | 219-534 |
| Cow position: | chr6:10250548-10250212 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 219-534 |
| Cow position: | chr6:66193454-66193133 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 227-513 |
| Cow position: | chr6:18973352-18973040 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 245-517 |
| Cow position: | chr6:59617199-59617489 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 48 |
| Conread position: | 263-544 |
| Cow position: | chr6:207364-207643 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 266-548 |
| Cow position: | chr6:65897866-65897566 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 276-505 |
| Cow position: | chr6:32072602-32072377 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 281-536 |
| Cow position: | chr6:65915433-65915700 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 309-550 |
| Cow position: | chr6:34196525-34196787 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 372-550 |
| Cow position: | chr6:12626926-12627111 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 9 |
Show alignments to all cow chromosomes.