Cow genome map
| Conread name: | rthg23_c7.y1 |
| Conread position: | 11-162 |
| Cow position: | chr9:59173414-59173261 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 11-192 |
| Cow position: | chr9:51181454-51181267 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 11-193 |
| Cow position: | chr9:17305246-17305059 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 11-193 |
| Cow position: | chr9:22432006-22432193 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 11-194 |
| Cow position: | chr9:10937327-10937512 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 11-516 |
| Cow position: | chr9:43664533-43665020 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 347 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 11-550 |
| Cow position: | chr9:7003536-7004069 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 11-550 |
| Cow position: | chr9:26083794-26083231 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 235 |
| Conread position: | 12-192 |
| Cow position: | chr9:29628018-29627836 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 19-191 |
| Cow position: | chr9:37162069-37161897 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 23-201 |
| Cow position: | chr9:22654320-22654498 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 28-193 |
| Cow position: | chr9:32969702-32969865 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 28-193 |
| Cow position: | chr9:37970444-37970278 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 39-193 |
| Cow position: | chr9:42310443-42310598 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 41-188 |
| Cow position: | chr9:239728-239580 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 111 |
| Conread position: | 160-546 |
| Cow position: | chr9:20939251-20939645 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 36 |
| Conread position: | 179-509 |
| Cow position: | chr9:62736849-62736497 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 14 |
| Conread position: | 180-531 |
| Cow position: | chr9:47042908-47043279 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 180-550 |
| Cow position: | chr9:27935326-27935718 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 146, 39 |
| Conread position: | 188-547 |
| Cow position: | chr9:5141668-5142036 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 188-547 |
| Cow position: | chr9:10322757-10323139 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 188-550 |
| Cow position: | chr9:3005279-3004906 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 25 |
| Conread position: | 188-550 |
| Cow position: | chr9:7061126-7060738 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 188-550 |
| Cow position: | chr9:29027257-29026869 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 199 |
| Conread position: | 188-550 |
| Cow position: | chr9:59481842-59481459 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 229 |
| Conread position: | 196-525 |
| Cow position: | chr9:35315915-35315578 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 198-547 |
| Cow position: | chr9:21410263-21410636 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 335 |
| Conread position: | 198-550 |
| Cow position: | chr9:1995424-1995048 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 335 |
| Conread position: | 198-550 |
| Cow position: | chr9:6250265-6250639 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 148 |
| Conread position: | 198-550 |
| Cow position: | chr9:16176738-16177089 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 12 |
| Conread position: | 198-550 |
| Cow position: | chr9:30673336-30673718 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 341 |
| Conread position: | 198-550 |
| Cow position: | chr9:32969914-32970282 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 198-550 |
| Cow position: | chr9:44819114-44819480 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 103 |
| Conread position: | 199-517 |
| Cow position: | chr9:3936466-3936139 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 133, 220 |
| Conread position: | 199-534 |
| Cow position: | chr9:25188066-25188423 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 204-517 |
| Cow position: | chr9:1981246-1981572 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 38 |
| Conread position: | 204-550 |
| Cow position: | chr9:2871301-2871667 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 204-550 |
| Cow position: | chr9:22654548-22654917 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 328 |
| Conread position: | 209-510 |
| Cow position: | chr9:4649621-4649313 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 121, 65 |
| Conread position: | 212-517 |
| Cow position: | chr9:46042250-46041942 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 212-536 |
| Cow position: | chr9:28678952-28679300 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 118, 320 |
| Conread position: | 212-550 |
| Cow position: | chr9:30827717-30828079 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 114, 206 |
| Conread position: | 213-534 |
| Cow position: | chr9:828126-827783 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 213-547 |
| Cow position: | chr9:4942826-4942474 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 215-534 |
| Cow position: | chr9:37161830-37161488 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 317 |
| Conread position: | 219-536 |
| Cow position: | chr9:3309614-3309941 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 114, 61 |
| Conread position: | 219-550 |
| Cow position: | chr9:13474782-13474435 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 22 |
| Conread position: | 228-524 |
| Cow position: | chr9:3372308-3372011 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 178, 83 |
| Conread position: | 230-550 |
| Cow position: | chr9:37970209-37969871 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 298 |
| Conread position: | 231-550 |
| Cow position: | chr9:59428009-59428344 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 91 |
| Conread position: | 276-532 |
| Cow position: | chr9:25034520-25034241 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 54, 256 |
| Conread position: | 327-517 |
| Cow position: | chr9:18211349-18211557 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 336-547 |
| Cow position: | chr9:2679375-2679602 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 189 |
| Conread position: | 340-584 |
| Cow position: | chr9:26553697-26553940 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 108, 67 |
| Conread position: | 349-544 |
| Cow position: | chr9:22436090-22436299 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 159 |
Show alignments to all cow chromosomes.