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Cow genome map

           
Conread name:
           
rthg25_c11.y1
        

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:102424018-102423802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr1:628191-627910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
94, 248
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:25735092-25734787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr1:484241-484629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr1:89388567-89388151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
19, 203
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:24542346-24542781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 375
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:49317275-49317735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 214
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr1:26895587-26896084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 387
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr1:43378059-43377915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr1:82336895-82336685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr1:98897467-98897716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:73020439-73020688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
2-299
               

               
Cow position:
               
chr1:64572739-64572432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
8, 207
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr1:36998403-36997938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr1:69250654-69250471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 119
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr1:89297887-89298095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr1:89301496-89301704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr1:70416540-70416748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr1:42545579-42545939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
237, 47
               

               
Conread position:
               
3-389
               

               
Cow position:
               
chr1:20667529-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr1:10778775-10778320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 50
               

               
Conread position:
               
3-469
               

               
Cow position:
               
chr1:77620771-77620291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 224
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr1:41027293-41027051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 186
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:77739945-77739662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
16, 122
               

               
Conread position:
               
5-194
               

               
Cow position:
               
chr1:69378379-69378577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 119
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr1:48301232-48301430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr1:101883171-101883381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr1:55685759-55685976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr1:6394775-6394507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr1:31272225-31272522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 200
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr1:64803878-64804338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 207
               

               
Conread position:
               
5-468
               

               
Cow position:
               
chr1:20000537-20001007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
6-187
               

               
Cow position:
               
chr1:87934063-87934242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr1:22730951-22730511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 107
               

               
Conread position:
               
6-461
               

               
Cow position:
               
chr1:43505743-43505272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 194
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr1:72034709-72035181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
6-469
               

               
Cow position:
               
chr1:18936618-18937092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 114
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr1:84787477-84787297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
7-190
               

               
Cow position:
               
chr1:22231869-22231674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
7-194
               

               
Cow position:
               
chr1:90904540-90904734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
7-197
               

               
Cow position:
               
chr1:46143250-46143442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 169
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr1:31801702-31801902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr1:52369969-52370156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
7-202
               

               
Cow position:
               
chr1:25021860-25022061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
7-203
               

               
Cow position:
               
chr1:15875877-15875673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
7-209
               

               
Cow position:
               
chr1:76518642-76518429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
7-212
               

               
Cow position:
               
chr1:92188176-92187962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 201
               

               
Conread position:
               
7-213
               

               
Cow position:
               
chr1:92075696-92075492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
7-213
               

               
Cow position:
               
chr1:95153092-95152874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr1:67529272-67529029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
7-251
               

               
Cow position:
               
chr1:74081783-74082010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
7-251
               

               
Cow position:
               
chr1:76735263-76735507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr1:84127-83887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
7-297
               

               
Cow position:
               
chr1:43855508-43855222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 169
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr1:186063-186354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 151
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr1:42541808-42541515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
7-331
               

               
Cow position:
               
chr1:22824126-22823790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 204
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr1:78079939-78079600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
7-357
               

               
Cow position:
               
chr1:101835033-101834673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 179
               

               
Conread position:
               
7-405
               

               
Cow position:
               
chr1:21955155-21955569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 114
               

               
Conread position:
               
7-406
               

               
Cow position:
               
chr1:40192486-40192874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 139
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr1:28563345-28563769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
7-429
               

               
Cow position:
               
chr1:6304660-6305088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
7-441
               

               
Cow position:
               
chr1:59519128-59518670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
88, 107
               

               
Conread position:
               
7-445
               

               
Cow position:
               
chr1:53370300-53369831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
7-452
               

               
Cow position:
               
chr1:55230190-55229742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 213
               

               
Conread position:
               
7-458
               

               
Cow position:
               
chr1:70538823-70538355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 192
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr1:46218767-46218333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
234, 77
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr1:24534041-24534494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
41, 175
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr1:63434580-63435054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 219
               

               
Conread position:
               
7-462
               

               
Cow position:
               
chr1:54206602-54207068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
81, 175
               

               
Conread position:
               
7-463
               

               
Cow position:
               
chr1:82880848-82880412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 79
               

               
Conread position:
               
7-468
               

               
Cow position:
               
chr1:21787541-21787068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 58
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr1:37321793-37322265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
7-475
               

               
Cow position:
               
chr1:31347716-31348174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 201
               

               
Conread position:
               
8-453
               

               
Cow position:
               
chr1:71119738-71119268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
8-458
               

               
Cow position:
               
chr1:8919367-8919805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
209, 61
               

               
Conread position:
               
8-469
               

               
Cow position:
               
chr1:73960902-73960441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
265, 53
               

               
Conread position:
               
9-195
               

               
Cow position:
               
chr1:53403000-53402802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
9-213
               

               
Cow position:
               
chr1:76739700-76739907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
9-214
               

               
Cow position:
               
chr1:84595105-84594890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
9-215
               

               
Cow position:
               
chr1:40303762-40303552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
9-218
               

               
Cow position:
               
chr1:98556903-98557121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
9-299
               

               
Cow position:
               
chr1:4391052-4391364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 240
               

               
Conread position:
               
9-375
               

               
Cow position:
               
chr1:87198038-87197659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 240
               

               
Conread position:
               
9-460
               

               
Cow position:
               
chr1:99609582-99609116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 169
               

               
Conread position:
               
9-462
               

               
Cow position:
               
chr1:24132848-24133307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 174
               

               
Conread position:
               
9-468
               

               
Cow position:
               
chr1:68826709-68827163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 45
               

               
Conread position:
               
10-174
               

               
Cow position:
               
chr1:53474362-53474198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
87, 136
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:4329695-4329881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
84, 163
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr1:5636858-5637083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 80
               

               
Conread position:
               
10-273
               

               
Cow position:
               
chr1:22943813-22944077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 172
               

               
Conread position:
               
10-343
               

               
Cow position:
               
chr1:86056864-86057195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
87, 144
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr1:68863233-68862831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
229, 80
               

               
Conread position:
               
10-544
               

               
Cow position:
               
chr1:61885125-61884580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
11-193
               

               
Cow position:
               
chr1:100800556-100800746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
11-206
               

               
Cow position:
               
chr1:81638750-81638558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
11-209
               

               
Cow position:
               
chr1:20537416-20537212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
11-214
               

               
Cow position:
               
chr1:89437514-89437712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 127
               

               
Conread position:
               
11-260
               

               
Cow position:
               
chr1:95835581-95835836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 196
               

               
Conread position:
               
11-297
               

               
Cow position:
               
chr1:72105614-72105332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
11-315
               

               
Cow position:
               
chr1:47790454-47790763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
11-330
               

               
Cow position:
               
chr1:84103844-84104178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 213
               

               
Conread position:
               
11-374
               

               
Cow position:
               
chr1:55428739-55429124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 200
               

               
Conread position:
               
11-435
               

               
Cow position:
               
chr1:87072908-87072479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
11-460
               

               
Cow position:
               
chr1:38277812-38278295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
11-469
               

               
Cow position:
               
chr1:7740156-7739712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 169
               

               
Conread position:
               
11-469
               

               
Cow position:
               
chr1:52435489-52435011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 196
               

               
Conread position:
               
11-469
               

               
Cow position:
               
chr1:96019442-96019013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
11-483
               

               
Cow position:
               
chr1:6166445-6165977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 167
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr1:32217451-32217260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 151
               

               
Conread position:
               
12-274
               

               
Cow position:
               
chr1:500389-500120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 208
               

               
Conread position:
               
12-333
               

               
Cow position:
               
chr1:6854107-6854407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
12-469
               

               
Cow position:
               
chr1:8830-8363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 193
               

               
Conread position:
               
12-481
               

               
Cow position:
               
chr1:75745073-75744590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 35
               

               
Conread position:
               
13-180
               

               
Cow position:
               
chr1:41022627-41022455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
13-257
               

               
Cow position:
               
chr1:102648491-102648243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
61, 196
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr1:30035436-30035150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
13-355
               

               
Cow position:
               
chr1:23512461-23512804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
13-462
               

               
Cow position:
               
chr1:89741784-89742264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
11, 212
               

               
Conread position:
               
14-175
               

               
Cow position:
               
chr1:40284439-40284598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
14-190
               

               
Cow position:
               
chr1:90820270-90820451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
14-193
               

               
Cow position:
               
chr1:96043811-96043641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
132, 60
               

               
Conread position:
               
14-194
               

               
Cow position:
               
chr1:11770032-11770214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
14-194
               

               
Cow position:
               
chr1:78066333-78066515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
14-195
               

               
Cow position:
               
chr1:54569912-54569719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
14-200
               

               
Cow position:
               
chr1:64960236-64960415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr1:527872-528059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr1:20104476-20104279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
14-207
               

               
Cow position:
               
chr1:99637041-99637245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr1:70483125-70483326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr1:7793323-7793514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr1:22461028-22461231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr1:43499100-43499293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr1:48618037-48618241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr1:68688789-68688586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
14-215
               

               
Cow position:
               
chr1:19031112-19031300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
14-216
               

               
Cow position:
               
chr1:63461088-63460878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
14-243
               

               
Cow position:
               
chr1:46245525-46245770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
14-244
               

               
Cow position:
               
chr1:66752422-66752651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
14-253
               

               
Cow position:
               
chr1:97144261-97144495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
74, 165
               

               
Conread position:
               
14-253
               

               
Cow position:
               
chr1:102468412-102468647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
14-273
               

               
Cow position:
               
chr1:16060798-16061067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
14-273
               

               
Cow position:
               
chr1:62235246-62235499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chr1:78838997-78838720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:22526084-22525794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
73, 189
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:49824856-49825151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:78794026-78794306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
83, 198
               

               
Conread position:
               
14-300
               

               
Cow position:
               
chr1:3815471-3815773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
47, 169
               

               
Conread position:
               
14-339
               

               
Cow position:
               
chr1:56225992-56225673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
67, 190
               

               
Conread position:
               
14-353
               

               
Cow position:
               
chr1:91023258-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
14-355
               

               
Cow position:
               
chr1:96304763-96305127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
14-429
               

               
Cow position:
               
chr1:15334099-15333661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 168
               

               
Conread position:
               
14-432
               

               
Cow position:
               
chr1:34771289-34771726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
14-459
               

               
Cow position:
               
chr1:13547768-13548239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 199
               

               
Conread position:
               
14-459
               

               
Cow position:
               
chr1:53521115-53520657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
14-459
               

               
Cow position:
               
chr1:66355523-66355957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
238, 70
               

               
Conread position:
               
14-460
               

               
Cow position:
               
chr1:39417921-39418368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 43
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr1:52496979-52496524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 153
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr1:78811248-78810784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
75, 193
               

               
Conread position:
               
14-464
               

               
Cow position:
               
chr1:100552176-100551716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 81
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr1:15547675-15547210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr1:91065947-91066407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 148
               

               
Conread position:
               
14-474
               

               
Cow position:
               
chr1:30066812-30066376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 50
               

               
Conread position:
               
14-542
               

               
Cow position:
               
chr1:3923594-3924128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 200
               

               
Conread position:
               
14-542
               

               
Cow position:
               
chr1:74946929-74947442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
203, 35
               

               
Conread position:
               
14-544
               

               
Cow position:
               
chr1:93110422-93110952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
152, 71
               

               
Conread position:
               
15-175
               

               
Cow position:
               
chr1:75227116-75227279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
15-195
               

               
Cow position:
               
chr1:91796032-91796206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
15-196
               

               
Cow position:
               
chr1:79663244-79663418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
15-203
               

               
Cow position:
               
chr1:95156756-95156951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
15-213
               

               
Cow position:
               
chr1:32014401-32014201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
12, 188
               

               
Conread position:
               
15-239
               

               
Cow position:
               
chr1:49980917-49980693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 154
               

               
Conread position:
               
15-253
               

               
Cow position:
               
chr1:81481173-81481414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 192
               

               
Conread position:
               
15-284
               

               
Cow position:
               
chr1:102754059-102753790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 17
               

               
Conread position:
               
15-313
               

               
Cow position:
               
chr1:67919337-67919039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
15-330
               

               
Cow position:
               
chr1:69227240-69227566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 156
               

               
Conread position:
               
15-357
               

               
Cow position:
               
chr1:46030155-46030508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 74
               

               
Conread position:
               
15-359
               

               
Cow position:
               
chr1:41115527-41115868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
256, 66
               

               
Conread position:
               
15-359
               

               
Cow position:
               
chr1:62519575-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
70, 195
               

               
Conread position:
               
15-365
               

               
Cow position:
               
chr1:88913529-88913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 154
               

               
Conread position:
               
15-380
               

               
Cow position:
               
chr1:101632143-101632513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
224, 53
               

               
Conread position:
               
15-384
               

               
Cow position:
               
chr1:90621297-90621689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
15-438
               

               
Cow position:
               
chr1:14980929-14981347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
179, 73
               

               
Conread position:
               
15-456
               

               
Cow position:
               
chr1:97622030-97622444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr1:45019600-45020055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr1:81568820-81569288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
82, 207
               

               
Conread position:
               
16-192
               

               
Cow position:
               
chr1:70044552-70044379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
168, 86
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr1:32035506-32035691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
16-204
               

               
Cow position:
               
chr1:62469266-62469073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 161
               

               
Conread position:
               
16-213
               

               
Cow position:
               
chr1:73551294-73551507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
16-258
               

               
Cow position:
               
chr1:55753011-55753250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 185
               

               
Conread position:
               
16-273
               

               
Cow position:
               
chr1:19515409-19515666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 193
               

               
Conread position:
               
16-273
               

               
Cow position:
               
chr1:33998957-33998705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
16-273
               

               
Cow position:
               
chr1:101507558-101507306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
16-317
               

               
Cow position:
               
chr1:38419234-38418929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
16-333
               

               
Cow position:
               
chr1:18414281-18414580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
238, 29
               

               
Conread position:
               
16-361
               

               
Cow position:
               
chr1:63530768-63530421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 193
               

               
Conread position:
               
16-394
               

               
Cow position:
               
chr1:68763476-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 173
               

               
Conread position:
               
16-402
               

               
Cow position:
               
chr1:83072648-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
16-425
               

               
Cow position:
               
chr1:74955824-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 88
               

               
Conread position:
               
16-458
               

               
Cow position:
               
chr1:95177126-95176687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 52
               

               
Conread position:
               
16-459
               

               
Cow position:
               
chr1:52414775-52415208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
176, 54
               

               
Conread position:
               
16-460
               

               
Cow position:
               
chr1:39426809-39427231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 66
               

               
Conread position:
               
16-460
               

               
Cow position:
               
chr1:79164874-79165342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
16-464
               

               
Cow position:
               
chr1:82378980-82378540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
231, 68
               

               
Conread position:
               
16-465
               

               
Cow position:
               
chr1:57119158-57119597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
217, 70
               

               
Conread position:
               
16-466
               

               
Cow position:
               
chr1:48443983-48444438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 194
               

               
Conread position:
               
16-468
               

               
Cow position:
               
chr1:54478524-54478064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 74
               

               
Conread position:
               
16-469
               

               
Cow position:
               
chr1:64302042-64302491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
17-199
               

               
Cow position:
               
chr1:42775113-42774927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
17-206
               

               
Cow position:
               
chr1:96558639-96558839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr1:46172812-46172614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
17-208
               

               
Cow position:
               
chr1:87149609-87149807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr1:242759-242537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
17-277
               

               
Cow position:
               
chr1:17056197-17055937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 108
               

               
Conread position:
               
17-361
               

               
Cow position:
               
chr1:22192977-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 189
               

               
Conread position:
               
17-365
               

               
Cow position:
               
chr1:42175935-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 200
               

               
Conread position:
               
17-427
               

               
Cow position:
               
chr1:8287423-8287831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
17-450
               

               
Cow position:
               
chr1:44507175-44506728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
17-453
               

               
Cow position:
               
chr1:56477792-56477352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 183
               

               
Conread position:
               
17-458
               

               
Cow position:
               
chr1:34160035-34159584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 199
               

               
Conread position:
               
17-462
               

               
Cow position:
               
chr1:25383876-25383407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
74, 191
               

               
Conread position:
               
17-462
               

               
Cow position:
               
chr1:63504521-63504087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
242, 52
               

               
Conread position:
               
17-469
               

               
Cow position:
               
chr1:41056886-41056425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
17-469
               

               
Cow position:
               
chr1:100324547-100324985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
17-535
               

               
Cow position:
               
chr1:196799-197333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 101
               

               
Conread position:
               
18-201
               

               
Cow position:
               
chr1:95704010-95703820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 139
               

               
Conread position:
               
18-203
               

               
Cow position:
               
chr1:22828366-22828559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
18-207
               

               
Cow position:
               
chr1:15628485-15628291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 167
               

               
Conread position:
               
18-208
               

               
Cow position:
               
chr1:49297857-49297659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
18-208
               

               
Cow position:
               
chr1:81364470-81364268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
18-209
               

               
Cow position:
               
chr1:61373917-61373730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
18-209
               

               
Cow position:
               
chr1:97536484-97536295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
180, 85
               

               
Conread position:
               
18-213
               

               
Cow position:
               
chr1:89835916-89835722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 176
               

               
Conread position:
               
18-229
               

               
Cow position:
               
chr1:93590384-93590599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
18-241
               

               
Cow position:
               
chr1:90267930-90267702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
77, 193
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:92524223-92523987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 192
               

               
Conread position:
               
18-273
               

               
Cow position:
               
chr1:88360091-88359829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 196
               

               
Conread position:
               
18-296
               

               
Cow position:
               
chr1:31819309-31819033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
18-314
               

               
Cow position:
               
chr1:71665728-71666028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 187
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr1:42868744-42869064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
18-398
               

               
Cow position:
               
chr1:54156528-54156929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 160
               

               
Conread position:
               
18-409
               

               
Cow position:
               
chr1:99570292-99570664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
18-430
               

               
Cow position:
               
chr1:7971610-7971210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
18-450
               

               
Cow position:
               
chr1:42887074-42887503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 188
               

               
Conread position:
               
18-461
               

               
Cow position:
               
chr1:6759838-6760268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 86
               

               
Conread position:
               
18-461
               

               
Cow position:
               
chr1:43352446-43352900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
6, 177
               

               
Conread position:
               
18-462
               

               
Cow position:
               
chr1:47658554-47658103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
69, 192
               

               
Conread position:
               
18-462
               

               
Cow position:
               
chr1:72011616-72012055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 77
               

               
Conread position:
               
18-462
               

               
Cow position:
               
chr1:102266064-102266521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 201
               

               
Conread position:
               
18-463
               

               
Cow position:
               
chr1:50930774-50931222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 164
               

               
Conread position:
               
18-464
               

               
Cow position:
               
chr1:88338856-88338443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr1:21130921-21131345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 46
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr1:51394624-51394160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 189
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr1:81290710-81290259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
18-483
               

               
Cow position:
               
chr1:95101157-95100690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 191
               

               
Conread position:
               
19-203
               

               
Cow position:
               
chr1:94823184-94823379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
19-207
               

               
Cow position:
               
chr1:58420403-58420212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 145
               

               
Conread position:
               
19-207
               

               
Cow position:
               
chr1:67674403-67674593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 167
               

               
Conread position:
               
19-209
               

               
Cow position:
               
chr1:34001248-34001054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
19-209
               

               
Cow position:
               
chr1:90840816-90840622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
157, 75
               

               
Conread position:
               
19-213
               

               
Cow position:
               
chr1:6731384-6731183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
19-213
               

               
Cow position:
               
chr1:45099962-45099761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 181
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr1:63994350-63994562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
19-244
               

               
Cow position:
               
chr1:38706648-38706877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
19-278
               

               
Cow position:
               
chr1:76612927-76613193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 191
               

               
Conread position:
               
19-296
               

               
Cow position:
               
chr1:98583953-98583679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 169
               

               
Conread position:
               
19-299
               

               
Cow position:
               
chr1:71350519-71350804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 191
               

               
Conread position:
               
19-319
               

               
Cow position:
               
chr1:75250317-75250015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
19-420
               

               
Cow position:
               
chr1:41289573-41289973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
13, 187
               

               
Conread position:
               
19-437
               

               
Cow position:
               
chr1:81515444-81515012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 273
               

               
Conread position:
               
19-462
               

               
Cow position:
               
chr1:70379961-70380398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
254, 56
               

               
Conread position:
               
19-463
               

               
Cow position:
               
chr1:35162610-35162151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 48
               

               
Conread position:
               
19-464
               

               
Cow position:
               
chr1:61564986-61564537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
19-466
               

               
Cow position:
               
chr1:56225671-56225221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chr1:53374633-53374176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 32
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chr1:85029141-85028702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
138, 51
               

               
Conread position:
               
19-479
               

               
Cow position:
               
chr1:69678118-69678592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
19-481
               

               
Cow position:
               
chr1:59650456-59649996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
227, 38
               

               
Conread position:
               
20-208
               

               
Cow position:
               
chr1:5751519-5751321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
20-214
               

               
Cow position:
               
chr1:51860360-51860559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
20-239
               

               
Cow position:
               
chr1:81858697-81858919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 196
               

               
Conread position:
               
20-282
               

               
Cow position:
               
chr1:50765818-50765554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 174
               

               
Conread position:
               
20-369
               

               
Cow position:
               
chr1:38754121-38753754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
71, 211
               

               
Conread position:
               
20-462
               

               
Cow position:
               
chr1:54258774-54258315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 139
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr1:39224736-39225027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
234, 69
               

               
Conread position:
               
21-458
               

               
Cow position:
               
chr1:102349557-102350006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
22-208
               

               
Cow position:
               
chr1:95049663-95049856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
22-210
               

               
Cow position:
               
chr1:90595375-90595566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
22-239
               

               
Cow position:
               
chr1:63079203-63078993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr1:67585753-67585529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
73, 119
               

               
Conread position:
               
22-299
               

               
Cow position:
               
chr1:30983290-30983568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 167
               

               
Conread position:
               
22-299
               

               
Cow position:
               
chr1:72813820-72813533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
22-299
               

               
Cow position:
               
chr1:89449100-89448816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
22-458
               

               
Cow position:
               
chr1:93528896-93528442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
22-461
               

               
Cow position:
               
chr1:28177182-28176749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 17
               

               
Conread position:
               
22-473
               

               
Cow position:
               
chr1:34856422-34856893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 189
               

               
Conread position:
               
22-487
               

               
Cow position:
               
chr1:23100085-23099621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
22-542
               

               
Cow position:
               
chr1:82337578-82338108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 162
               

               
Conread position:
               
23-257
               

               
Cow position:
               
chr1:95618842-95618607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
64, 183
               

               
Conread position:
               
23-273
               

               
Cow position:
               
chr1:22035809-22035557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
76, 181
               

               
Conread position:
               
23-419
               

               
Cow position:
               
chr1:75383164-75382782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 93
               

               
Conread position:
               
23-461
               

               
Cow position:
               
chr1:16766885-16767336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 171
               

               
Conread position:
               
24-207
               

               
Cow position:
               
chr1:85339577-85339396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 152
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr1:83677125-83677361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
24-299
               

               
Cow position:
               
chr1:60987192-60986912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 181
               

               
Conread position:
               
24-464
               

               
Cow position:
               
chr1:100422020-100421589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
25-193
               

               
Cow position:
               
chr1:96362239-96362404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
27-197
               

               
Cow position:
               
chr1:3607992-3607823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
29-317
               

               
Cow position:
               
chr1:47886285-47886584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
62, 172
               

               
Conread position:
               
30-211
               

               
Cow position:
               
chr1:731776-731971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
30-237
               

               
Cow position:
               
chr1:61011369-61011166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
59, 167
               

               
Conread position:
               
30-273
               

               
Cow position:
               
chr1:37726220-37726471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 180
               

               
Conread position:
               
30-331
               

               
Cow position:
               
chr1:49082940-49082628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 196
               

               
Conread position:
               
30-343
               

               
Cow position:
               
chr1:24406720-24407024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
207, 50
               

               
Conread position:
               
30-469
               

               
Cow position:
               
chr1:23633733-23634159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 177
               

               
Conread position:
               
31-212
               

               
Cow position:
               
chr1:78793810-78793999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
31-284
               

               
Cow position:
               
chr1:45223769-45223517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
67, 171
               

               
Conread position:
               
31-469
               

               
Cow position:
               
chr1:77720067-77720486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
169, 59
               

               
Conread position:
               
31-544
               

               
Cow position:
               
chr1:6941659-6941139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 218
               

               
Conread position:
               
31-544
               

               
Cow position:
               
chr1:6959072-6958546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 218
               

               
Conread position:
               
35-201
               

               
Cow position:
               
chr1:63905075-63905244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
36-459
               

               
Cow position:
               
chr1:92963565-92963149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 55
               

               
Conread position:
               
38-194
               

               
Cow position:
               
chr1:23373047-23372881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
38-241
               

               
Cow position:
               
chr1:69940638-69940842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 184
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:11729357-11728956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
38-469
               

               
Cow position:
               
chr1:1802356-1801885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
57, 370
               

               
Conread position:
               
56-299
               

               
Cow position:
               
chr1:69694830-69695073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 141
               

               
Conread position:
               
56-447
               

               
Cow position:
               
chr1:4291322-4290919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 15
               

               
Conread position:
               
76-299
               

               
Cow position:
               
chr1:71796168-71796395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
78-437
               

               
Cow position:
               
chr1:89076497-89076863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
146, 12
               

               
Conread position:
               
78-544
               

               
Cow position:
               
chr1:93810566-93810114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 24
               

               
Conread position:
               
79-243
               

               
Cow position:
               
chr1:54157434-54157272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
81-366
               

               
Cow position:
               
chr1:74928024-74927720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 123
               

               
Conread position:
               
84-248
               

               
Cow position:
               
chr1:43148412-43148574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
84-283
               

               
Cow position:
               
chr1:43311898-43312094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
84-361
               

               
Cow position:
               
chr1:91811909-91811631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
84-437
               

               
Cow position:
               
chr1:78810009-78809656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
84-466
               

               
Cow position:
               
chr1:39509927-39510298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
187, 22
               

               
Conread position:
               
85-274
               

               
Cow position:
               
chr1:84768749-84768932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
86-202
               

               
Cow position:
               
chr1:45283325-45283208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
86-460
               

               
Cow position:
               
chr1:74822582-74822201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 123
               

               
Conread position:
               
87-204
               

               
Cow position:
               
chr1:76080935-76080820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
87-238
               

               
Cow position:
               
chr1:3417483-3417332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
87-329
               

               
Cow position:
               
chr1:58037146-58036908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
152, 8
               

               
Conread position:
               
87-414
               

               
Cow position:
               
chr1:19885511-19885180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
87-461
               

               
Cow position:
               
chr1:47233350-47233726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
154, 8
               

               
Conread position:
               
87-461
               

               
Cow position:
               
chr1:80422400-80422051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
171, 15
               

               
Conread position:
               
87-469
               

               
Cow position:
               
chr1:69264936-69264563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 8
               

               
Conread position:
               
87-474
               

               
Cow position:
               
chr1:45007596-45007202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
88-210
               

               
Cow position:
               
chr1:31630160-31630281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
88-284
               

               
Cow position:
               
chr1:98576174-98575983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
88-366
               

               
Cow position:
               
chr1:97939086-97938809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 128
               

               
Conread position:
               
88-469
               

               
Cow position:
               
chr1:61741841-61742227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
74, 7
               

               
Conread position:
               
90-199
               

               
Cow position:
               
chr1:52506047-52506154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
90-299
               

               
Cow position:
               
chr1:30417921-30418119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
90-428
               

               
Cow position:
               
chr1:49433139-49433483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 5
               

               
Conread position:
               
90-456
               

               
Cow position:
               
chr1:98594690-98594325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
149, 5
               

               
Conread position:
               
90-462
               

               
Cow position:
               
chr1:8349199-8349563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
27, 5
               

               
Conread position:
               
91-197
               

               
Cow position:
               
chr1:99024105-99024212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
91-198
               

               
Cow position:
               
chr1:51371692-51371801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
91-202
               

               
Cow position:
               
chr1:55194121-55194232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-207
               

               
Cow position:
               
chr1:3776210-3776326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-213
               

               
Cow position:
               
chr1:68127065-68127187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-245
               

               
Cow position:
               
chr1:76436606-76436457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
91-251
               

               
Cow position:
               
chr1:45478737-45478888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
91-257
               

               
Cow position:
               
chr1:61245191-61245373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
91-261
               

               
Cow position:
               
chr1:8670898-8670732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 108
               

               
Conread position:
               
91-261
               

               
Cow position:
               
chr1:71915994-71916160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
91-294
               

               
Cow position:
               
chr1:68672476-68672676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
91-295
               

               
Cow position:
               
chr1:48769927-48769726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
180, 108
               

               
Conread position:
               
91-298
               

               
Cow position:
               
chr1:98512052-98511848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr1:50992058-50991853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 110
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr1:78697646-78697851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr1:85549953-85550159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
182, 108
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr1:99221230-99221432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
91-317
               

               
Cow position:
               
chr1:95153348-95153121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 106
               

               
Conread position:
               
91-369
               

               
Cow position:
               
chr1:97696870-97696577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
91-376
               

               
Cow position:
               
chr1:96081604-96081313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
174, 50
               

               
Conread position:
               
91-461
               

               
Cow position:
               
chr1:57900598-57900992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
7, 163
               

               
Conread position:
               
91-464
               

               
Cow position:
               
chr1:94226429-94226802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
91-466
               

               
Cow position:
               
chr1:48730707-48731084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 107
               

               
Conread position:
               
91-468
               

               
Cow position:
               
chr1:76019572-76019936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 64
               

               
Conread position:
               
91-488
               

               
Cow position:
               
chr1:77880609-77880994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
129, 85
               

               
Conread position:
               
91-544
               

               
Cow position:
               
chr1:52912772-52913196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
92-200
               

               
Cow position:
               
chr1:1875511-1875404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
92-239
               

               
Cow position:
               
chr1:98413897-98413755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
5, 108
               

               
Conread position:
               
93-208
               

               
Cow position:
               
chr1:12989404-12989289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
93-299
               

               
Cow position:
               
chr1:56832658-56832855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
93-361
               

               
Cow position:
               
chr1:97232082-97231800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
157, 10
               

               
Conread position:
               
93-404
               

               
Cow position:
               
chr1:32001198-32001515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 78
               

               
Conread position:
               
93-461
               

               
Cow position:
               
chr1:53458818-53458454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
153, 82
               

               
Conread position:
               
93-469
               

               
Cow position:
               
chr1:84241003-84240641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
94-219
               

               
Cow position:
               
chr1:24791824-24791949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
94-250
               

               
Cow position:
               
chr1:20864175-20864030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
94-460
               

               
Cow position:
               
chr1:53308272-53308642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 37
               

               
Conread position:
               
94-469
               

               
Cow position:
               
chr1:52039758-52039378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
95-207
               

               
Cow position:
               
chr1:81179222-81179339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
95-315
               

               
Cow position:
               
chr1:61846265-61846048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
152, 115
               

               
Conread position:
               
95-361
               

               
Cow position:
               
chr1:60281495-60281215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
95-462
               

               
Cow position:
               
chr1:42873829-42874199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 104
               

               
Conread position:
               
96-207
               

               
Cow position:
               
chr1:79409572-79409460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
96-430
               

               
Cow position:
               
chr1:98461404-98461070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 9
               

               
Conread position:
               
96-449
               

               
Cow position:
               
chr1:40530983-40531348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
104, 213
               

               
Conread position:
               
97-203
               

               
Cow position:
               
chr1:32787835-32787941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
97-207
               

               
Cow position:
               
chr1:46100721-46100831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-208
               

               
Cow position:
               
chr1:33812334-33812224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
97-210
               

               
Cow position:
               
chr1:64706611-64706499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
97-213
               

               
Cow position:
               
chr1:83301831-83301949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
97-213
               

               
Cow position:
               
chr1:92603138-92603022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-215
               

               
Cow position:
               
chr1:57359581-57359461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
97-215
               

               
Cow position:
               
chr1:84288522-84288405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
97-227
               

               
Cow position:
               
chr1:67539678-67539547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 76
               

               
Conread position:
               
97-237
               

               
Cow position:
               
chr1:45873951-45874093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
103, 79
               

               
Conread position:
               
97-254
               

               
Cow position:
               
chr1:42178864-42178705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 118
               

               
Conread position:
               
97-256
               

               
Cow position:
               
chr1:81809020-81809172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
97-273
               

               
Cow position:
               
chr1:86579081-86578908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 78
               

               
Conread position:
               
97-299
               

               
Cow position:
               
chr1:81580296-81580092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
97-299
               

               
Cow position:
               
chr1:92989709-92989508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
142, 108
               

               
Conread position:
               
97-313
               

               
Cow position:
               
chr1:3352581-3352788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
97-314
               

               
Cow position:
               
chr1:77892254-77892047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
144, 74
               

               
Conread position:
               
97-322
               

               
Cow position:
               
chr1:6826180-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
172, 74
               

               
Conread position:
               
97-328
               

               
Cow position:
               
chr1:6972645-6972421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
174, 102
               

               
Conread position:
               
97-342
               

               
Cow position:
               
chr1:68676481-68676236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
97-372
               

               
Cow position:
               
chr1:93554955-93554677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 99
               

               
Conread position:
               
97-407
               

               
Cow position:
               
chr1:43872201-43872532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
97-445
               

               
Cow position:
               
chr1:89341861-89342228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
114, 104
               

               
Conread position:
               
97-465
               

               
Cow position:
               
chr1:4032751-4032379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 102
               

               
Conread position:
               
97-466
               

               
Cow position:
               
chr1:1053698-1053332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
97-469
               

               
Cow position:
               
chr1:39068837-39069210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 100
               

               
Conread position:
               
97-484
               

               
Cow position:
               
chr1:42360407-42359993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 399
               

               
Conread position:
               
97-536
               

               
Cow position:
               
chr1:41252291-41252724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 80
               

               
Conread position:
               
98-210
               

               
Cow position:
               
chr1:19304688-19304578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
98-210
               

               
Cow position:
               
chr1:45673872-45673762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
98-213
               

               
Cow position:
               
chr1:64019403-64019518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
98-221
               

               
Cow position:
               
chr1:36613142-36613266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
98-242
               

               
Cow position:
               
chr1:3914801-3914939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
98-246
               

               
Cow position:
               
chr1:65881923-65881783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
98-255
               

               
Cow position:
               
chr1:101177633-101177482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
98-463
               

               
Cow position:
               
chr1:5135591-5135944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 102
               

               
Conread position:
               
98-469
               

               
Cow position:
               
chr1:34300433-34300807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 101
               

               
Conread position:
               
98-469
               

               
Cow position:
               
chr1:76470761-76470400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
173, 56
               

               
Conread position:
               
99-208
               

               
Cow position:
               
chr1:95388584-95388475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
99-247
               

               
Cow position:
               
chr1:47402645-47402502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
99-273
               

               
Cow position:
               
chr1:8347240-8347072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
99-458
               

               
Cow position:
               
chr1:53425294-53424939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
100-295
               

               
Cow position:
               
chr1:30504617-30504428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
100-462
               

               
Cow position:
               
chr1:66430407-66430049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 88
               

               
Conread position:
               
100-469
               

               
Cow position:
               
chr1:72285952-72286308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
139, 110
               

               
Conread position:
               
101-240
               

               
Cow position:
               
chr1:24570832-24570965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
101-462
               

               
Cow position:
               
chr1:95215075-95215438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 109
               

               
Conread position:
               
101-475
               

               
Cow position:
               
chr1:37309404-37309770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 100
               

               
Conread position:
               
102-299
               

               
Cow position:
               
chr1:61542805-61542999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
169, 74
               

               
Conread position:
               
102-464
               

               
Cow position:
               
chr1:37706863-37707223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
137, 66
               

               
Conread position:
               
106-370
               

               
Cow position:
               
chr1:77683462-77683193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
165, 93
               

               
Conread position:
               
106-461
               

               
Cow position:
               
chr1:89350075-89349726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
146, 93
               

               
Conread position:
               
109-415
               

               
Cow position:
               
chr1:75142104-75141801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 96
               

               
Conread position:
               
110-244
               

               
Cow position:
               
chr1:102345929-102346058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
112-453
               

               
Cow position:
               
chr1:56635202-56634853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
127, 84
               

               
Conread position:
               
125-469
               

               
Cow position:
               
chr1:4374246-4374597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
127-445
               

               
Cow position:
               
chr1:85597027-85596708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
133-469
               

               
Cow position:
               
chr1:102647190-102647528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 79
               

               
Conread position:
               
148-464
               

               
Cow position:
               
chr1:1991350-1991682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
171-446
               

               
Cow position:
               
chr1:43447784-43448058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
173-451
               

               
Cow position:
               
chr1:31234888-31235175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
184-407
               

               
Cow position:
               
chr1:64421367-64421133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
207-428
               

               
Cow position:
               
chr1:98557769-98558002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
207-536
               

               
Cow position:
               
chr1:38544449-38544775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
207-544
               

               
Cow position:
               
chr1:63905459-63905796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
207-544
               

               
Cow position:
               
chr1:71818446-71818800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
211-462
               

               
Cow position:
               
chr1:56658044-56657789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
245-469
               

               
Cow position:
               
chr1:30882356-30882574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
297-459
               

               
Cow position:
               
chr1:8532306-8532462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
297-544
               

               
Cow position:
               
chr1:56748502-56748267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
302-448
               

               
Cow position:
               
chr1:65638112-65637966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
303-452
               

               
Cow position:
               
chr1:67577971-67577825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
312-542
               

               
Cow position:
               
chr1:32244507-32244716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
326-544
               

               
Cow position:
               
chr1:98023514-98023726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
337-543
               

               
Cow position:
               
chr1:15956611-15956400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 80
               

               
Conread position:
               
349-544
               

               
Cow position:
               
chr1:10881676-10881480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
122, 16
               
Show alignments to all cow chromosomes.