Cow genome map

Conread name: rthg25_c11.y1

Conread position: 1-183
Cow position: chr12:40309491-40309310 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 7, 24

Conread position: 1-225
Cow position: chr12:35469271-35469499 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 115

Conread position: 1-259
Cow position: chr12:40157849-40158102 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 93, 157

Conread position: 1-273
Cow position: chr12:42286143-42285872 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 70, 198

Conread position: 1-352
Cow position: chr12:38774067-38774431 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 96, 8

Conread position: 2-216
Cow position: chr12:39149870-39150096 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 2-360
Cow position: chr12:25280324-25280692 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 263
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 25, 56

Conread position: 3-203
Cow position: chr12:6206511-6206300 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 84, 160

Conread position: 3-317
Cow position: chr12:38126343-38126676 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 219

Conread position: 3-400
Cow position: chr12:4162194-4162606 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 281
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 5, 106

Conread position: 4-209
Cow position: chr12:14223160-14222944 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 4-213
Cow position: chr12:44693376-44693174 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 65

Conread position: 5-202
Cow position: chr12:23714848-23714645 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 5-299
Cow position: chr12:23917015-23916717 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 178

Conread position: 5-469
Cow position: chr12:40910111-40910594 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 19

Conread position: 6-193
Cow position: chr12:26233991-26234184 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 58, 5

Conread position: 6-211
Cow position: chr12:20654308-20654517 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 5

Conread position: 7-190
Cow position: chr12:17701863-17702047 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 120, 0

Conread position: 7-190
Cow position: chr12:42951518-42951706 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 7-197
Cow position: chr12:17273742-17273540 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 7-203
Cow position: chr12:43474932-43474729 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 68

Conread position: 7-211
Cow position: chr12:14987972-14987755 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 80, 5

Conread position: 7-211
Cow position: chr12:17250677-17250476 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 154

Conread position: 7-211
Cow position: chr12:24391488-24391282 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 190

Conread position: 7-215
Cow position: chr12:45782396-45782181 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 90, 211

Conread position: 7-243
Cow position: chr12:6187936-6188180 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 88, 205

Conread position: 7-262
Cow position: chr12:6754365-6754113 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 30, 201

Conread position: 7-262
Cow position: chr12:29966278-29966025 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 179

Conread position: 7-299
Cow position: chr12:12301099-12300795 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 208
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 7

Conread position: 7-379
Cow position: chr12:33851530-33851141 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 274
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 18, 177

Conread position: 7-469
Cow position: chr12:7884508-7884959 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 305
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 80, 17

Conread position: 7-469
Cow position: chr12:25561539-25561067 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 166

Conread position: 7-486
Cow position: chr12:41159754-41159277 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 53

Conread position: 7-544
Cow position: chr12:20479171-20479682 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 71

Conread position: 9-210
Cow position: chr12:44822452-44822258 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 9-268
Cow position: chr12:10827957-10827695 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 82, 204

Conread position: 9-460
Cow position: chr12:9229345-9229777 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 59

Conread position: 10-196
Cow position: chr12:24639798-24639611 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 68, 98

Conread position: 10-230
Cow position: chr12:24166780-24167002 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 81, 20

Conread position: 11-188
Cow position: chr12:30042898-30042709 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 11-209
Cow position: chr12:15389239-15389034 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 82, 0

Conread position: 11-210
Cow position: chr12:22323097-22323313 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 11-213
Cow position: chr12:22752802-22752584 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 201

Conread position: 11-294
Cow position: chr12:21922609-21922333 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 13, 80

Conread position: 11-299
Cow position: chr12:4720114-4719820 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 219
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 13, 205

Conread position: 11-299
Cow position: chr12:37008541-37008826 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 82, 164

Conread position: 11-401
Cow position: chr12:18103447-18103830 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 190

Conread position: 11-461
Cow position: chr12:35368814-35368347 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 96

Conread position: 11-462
Cow position: chr12:43789195-43788733 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 311
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 74, 168

Conread position: 11-469
Cow position: chr12:18518841-18518367 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 311
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 83, 294

Conread position: 12-213
Cow position: chr12:13911408-13911622 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 12-468
Cow position: chr12:30806022-30805552 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 88

Conread position: 14-149
Cow position: chr12:39431735-39431596 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 69, 36

Conread position: 14-209
Cow position: chr12:19007772-19007968 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 96

Conread position: 14-209
Cow position: chr12:43974459-43974256 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 173

Conread position: 14-210
Cow position: chr12:43855056-43854856 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 83, 167

Conread position: 14-213
Cow position: chr12:3586280-3586077 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 69, 36

Conread position: 14-213
Cow position: chr12:17108320-17108118 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 74, 113

Conread position: 14-244
Cow position: chr12:24181309-24181082 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 175

Conread position: 14-272
Cow position: chr12:31883512-31883249 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 73, 163

Conread position: 14-273
Cow position: chr12:21780328-21780068 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 77, 12

Conread position: 14-284
Cow position: chr12:36790647-36790918 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 191
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 75, 192

Conread position: 14-297
Cow position: chr12:33976369-33976076 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 216
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 73, 197

Conread position: 14-394
Cow position: chr12:30210636-30210249 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 77

Conread position: 14-408
Cow position: chr12:34161569-34161174 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 32

Conread position: 14-448
Cow position: chr12:31429426-31429843 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 225, 49

Conread position: 14-460
Cow position: chr12:9914947-9914494 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 63

Conread position: 14-461
Cow position: chr12:20776763-20777225 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 320
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 85, 131

Conread position: 14-462
Cow position: chr12:6241490-6241012 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 198

Conread position: 14-462
Cow position: chr12:35770858-35771330 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 68

Conread position: 14-463
Cow position: chr12:5714784-5714331 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 95

Conread position: 14-469
Cow position: chr12:7960421-7960867 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 12

Conread position: 14-469
Cow position: chr12:30745882-30745409 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 184

Conread position: 14-483
Cow position: chr12:30590935-30590458 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 67

Conread position: 15-201
Cow position: chr12:4801518-4801336 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 180, 75

Conread position: 15-201
Cow position: chr12:6666726-6666545 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 79, 0

Conread position: 15-203
Cow position: chr12:31841735-31841538 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 79, 0

Conread position: 15-213
Cow position: chr12:22859615-22859426 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 51, 56

Conread position: 15-462
Cow position: chr12:19714896-19715324 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 31

Conread position: 15-463
Cow position: chr12:25804980-25805408 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 47

Conread position: 15-466
Cow position: chr12:18123831-18123386 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 189

Conread position: 16-198
Cow position: chr12:35664121-35663937 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 16-255
Cow position: chr12:47267144-47267387 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 197

Conread position: 16-361
Cow position: chr12:4769083-4768726 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 81, 157

Conread position: 16-454
Cow position: chr12:34465854-34466289 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 73

Conread position: 16-463
Cow position: chr12:11836392-11835944 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 16-475
Cow position: chr12:47929355-47928905 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 34

Conread position: 16-482
Cow position: chr12:17031773-17031305 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 138

Conread position: 17-203
Cow position: chr12:24397002-24397194 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 77, 33

Conread position: 17-203
Cow position: chr12:26356545-26356742 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 17-430
Cow position: chr12:42282677-42283102 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 15

Conread position: 17-464
Cow position: chr12:27802896-27803348 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 13

Conread position: 18-206
Cow position: chr12:12699475-12699675 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 18-299
Cow position: chr12:11587931-11587647 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 35

Conread position: 18-384
Cow position: chr12:1889418-1889804 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 264
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 61, 47

Conread position: 18-419
Cow position: chr12:24023649-24024045 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 85

Conread position: 18-428
Cow position: chr12:17624674-17625081 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 289
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 59, 86

Conread position: 18-459
Cow position: chr12:22515575-22516030 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 112

Conread position: 18-462
Cow position: chr12:42180965-42181438 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 325

Conread position: 18-469
Cow position: chr12:17882017-17881568 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 63

Conread position: 19-189
Cow position: chr12:39339871-39339694 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 19-197
Cow position: chr12:45092601-45092421 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 19-202
Cow position: chr12:29731472-29731284 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 19-245
Cow position: chr12:29057551-29057321 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 80, 189

Conread position: 19-250
Cow position: chr12:15496058-15495825 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 181

Conread position: 19-315
Cow position: chr12:4954982-4954696 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 79, 114

Conread position: 19-461
Cow position: chr12:27563218-27563673 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 31

Conread position: 20-194
Cow position: chr12:3057249-3057065 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 22-209
Cow position: chr12:26147010-26147207 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 22-235
Cow position: chr12:25814315-25814090 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 22-299
Cow position: chr12:3623849-3623568 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 73, 192

Conread position: 22-304
Cow position: chr12:23939377-23939100 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 64, 112

Conread position: 22-419
Cow position: chr12:5635294-5635702 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 202

Conread position: 22-480
Cow position: chr12:40110515-40110070 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 326
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 13, 58

Conread position: 23-247
Cow position: chr12:28884941-28885147 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 23-300
Cow position: chr12:24152499-24152210 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 68, 200

Conread position: 23-447
Cow position: chr12:36500790-36501235 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 185

Conread position: 24-213
Cow position: chr12:1701658-1701846 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 25-446
Cow position: chr12:24116218-24116621 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 276
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 104, 66

Conread position: 27-468
Cow position: chr12:4866966-4866513 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 30-207
Cow position: chr12:44542413-44542231 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 31-203
Cow position: chr12:41220864-41221040 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 31-206
Cow position: chr12:38552342-38552161 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 169

Conread position: 31-376
Cow position: chr12:30194842-30194494 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 234
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 67, 19

Conread position: 31-408
Cow position: chr12:23574919-23574527 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 282
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 56, 199

Conread position: 31-410
Cow position: chr12:24211548-24211171 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 157

Conread position: 31-460
Cow position: chr12:31532260-31532696 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 307
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 57, 19

Conread position: 31-469
Cow position: chr12:15122474-15122038 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 305
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 64, 171

Conread position: 38-299
Cow position: chr12:17269943-17269673 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 178
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 200

Conread position: 71-393
Cow position: chr12:27037348-27037677 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 27, 161

Conread position: 77-276
Cow position: chr12:22540301-22540106 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 161, 29

Conread position: 80-477
Cow position: chr12:6210066-6210468 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 132

Conread position: 84-239
Cow position: chr12:15700169-15700017 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 60

Conread position: 84-273
Cow position: chr12:16147576-16147389 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 91, 11

Conread position: 85-203
Cow position: chr12:27430595-27430475 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 85-273
Cow position: chr12:4821047-4820860 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 6

Conread position: 86-469
Cow position: chr12:7978126-7977743 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 94

Conread position: 87-208
Cow position: chr12:18996894-18996774 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 87-209
Cow position: chr12:25456494-25456371 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 87-458
Cow position: chr12:41474175-41473802 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 129

Conread position: 87-462
Cow position: chr12:18572708-18572341 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 26

Conread position: 87-462
Cow position: chr12:30605082-30605453 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 8

Conread position: 87-464
Cow position: chr12:2711581-2711193 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 79, 15

Conread position: 87-469
Cow position: chr12:4341660-4342025 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 8

Conread position: 88-193
Cow position: chr12:23912926-23913032 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 88-462
Cow position: chr12:41581196-41580820 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 280
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 10, 74

Conread position: 90-244
Cow position: chr12:4793278-4793130 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 149, 5

Conread position: 90-469
Cow position: chr12:18943577-18943954 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 14

Conread position: 91-213
Cow position: chr12:26357290-26357410 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 108, 0

Conread position: 91-257
Cow position: chr12:4797381-4797222 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 91-262
Cow position: chr12:3879898-3880066 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 7, 106

Conread position: 91-299
Cow position: chr12:4596546-4596339 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 87

Conread position: 91-313
Cow position: chr12:46120751-46120969 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 182, 105

Conread position: 91-469
Cow position: chr12:31959959-31959589 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 14

Conread position: 92-246
Cow position: chr12:39663120-39663268 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 92-398
Cow position: chr12:28256977-28257287 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 132, 11

Conread position: 92-462
Cow position: chr12:22882135-22881755 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 284
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 148, 26

Conread position: 93-425
Cow position: chr12:5940421-5940083 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 108

Conread position: 93-487
Cow position: chr12:28582430-28582817 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 26

Conread position: 94-469
Cow position: chr12:1773583-1773967 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 272
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 62, 120

Conread position: 95-273
Cow position: chr12:31269231-31269054 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 144, 121

Conread position: 95-442
Cow position: chr12:29779837-29780179 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 173, 114

Conread position: 95-469
Cow position: chr12:30438314-30437947 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 78

Conread position: 96-299
Cow position: chr12:7299383-7299587 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 21, 110

Conread position: 96-427
Cow position: chr12:18765897-18766243 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 253
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 144, 105

Conread position: 96-464
Cow position: chr12:3197344-3196954 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 280
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 175, 73

Conread position: 97-203
Cow position: chr12:44559925-44559819 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 97-204
Cow position: chr12:11106506-11106611 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 97-213
Cow position: chr12:5543721-5543834 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 97-213
Cow position: chr12:27572165-27572281 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 97-214
Cow position: chr12:42143234-42143118 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 79, 0

Conread position: 97-249
Cow position: chr12:36994041-36994188 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 141, 102

Conread position: 97-252
Cow position: chr12:7920317-7920167 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 141, 102

Conread position: 97-274
Cow position: chr12:40200772-40200606 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 97-284
Cow position: chr12:18523644-18523456 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 81, 94

Conread position: 97-299
Cow position: chr12:25188263-25188058 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 142, 112

Conread position: 97-299
Cow position: chr12:44733017-44733218 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 141, 102

Conread position: 97-469
Cow position: chr12:15173898-15173515 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 268
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 168, 102

Conread position: 97-469
Cow position: chr12:33323420-33323802 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 102

Conread position: 97-483
Cow position: chr12:6410659-6411045 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 103

Conread position: 97-544
Cow position: chr12:37993657-37994106 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 98

Conread position: 98-197
Cow position: chr12:43354053-43354152 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 98-207
Cow position: chr12:25596709-25596603 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 98-213
Cow position: chr12:6226073-6226185 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 98-246
Cow position: chr12:7457471-7457611 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 98-263
Cow position: chr12:4135151-4134991 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 141, 101

Conread position: 98-285
Cow position: chr12:45167946-45168126 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 141, 21

Conread position: 98-462
Cow position: chr12:5906130-5905760 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 265
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 143, 101

Conread position: 98-462
Cow position: chr12:42602169-42602533 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 251
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 177, 101

Conread position: 98-464
Cow position: chr12:29483812-29484190 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 262
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 119, 135

Conread position: 98-466
Cow position: chr12:30753793-30753426 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 173, 73

Conread position: 98-481
Cow position: chr12:45820292-45820672 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 140, 101

Conread position: 99-202
Cow position: chr12:26787862-26787761 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 99-299
Cow position: chr12:42234132-42233932 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 140, 17

Conread position: 99-435
Cow position: chr12:25177525-25177864 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 228
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 168, 92

Conread position: 100-299
Cow position: chr12:23855904-23855711 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 139, 24

Conread position: 103-284
Cow position: chr12:42174485-42174313 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 103-464
Cow position: chr12:5801112-5800739 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 106

Conread position: 108-390
Cow position: chr12:18963864-18964154 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 164, 104

Conread position: 110-235
Cow position: chr12:43691354-43691473 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 116-299
Cow position: chr12:29921729-29921909 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 23

Conread position: 119-369
Cow position: chr12:25452394-25452652 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 120, 86

Conread position: 144-469
Cow position: chr12:42061710-42061375 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 218
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 80

Conread position: 186-468
Cow position: chr12:11583376-11583101 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 89, 26

Conread position: 207-459
Cow position: chr12:28650928-28650663 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 148

Conread position: 207-459
Cow position: chr12:32391819-32391551 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 68, 149

Conread position: 207-462
Cow position: chr12:17495237-17495489 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 68, 16

Conread position: 297-543
Cow position: chr12:17708584-17708342 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 68, 175

Conread position: 312-542
Cow position: chr12:12939077-12939292 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 70, 128

Show alignments to all cow chromosomes.