Cow genome map

Conread name: rthg25_c11.y1

Conread position: 2-258
Cow position:
Alignm length: 259
Alignm identity: 180
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 239, 7

Conread position: 2-443
Cow position:
Alignm length: 465
Alignm identity: 300
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 167

Conread position: 2-544
Cow position:
Alignm length: 568
Alignm identity: 367
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 283

Conread position: 3-207
Cow position:
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 9

Conread position: 4-465
Cow position:
Alignm length: 487
Alignm identity: 322
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 58, 199

Conread position: 6-333
Cow position:
Alignm length: 347
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 130

Conread position: 6-379
Cow position:
Alignm length: 377
Alignm identity: 250
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 95, 136

Conread position: 7-203
Cow position:
Alignm length: 197
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 7-211
Cow position:
Alignm length: 211
Alignm identity: 154
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 202

Conread position: 7-290
Cow position:
Alignm length: 287
Alignm identity: 199
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 59, 53

Conread position: 7-297
Cow position:
Alignm length: 308
Alignm identity: 213
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 71, 25

Conread position: 7-299
Cow position:
Alignm length: 309
Alignm identity: 222
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 17, 182

Conread position: 7-453
Cow position:
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 44

Conread position: 7-461
Cow position:
Alignm length: 478
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 145

Conread position: 7-461
Cow position:
Alignm length: 460
Alignm identity: 304
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 17, 45

Conread position: 7-462
Cow position:
Alignm length: 495
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 7-464
Cow position:
Alignm length: 485
Alignm identity: 323
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 215, 43

Conread position: 7-469
Cow position:
Alignm length: 477
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 190

Conread position: 8-188
Cow position:
Alignm length: 182
Alignm identity: 132
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 5, 89

Conread position: 9-361
Cow position:
Alignm length: 374
Alignm identity: 255
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 78, 18

Conread position: 9-469
Cow position:
Alignm length: 486
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 160

Conread position: 10-210
Cow position:
Alignm length: 204
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 16

Conread position: 10-294
Cow position:
Alignm length: 295
Alignm identity: 211
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 15, 174

Conread position: 11-148
Cow position:
Alignm length: 141
Alignm identity: 109
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 11-171
Cow position:
Alignm length: 167
Alignm identity: 124
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 11-184
Cow position:
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 11-239
Cow position:
Alignm length: 231
Alignm identity: 169
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 13, 81

Conread position: 11-487
Cow position:
Alignm length: 496
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 77

Conread position: 13-462
Cow position:
Alignm length: 489
Alignm identity: 328
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 74, 165

Conread position: 14-188
Cow position:
Alignm length: 183
Alignm identity: 136
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 80, 118

Conread position: 14-188
Cow position:
Alignm length: 185
Alignm identity: 140
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 79, 126

Conread position: 14-199
Cow position:
Alignm length: 194
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 14-202
Cow position:
Alignm length: 194
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 81, 0

Conread position: 14-208
Cow position:
Alignm length: 195
Alignm identity: 132
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 14-216
Cow position:
Alignm length: 207
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 47

Conread position: 14-216
Cow position:
Alignm length: 211
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 190

Conread position: 14-308
Cow position:
Alignm length: 301
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 203, 81

Conread position: 14-343
Cow position:
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 192

Conread position: 14-351
Cow position:
Alignm length: 366
Alignm identity: 248
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 179

Conread position: 14-406
Cow position:
Alignm length: 412
Alignm identity: 284
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 10, 37

Conread position: 14-428
Cow position:
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 190

Conread position: 14-432
Cow position:
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 76

Conread position: 14-458
Cow position:
Alignm length: 453
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 56

Conread position: 14-464
Cow position:
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 196

Conread position: 14-464
Cow position:
Alignm length: 460
Alignm identity: 303
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 10, 31

Conread position: 14-477
Cow position:
Alignm length: 485
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 81

Conread position: 15-158
Cow position:
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 15-220
Cow position:
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 129

Conread position: 15-361
Cow position:
Alignm length: 377
Alignm identity: 251
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 84, 56

Conread position: 15-453
Cow position:
Alignm length: 455
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 188

Conread position: 15-462
Cow position:
Alignm length: 458
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 191

Conread position: 15-464
Cow position:
Alignm length: 466
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 191

Conread position: 16-188
Cow position:
Alignm length: 175
Alignm identity: 139
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 69, 0

Conread position: 16-197
Cow position:
Alignm length: 182
Alignm identity: 137
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 71, 0

Conread position: 16-398
Cow position:
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 190

Conread position: 16-452
Cow position:
Alignm length: 449
Alignm identity: 296
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 27, 169

Conread position: 16-462
Cow position:
Alignm length: 456
Alignm identity: 295
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 41, 82

Conread position: 17-158
Cow position:
Alignm length: 142
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 17-185
Cow position:
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 165

Conread position: 17-212
Cow position:
Alignm length: 207
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 17-213
Cow position:
Alignm length: 208
Alignm identity: 161
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 72, 33

Conread position: 17-464
Cow position:
Alignm length: 472
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 143

Conread position: 18-194
Cow position:
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 18-197
Cow position:
Alignm length: 191
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 69, 153

Conread position: 18-299
Cow position:
Alignm length: 298
Alignm identity: 209
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 73, 194

Conread position: 18-465
Cow position:
Alignm length: 481
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 35

Conread position: 18-469
Cow position:
Alignm length: 482
Alignm identity: 319
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 6, 189

Conread position: 18-474
Cow position:
Alignm length: 488
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 89

Conread position: 19-358
Cow position:
Alignm length: 363
Alignm identity: 243
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 76, 127

Conread position: 19-375
Cow position:
Alignm length: 379
Alignm identity: 254
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 185

Conread position: 20-157
Cow position:
Alignm length: 142
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 20-357
Cow position:
Alignm length: 368
Alignm identity: 253
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 73, 187

Conread position: 22-172
Cow position:
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 75, 8

Conread position: 22-196
Cow position:
Alignm length: 178
Alignm identity: 127
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 49, 152

Conread position: 22-210
Cow position:
Alignm length: 199
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 52, 39

Conread position: 22-213
Cow position:
Alignm length: 198
Alignm identity: 146
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 22-237
Cow position:
Alignm length: 227
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 65, 107

Conread position: 22-390
Cow position:
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 88

Conread position: 22-462
Cow position:
Alignm length: 466
Alignm identity: 318
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 67, 103

Conread position: 22-466
Cow position:
Alignm length: 474
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 200

Conread position: 23-472
Cow position:
Alignm length: 467
Alignm identity: 295
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 80

Conread position: 23-482
Cow position:
Alignm length: 484
Alignm identity: 317
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 224

Conread position: 24-298
Cow position:
Alignm length: 290
Alignm identity: 207
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 63, 95

Conread position: 30-245
Cow position:
Alignm length: 224
Alignm identity: 159
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 60, 152

Conread position: 30-274
Cow position:
Alignm length: 262
Alignm identity: 193
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 7, 184

Conread position: 31-230
Cow position:
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 22

Conread position: 38-299
Cow position:
Alignm length: 273
Alignm identity: 178
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 172

Conread position: 38-361
Cow position:
Alignm length: 352
Alignm identity: 245
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 42, 149

Conread position: 50-237
Cow position:
Alignm length: 191
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 152

Conread position: 78-323
Cow position:
Alignm length: 251
Alignm identity: 173
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 127

Conread position: 81-461
Cow position:
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 134

Conread position: 86-299
Cow position:
Alignm length: 218
Alignm identity: 170
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 185, 15

Conread position: 86-300
Cow position:
Alignm length: 222
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 100, 34

Conread position: 86-461
Cow position:
Alignm length: 407
Alignm identity: 288
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 13, 106

Conread position: 87-211
Cow position:
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 87-256
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 113

Conread position: 87-276
Cow position:
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 113

Conread position: 87-313
Cow position:
Alignm length: 234
Alignm identity: 176
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 127, 221

Conread position: 87-462
Cow position:
Alignm length: 392
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 112

Conread position: 88-213
Cow position:
Alignm length: 127
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 90-361
Cow position:
Alignm length: 294
Alignm identity: 210
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 7, 116

Conread position: 91-246
Cow position:
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 7, 143

Conread position: 91-307
Cow position:
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 99

Conread position: 91-448
Cow position:
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 119

Conread position: 91-462
Cow position:
Alignm length: 389
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 75

Conread position: 91-544
Cow position:
Alignm length: 471
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 67

Conread position: 92-403
Cow position:
Alignm length: 333
Alignm identity: 227
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 107, 287

Conread position: 93-463
Cow position:
Alignm length: 391
Alignm identity: 266
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 5, 104

Conread position: 94-282
Cow position:
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 151, 57

Conread position: 96-464
Cow position:
Alignm length: 396
Alignm identity: 261
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 82

Conread position: 96-483
Cow position:
Alignm length: 400
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 100

Conread position: 97-197
Cow position:
Alignm length: 101
Alignm identity: 83
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 97-228
Cow position:
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 124, 0

Conread position: 97-273
Cow position:
Alignm length: 177
Alignm identity: 147
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 99, 0

Conread position: 97-313
Cow position:
Alignm length: 223
Alignm identity: 165
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 174, 44

Conread position: 97-397
Cow position:
Alignm length: 319
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 103

Conread position: 97-398
Cow position:
Alignm length: 313
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 142, 102

Conread position: 97-443
Cow position:
Alignm length: 364
Alignm identity: 252
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 173, 68

Conread position: 97-462
Cow position:
Alignm length: 382
Alignm identity: 265
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 149, 53

Conread position: 97-464
Cow position:
Alignm length: 392
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 118

Conread position: 97-469
Cow position:
Alignm length: 393
Alignm identity: 265
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 144, 78

Conread position: 97-542
Cow position:
Alignm length: 450
Alignm identity: 299
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 22, 28

Conread position: 98-298
Cow position:
Alignm length: 204
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 143, 75

Conread position: 98-299
Cow position:
Alignm length: 207
Alignm identity: 157
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 63, 20

Conread position: 98-343
Cow position:
Alignm length: 252
Alignm identity: 171
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 85

Conread position: 98-399
Cow position:
Alignm length: 306
Alignm identity: 220
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 19, 119

Conread position: 99-461
Cow position:
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 109

Conread position: 100-299
Cow position:
Alignm length: 204
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 171, 99

Conread position: 100-468
Cow position:
Alignm length: 393
Alignm identity: 269
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 139, 97

Conread position: 100-469
Cow position:
Alignm length: 391
Alignm identity: 271
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 21, 33

Conread position: 101-375
Cow position:
Alignm length: 294
Alignm identity: 217
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 138, 32

Conread position: 108-473
Cow position:
Alignm length: 369
Alignm identity: 260
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 50, 70

Conread position: 109-263
Cow position:
Alignm length: 155
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 0

Conread position: 116-540
Cow position:
Alignm length: 433
Alignm identity: 279
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 121, 8

Conread position: 134-544
Cow position:
Alignm length: 439
Alignm identity: 282
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 139, 12

Conread position: 141-447
Cow position:
Alignm length: 325
Alignm identity: 238
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 130, 58

Conread position: 154-469
Cow position:
Alignm length: 329
Alignm identity: 216
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 101

Conread position: 177-469
Cow position:
Alignm length: 307
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 97, 22

Conread position: 182-460
Cow position:
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 15

Conread position: 203-462
Cow position:
Alignm length: 276
Alignm identity: 193
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 11, 180

Conread position: 297-469
Cow position:
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 317-544
Cow position:
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 7

Show alignments to all cow chromosomes.