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Cow genome map

           
Conread name:
           
rthg25_c11.y1
        

               
Conread position:
               
1-299
               

               
Cow position:
               
chr27:16965311-16965617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
9, 213
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr27:26481456-26481239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr27:27438770-27438339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
17, 176
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chr27:6162662-6162451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr27:19452738-19452991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr27:26437379-26437105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
3-456
               

               
Cow position:
               
chr27:19387762-19388228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr27:23495954-23495777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
4-542
               

               
Cow position:
               
chr27:21578813-21578312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 10
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr27:11982903-11982635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
6-202
               

               
Cow position:
               
chr27:19576578-19576375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:28896621-28896894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
25, 206
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr27:20283389-20283844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
7-197
               

               
Cow position:
               
chr27:16047742-16047555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
7-213
               

               
Cow position:
               
chr27:20484477-20484687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 198
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr27:8790996-8790755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 5
               

               
Conread position:
               
7-273
               

               
Cow position:
               
chr27:26794039-26793774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 118
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr27:20812669-20812938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr27:23560284-23559988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
90, 198
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr27:29380606-29380900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr27:30872313-30871897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
20, 200
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr27:20749260-20748858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 173
               

               
Conread position:
               
7-438
               

               
Cow position:
               
chr27:14937667-14937237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr27:24341665-24342117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
7-462
               

               
Cow position:
               
chr27:7935411-7934948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr27:1353325-1353805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr27:8962496-8962047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr27:26428383-26427906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 215
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr27:29388418-29388653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
76, 202
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr27:13607918-13607638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
230, 66
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr27:28260772-28260470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
232, 16
               

               
Conread position:
               
8-452
               

               
Cow position:
               
chr27:20354347-20354785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
8-460
               

               
Cow position:
               
chr27:8062605-8062145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
8-462
               

               
Cow position:
               
chr27:23128212-23128669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
10-194
               

               
Cow position:
               
chr27:20888483-20888660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr27:29319153-29319396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
10-408
               

               
Cow position:
               
chr27:29431224-29431622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 192
               

               
Conread position:
               
11-207
               

               
Cow position:
               
chr27:26400969-26400768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
11-209
               

               
Cow position:
               
chr27:4414066-4413863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
11-209
               

               
Cow position:
               
chr27:26121506-26121715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
11-253
               

               
Cow position:
               
chr27:28478332-28478572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 190
               

               
Conread position:
               
11-454
               

               
Cow position:
               
chr27:30914755-30915208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 183
               

               
Conread position:
               
11-458
               

               
Cow position:
               
chr27:22171050-22171509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 171
               

               
Conread position:
               
11-459
               

               
Cow position:
               
chr27:22220299-22220766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
11-469
               

               
Cow position:
               
chr27:26424827-26424367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
12-170
               

               
Cow position:
               
chr27:67987-68142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
12-193
               

               
Cow position:
               
chr27:21951230-21951039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
12-361
               

               
Cow position:
               
chr27:27442410-27442052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
12-418
               

               
Cow position:
               
chr27:15409275-15408872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
230, 75
               

               
Conread position:
               
12-437
               

               
Cow position:
               
chr27:19589232-19589669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
13-245
               

               
Cow position:
               
chr27:16512416-16512185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 193
               

               
Conread position:
               
14-157
               

               
Cow position:
               
chr27:21448070-21447926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
14-161
               

               
Cow position:
               
chr27:20561340-20561489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
14-196
               

               
Cow position:
               
chr27:22792590-22792774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
14-200
               

               
Cow position:
               
chr27:3498308-3498498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
14-207
               

               
Cow position:
               
chr27:31248854-31248660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
79, 164
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr27:4411939-4411756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr27:13940799-13940602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr27:15332537-15332340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
14-226
               

               
Cow position:
               
chr27:12284746-12284967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 138
               

               
Conread position:
               
14-237
               

               
Cow position:
               
chr27:27648563-27648335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
81, 207
               

               
Conread position:
               
14-273
               

               
Cow position:
               
chr27:2847625-2847867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
225, 55
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr27:6924833-6925133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 202
               

               
Conread position:
               
14-302
               

               
Cow position:
               
chr27:26112166-26111868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 196
               

               
Conread position:
               
14-390
               

               
Cow position:
               
chr27:426722-427116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 167
               

               
Conread position:
               
14-407
               

               
Cow position:
               
chr27:3306538-3306936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
257, 69
               

               
Conread position:
               
14-460
               

               
Cow position:
               
chr27:2957169-2957621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr27:30868999-30868525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 204
               

               
Conread position:
               
14-468
               

               
Cow position:
               
chr27:23632361-23632821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 46
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr27:28206556-28207020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 175
               

               
Conread position:
               
14-479
               

               
Cow position:
               
chr27:8430668-8430208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
15-198
               

               
Cow position:
               
chr27:19557143-19557332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
18, 184
               

               
Conread position:
               
15-209
               

               
Cow position:
               
chr27:23527068-23527268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 121
               

               
Conread position:
               
15-213
               

               
Cow position:
               
chr27:20548563-20548770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
15-246
               

               
Cow position:
               
chr27:18435377-18435148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 189
               

               
Conread position:
               
15-270
               

               
Cow position:
               
chr27:31210303-31210559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
15-355
               

               
Cow position:
               
chr27:26226535-26226178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
80, 114
               

               
Conread position:
               
15-432
               

               
Cow position:
               
chr27:13251784-13252195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
15-445
               

               
Cow position:
               
chr27:22330905-22330472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
164, 268
               

               
Conread position:
               
15-461
               

               
Cow position:
               
chr27:23918281-23917843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 266
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr27:28018076-28018552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 267
               

               
Conread position:
               
15-464
               

               
Cow position:
               
chr27:17472566-17473030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
15-469
               

               
Cow position:
               
chr27:22035618-22035151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 186
               

               
Conread position:
               
16-207
               

               
Cow position:
               
chr27:26118251-26118453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
16-216
               

               
Cow position:
               
chr27:25790057-25790254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
16-263
               

               
Cow position:
               
chr27:22245396-22245630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
16-437
               

               
Cow position:
               
chr27:16705007-16705437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 223
               

               
Conread position:
               
16-461
               

               
Cow position:
               
chr27:22439891-22440356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
16-469
               

               
Cow position:
               
chr27:7412148-7412605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 259
               

               
Conread position:
               
16-469
               

               
Cow position:
               
chr27:26643457-26643895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
224, 37
               

               
Conread position:
               
16-469
               

               
Cow position:
               
chr27:26984108-26984564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
17-175
               

               
Cow position:
               
chr27:4195310-4195468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 59
               

               
Conread position:
               
17-209
               

               
Cow position:
               
chr27:5539937-5539740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
17-251
               

               
Cow position:
               
chr27:31386875-31386639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
78, 189
               

               
Conread position:
               
17-299
               

               
Cow position:
               
chr27:5553227-5553509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
17-308
               

               
Cow position:
               
chr27:212706-213013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 195
               

               
Conread position:
               
17-345
               

               
Cow position:
               
chr27:4858863-4858544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
228, 13
               

               
Conread position:
               
17-469
               

               
Cow position:
               
chr27:25809761-25809301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 165
               

               
Conread position:
               
17-469
               

               
Cow position:
               
chr27:28932047-28931565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 177
               

               
Conread position:
               
17-483
               

               
Cow position:
               
chr27:2592292-2592776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 196
               

               
Conread position:
               
17-544
               

               
Cow position:
               
chr27:4390501-4389948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
17-544
               

               
Cow position:
               
chr27:27558751-27558239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 150
               

               
Conread position:
               
18-189
               

               
Cow position:
               
chr27:22497784-22497957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
18-197
               

               
Cow position:
               
chr27:20048392-20048577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
18-213
               

               
Cow position:
               
chr27:6319679-6319878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
18-217
               

               
Cow position:
               
chr27:21419427-21419229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
18-299
               

               
Cow position:
               
chr27:31151140-31151421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
18-410
               

               
Cow position:
               
chr27:24477182-24477580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 71
               

               
Conread position:
               
18-460
               

               
Cow position:
               
chr27:16786587-16787040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 99
               

               
Conread position:
               
18-462
               

               
Cow position:
               
chr27:12515950-12516414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 166
               

               
Conread position:
               
18-464
               

               
Cow position:
               
chr27:29039165-29038723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
215, 45
               

               
Conread position:
               
18-465
               

               
Cow position:
               
chr27:18543744-18544216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
76, 182
               

               
Conread position:
               
18-468
               

               
Cow position:
               
chr27:6541390-6541846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 309
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr27:15315279-15315711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr27:28922139-28921674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 158
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr27:29494142-29493695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
19-187
               

               
Cow position:
               
chr27:26983920-26984095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
19-273
               

               
Cow position:
               
chr27:16275923-16275647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
19-406
               

               
Cow position:
               
chr27:11480881-11480470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
69, 363
               

               
Conread position:
               
19-445
               

               
Cow position:
               
chr27:28002047-28001620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 109
               

               
Conread position:
               
19-462
               

               
Cow position:
               
chr27:31373215-31372764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
118, 84
               

               
Conread position:
               
19-464
               

               
Cow position:
               
chr27:15926553-15926989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 86
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chr27:1637169-1636722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 76
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chr27:18507402-18507854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 191
               

               
Conread position:
               
19-475
               

               
Cow position:
               
chr27:10307546-10307068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 155
               

               
Conread position:
               
20-209
               

               
Cow position:
               
chr27:13255035-13254842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
20-319
               

               
Cow position:
               
chr27:22386646-22386933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
20-460
               

               
Cow position:
               
chr27:20637300-20636868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 104
               

               
Conread position:
               
20-465
               

               
Cow position:
               
chr27:18558116-18558582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 161
               

               
Conread position:
               
22-208
               

               
Cow position:
               
chr27:17102660-17102850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 120
               

               
Conread position:
               
22-273
               

               
Cow position:
               
chr27:25151849-25152096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 128
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr27:19083938-19083638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
162, 48
               

               
Conread position:
               
23-295
               

               
Cow position:
               
chr27:12459049-12459321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
23-542
               

               
Cow position:
               
chr27:12596543-12597063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 156
               

               
Conread position:
               
24-209
               

               
Cow position:
               
chr27:18791752-18791554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
24-299
               

               
Cow position:
               
chr27:15865372-15865655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
70, 180
               

               
Conread position:
               
24-432
               

               
Cow position:
               
chr27:10992136-10992539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 63
               

               
Conread position:
               
29-469
               

               
Cow position:
               
chr27:21393726-21393282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 56
               

               
Conread position:
               
30-469
               

               
Cow position:
               
chr27:7959063-7958613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 98
               

               
Conread position:
               
31-203
               

               
Cow position:
               
chr27:26909819-26909641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
31-227
               

               
Cow position:
               
chr27:232320-232527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr27:29841951-29841687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
31-442
               

               
Cow position:
               
chr27:23554560-23554124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 133
               

               
Conread position:
               
35-412
               

               
Cow position:
               
chr27:23890706-23891104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
35-466
               

               
Cow position:
               
chr27:28518066-28518504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 180
               

               
Conread position:
               
35-486
               

               
Cow position:
               
chr27:19660701-19661181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 192
               

               
Conread position:
               
53-462
               

               
Cow position:
               
chr27:1768831-1768420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 148
               

               
Conread position:
               
54-458
               

               
Cow position:
               
chr27:30582529-30582949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
78-299
               

               
Cow position:
               
chr27:15215050-15215277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 125
               

               
Conread position:
               
81-273
               

               
Cow position:
               
chr27:2034336-2034527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
84-463
               

               
Cow position:
               
chr27:27064610-27064224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 127
               

               
Conread position:
               
84-469
               

               
Cow position:
               
chr27:26413425-26413033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 114
               

               
Conread position:
               
85-462
               

               
Cow position:
               
chr27:27039005-27038629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
161, 10
               

               
Conread position:
               
87-196
               

               
Cow position:
               
chr27:6522650-6522759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
87-210
               

               
Cow position:
               
chr27:27255820-27255944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
87-272
               

               
Cow position:
               
chr27:20584619-20584444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
87-469
               

               
Cow position:
               
chr27:6550298-6550673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 8
               

               
Conread position:
               
88-359
               

               
Cow position:
               
chr27:20901396-20901678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 7
               

               
Conread position:
               
90-299
               

               
Cow position:
               
chr27:20803825-20803613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
90-299
               

               
Cow position:
               
chr27:22559988-22559780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
90-462
               

               
Cow position:
               
chr27:4386226-4385850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 110
               

               
Conread position:
               
91-202
               

               
Cow position:
               
chr27:29658876-29658767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
91-213
               

               
Cow position:
               
chr27:27673179-27673057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
91-247
               

               
Cow position:
               
chr27:30908510-30908659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
91-318
               

               
Cow position:
               
chr27:6302631-6302400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
91-380
               

               
Cow position:
               
chr27:22423353-22423633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
180, 108
               

               
Conread position:
               
91-414
               

               
Cow position:
               
chr27:15643011-15643343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
91-439
               

               
Cow position:
               
chr27:30988634-30988991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
91-453
               

               
Cow position:
               
chr27:25276980-25277341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
148, 84
               

               
Conread position:
               
91-458
               

               
Cow position:
               
chr27:30359243-30359606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 109
               

               
Conread position:
               
91-462
               

               
Cow position:
               
chr27:22723856-22723491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 176
               

               
Conread position:
               
93-458
               

               
Cow position:
               
chr27:15925186-15925546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
178, 10
               

               
Conread position:
               
94-357
               

               
Cow position:
               
chr27:20045734-20046000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
94-369
               

               
Cow position:
               
chr27:8168590-8168303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 103
               

               
Conread position:
               
95-256
               

               
Cow position:
               
chr27:30998404-30998248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 65
               

               
Conread position:
               
95-297
               

               
Cow position:
               
chr27:21453253-21453055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
95-466
               

               
Cow position:
               
chr27:536306-536676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
96-297
               

               
Cow position:
               
chr27:10653527-10653728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
143, 114
               

               
Conread position:
               
96-389
               

               
Cow position:
               
chr27:16589859-16589570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
97-209
               

               
Cow position:
               
chr27:23216473-23216364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
97-210
               

               
Cow position:
               
chr27:17918874-17918761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-210
               

               
Cow position:
               
chr27:22153702-22153815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-253
               

               
Cow position:
               
chr27:23545487-23545336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 103
               

               
Conread position:
               
97-284
               

               
Cow position:
               
chr27:14303581-14303759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
97-284
               

               
Cow position:
               
chr27:17918470-17918290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
97-307
               

               
Cow position:
               
chr27:29236407-29236630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
97-333
               

               
Cow position:
               
chr27:26188673-26188912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 85
               

               
Conread position:
               
97-460
               

               
Cow position:
               
chr27:22454933-22454565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
97-461
               

               
Cow position:
               
chr27:24331564-24331940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 99
               

               
Conread position:
               
97-462
               

               
Cow position:
               
chr27:20795636-20795999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
139, 77
               

               
Conread position:
               
97-462
               

               
Cow position:
               
chr27:24227956-24227578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
97-542
               

               
Cow position:
               
chr27:25998545-25999008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
98-299
               

               
Cow position:
               
chr27:31017981-31017790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr27:12191635-12191385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
11, 108
               

               
Conread position:
               
98-355
               

               
Cow position:
               
chr27:24371087-24371347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
164, 49
               

               
Conread position:
               
99-272
               

               
Cow position:
               
chr27:1789293-1789123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 105
               

               
Conread position:
               
99-475
               

               
Cow position:
               
chr27:30764881-30765259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 42
               

               
Conread position:
               
105-462
               

               
Cow position:
               
chr27:30354493-30354130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 107
               

               
Conread position:
               
106-299
               

               
Cow position:
               
chr27:20497058-20497256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
106-314
               

               
Cow position:
               
chr27:29184985-29184780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
134, 104
               

               
Conread position:
               
109-208
               

               
Cow position:
               
chr27:23758688-23758589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
115-314
               

               
Cow position:
               
chr27:62519-62718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
82, 130
               

               
Conread position:
               
207-469
               

               
Cow position:
               
chr27:14902706-14902427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
32, 143
               

               
Conread position:
               
207-469
               

               
Cow position:
               
chr27:26398311-26398037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
207-479
               

               
Cow position:
               
chr27:27259561-27259839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
213-462
               

               
Cow position:
               
chr27:27141555-27141807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 109
               

               
Conread position:
               
237-456
               

               
Cow position:
               
chr27:13197897-13198125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
292-452
               

               
Cow position:
               
chr27:190758-190918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
297-450
               

               
Cow position:
               
chr27:26625180-26625329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
137, 44
               

               
Conread position:
               
297-458
               

               
Cow position:
               
chr27:13317904-13317743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
297-469
               

               
Cow position:
               
chr27:27521954-27521782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.