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Cow genome map

           
Conread name:
           
rthg25_c11.y1
        

               
Conread position:
               
1-217
               

               
Cow position:
               
chr29:17436962-17436742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr29:32894474-32894182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
23, 202
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr29:3711592-3711161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 150
               

               
Conread position:
               
2-149
               

               
Cow position:
               
chr29:31593942-31594087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chr29:26211269-26211046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr29:4070835-4070587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 177
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr29:22518906-22519189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
48, 143
               

               
Conread position:
               
2-464
               

               
Cow position:
               
chr29:16657905-16657429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr29:10191830-10192013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr29:23825875-23825611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
155, 11
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chr29:28994070-28993754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 212
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr29:24660889-24660684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr29:29308370-29308576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
5-462
               

               
Cow position:
               
chr29:4121068-4120586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 205
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr29:1933357-1933825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 63
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr29:23678911-23678742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
7-209
               

               
Cow position:
               
chr29:14577067-14576858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
7-209
               

               
Cow position:
               
chr29:16200266-16200479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chr29:31651612-31651387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 104
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr29:22720437-22720686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 210
               

               
Conread position:
               
7-323
               

               
Cow position:
               
chr29:12625788-12626092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
231, 83
               

               
Conread position:
               
7-356
               

               
Cow position:
               
chr29:12025269-12025629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
7-394
               

               
Cow position:
               
chr29:22028751-22029137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
91, 171
               

               
Conread position:
               
7-441
               

               
Cow position:
               
chr29:34773538-34773968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
7-458
               

               
Cow position:
               
chr29:11366423-11365991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
233, 17
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr29:34297360-34297823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 215
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr29:23874672-23874189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 200
               

               
Conread position:
               
7-488
               

               
Cow position:
               
chr29:41531061-41530563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 122
               

               
Conread position:
               
8-299
               

               
Cow position:
               
chr29:37618520-37618217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 190
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr29:15947379-15947070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
16, 206
               

               
Conread position:
               
8-466
               

               
Cow position:
               
chr29:29057383-29056919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 31
               

               
Conread position:
               
9-196
               

               
Cow position:
               
chr29:26208167-26207987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
10-447
               

               
Cow position:
               
chr29:35458561-35459016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 165
               

               
Conread position:
               
10-460
               

               
Cow position:
               
chr29:8669563-8669097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
26, 140
               

               
Conread position:
               
10-469
               

               
Cow position:
               
chr29:26017292-26017778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 208
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chr29:31221949-31221742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr29:5789221-5788995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
11-272
               

               
Cow position:
               
chr29:42630324-42630063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
11-404
               

               
Cow position:
               
chr29:26259683-26259273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 227
               

               
Conread position:
               
11-462
               

               
Cow position:
               
chr29:35292293-35291839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 206
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chr29:501404-501202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
12-273
               

               
Cow position:
               
chr29:30350746-30350994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
12-299
               

               
Cow position:
               
chr29:22721559-22721284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
13-208
               

               
Cow position:
               
chr29:19420416-19420613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
13-462
               

               
Cow position:
               
chr29:19762467-19762012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 53
               

               
Conread position:
               
14-193
               

               
Cow position:
               
chr29:22576974-22577164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
14-195
               

               
Cow position:
               
chr29:14746982-14746793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
14-197
               

               
Cow position:
               
chr29:43088509-43088322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 168
               

               
Conread position:
               
14-199
               

               
Cow position:
               
chr29:10203972-10203781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr29:684974-685168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 92
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr29:38754734-38754934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
14-210
               

               
Cow position:
               
chr29:4023198-4023002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
14-212
               

               
Cow position:
               
chr29:35189813-35189604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
10, 189
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr29:16279180-16278983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
83, 106
               

               
Conread position:
               
14-282
               

               
Cow position:
               
chr29:31092652-31092385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
14-287
               

               
Cow position:
               
chr29:27911796-27911519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 149
               

               
Conread position:
               
14-287
               

               
Cow position:
               
chr29:27926978-27926702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 148
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr29:6208244-6207979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
233, 50
               

               
Conread position:
               
14-327
               

               
Cow position:
               
chr29:7310866-7310566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
278, 80
               

               
Conread position:
               
14-437
               

               
Cow position:
               
chr29:23698173-23697743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
14-445
               

               
Cow position:
               
chr29:4520535-4520092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr29:36531069-36530603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 195
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr29:30366852-30367290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
14-542
               

               
Cow position:
               
chr29:2623277-2623819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 89
               

               
Conread position:
               
15-213
               

               
Cow position:
               
chr29:31934578-31934374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
15-258
               

               
Cow position:
               
chr29:31982022-31981786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
224, 11
               

               
Conread position:
               
15-369
               

               
Cow position:
               
chr29:4085498-4085148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
263, 67
               

               
Conread position:
               
15-461
               

               
Cow position:
               
chr29:732812-732363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
15-461
               

               
Cow position:
               
chr29:29769152-29769605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
76, 186
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr29:34359622-34360054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 190
               

               
Conread position:
               
15-469
               

               
Cow position:
               
chr29:2644119-2644572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 67
               

               
Conread position:
               
15-469
               

               
Cow position:
               
chr29:9709895-9709432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
73, 191
               

               
Conread position:
               
16-174
               

               
Cow position:
               
chr29:2219588-2219421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
16-183
               

               
Cow position:
               
chr29:22652520-22652348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
16-193
               

               
Cow position:
               
chr29:37293228-37293054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
16-202
               

               
Cow position:
               
chr29:19363909-19363717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
16-273
               

               
Cow position:
               
chr29:20167624-20167363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
16-273
               

               
Cow position:
               
chr29:43183116-43183369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
16-285
               

               
Cow position:
               
chr29:17236623-17236365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
81, 110
               

               
Conread position:
               
16-298
               

               
Cow position:
               
chr29:18449937-18450221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
79, 197
               

               
Conread position:
               
16-402
               

               
Cow position:
               
chr29:11434313-11433922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 42
               

               
Conread position:
               
16-414
               

               
Cow position:
               
chr29:6337851-6337450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
16-432
               

               
Cow position:
               
chr29:10153611-10154019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
199, 53
               

               
Conread position:
               
16-445
               

               
Cow position:
               
chr29:10653523-10653104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 86
               

               
Conread position:
               
16-458
               

               
Cow position:
               
chr29:32963724-32963298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
16-464
               

               
Cow position:
               
chr29:24624442-24623979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
16-469
               

               
Cow position:
               
chr29:19428851-19428401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr29:26540340-26540529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
17-213
               

               
Cow position:
               
chr29:19176715-19176918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
17-263
               

               
Cow position:
               
chr29:35259181-35258933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
17-299
               

               
Cow position:
               
chr29:8862299-8862567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
254, 46
               

               
Conread position:
               
17-469
               

               
Cow position:
               
chr29:27816536-27816106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
237, 62
               

               
Conread position:
               
18-201
               

               
Cow position:
               
chr29:4648013-4648202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
18-216
               

               
Cow position:
               
chr29:1959756-1959953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 57
               

               
Conread position:
               
18-247
               

               
Cow position:
               
chr29:24187864-24188099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 197
               

               
Conread position:
               
18-299
               

               
Cow position:
               
chr29:2056259-2055969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 189
               

               
Conread position:
               
18-343
               

               
Cow position:
               
chr29:35084024-35084368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 42
               

               
Conread position:
               
18-398
               

               
Cow position:
               
chr29:28979317-28979676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
257, 29
               

               
Conread position:
               
18-412
               

               
Cow position:
               
chr29:26275800-26275403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
18-415
               

               
Cow position:
               
chr29:22777982-22778395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
18-419
               

               
Cow position:
               
chr29:35677341-35677762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
6, 356
               

               
Conread position:
               
18-452
               

               
Cow position:
               
chr29:11916020-11915567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
18-460
               

               
Cow position:
               
chr29:31929185-31928721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr29:21196453-21196917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 196
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr29:31786873-31786411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
56, 228
               

               
Conread position:
               
19-149
               

               
Cow position:
               
chr29:9149352-9149479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
19-184
               

               
Cow position:
               
chr29:936401-936231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
19-205
               

               
Cow position:
               
chr29:9622510-9622690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
180, 77
               

               
Conread position:
               
19-207
               

               
Cow position:
               
chr29:19187224-19187027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
19-213
               

               
Cow position:
               
chr29:32655895-32656097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
19-245
               

               
Cow position:
               
chr29:396600-396381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 162
               

               
Conread position:
               
19-249
               

               
Cow position:
               
chr29:5520286-5520521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
19-273
               

               
Cow position:
               
chr29:5408944-5409199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
19-321
               

               
Cow position:
               
chr29:3685323-3685622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
112, 140
               

               
Conread position:
               
19-389
               

               
Cow position:
               
chr29:14838609-14838998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 179
               

               
Conread position:
               
19-418
               

               
Cow position:
               
chr29:31489522-31489103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
74, 219
               

               
Conread position:
               
19-460
               

               
Cow position:
               
chr29:706777-707203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chr29:28775278-28775721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 53
               

               
Conread position:
               
19-470
               

               
Cow position:
               
chr29:28195335-28195787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 71
               

               
Conread position:
               
20-213
               

               
Cow position:
               
chr29:8163630-8163832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
67, 190
               

               
Conread position:
               
20-299
               

               
Cow position:
               
chr29:5046850-5046563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
20-458
               

               
Cow position:
               
chr29:17222613-17222152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
22-215
               

               
Cow position:
               
chr29:8634847-8634647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
75, 53
               

               
Conread position:
               
22-464
               

               
Cow position:
               
chr29:24952882-24952424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 130
               

               
Conread position:
               
23-202
               

               
Cow position:
               
chr29:26539425-26539241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
23-213
               

               
Cow position:
               
chr29:3293137-3292943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 92
               

               
Conread position:
               
24-405
               

               
Cow position:
               
chr29:17154955-17154572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
24-415
               

               
Cow position:
               
chr29:30441132-30440712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
24-460
               

               
Cow position:
               
chr29:40117758-40117314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 128
               

               
Conread position:
               
24-469
               

               
Cow position:
               
chr29:7955795-7956251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 129
               

               
Conread position:
               
29-247
               

               
Cow position:
               
chr29:40791485-40791277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 150
               

               
Conread position:
               
29-456
               

               
Cow position:
               
chr29:39111136-39111562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 87
               

               
Conread position:
               
30-197
               

               
Cow position:
               
chr29:17804717-17804546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
65, 128
               

               
Conread position:
               
30-219
               

               
Cow position:
               
chr29:23913210-23913404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
30-270
               

               
Cow position:
               
chr29:4423263-4423496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 60
               

               
Conread position:
               
30-469
               

               
Cow position:
               
chr29:18878295-18878768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
33-254
               

               
Cow position:
               
chr29:5769975-5769755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr29:43544423-43544662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 171
               

               
Conread position:
               
35-466
               

               
Cow position:
               
chr29:31926135-31926554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 54
               

               
Conread position:
               
38-216
               

               
Cow position:
               
chr29:2135349-2135531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
38-256
               

               
Cow position:
               
chr29:23825033-23825252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
53, 168
               

               
Conread position:
               
38-390
               

               
Cow position:
               
chr29:44988625-44988970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
235, 65
               

               
Conread position:
               
38-469
               

               
Cow position:
               
chr29:36632681-36633101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
53, 175
               

               
Conread position:
               
39-181
               

               
Cow position:
               
chr29:28257320-28257168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
53-461
               

               
Cow position:
               
chr29:21443172-21443603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 168
               

               
Conread position:
               
57-465
               

               
Cow position:
               
chr29:37599074-37599467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
220, 33
               

               
Conread position:
               
75-462
               

               
Cow position:
               
chr29:7665882-7666289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
78-193
               

               
Cow position:
               
chr29:1402900-1402781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
79-437
               

               
Cow position:
               
chr29:6286033-6286393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 24
               

               
Conread position:
               
80-215
               

               
Cow position:
               
chr29:31211750-31211610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 120
               

               
Conread position:
               
84-393
               

               
Cow position:
               
chr29:32210946-32211251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
85-357
               

               
Cow position:
               
chr29:26416473-26416201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
86-419
               

               
Cow position:
               
chr29:38581101-38580759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 85
               

               
Conread position:
               
87-187
               

               
Cow position:
               
chr29:29263425-29263322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
87-210
               

               
Cow position:
               
chr29:24051258-24051383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
87-213
               

               
Cow position:
               
chr29:1220009-1220136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr29:11647216-11646940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 163
               

               
Conread position:
               
87-488
               

               
Cow position:
               
chr29:13028562-13028168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
88-213
               

               
Cow position:
               
chr29:19244339-19244464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
88-460
               

               
Cow position:
               
chr29:25333342-25333711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 7
               

               
Conread position:
               
88-475
               

               
Cow position:
               
chr29:40298901-40299286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 7
               

               
Conread position:
               
89-208
               

               
Cow position:
               
chr29:19059965-19060082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
90-399
               

               
Cow position:
               
chr29:11053741-11054051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
90-449
               

               
Cow position:
               
chr29:44378300-44378665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
90-460
               

               
Cow position:
               
chr29:22936388-22936023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 5
               

               
Conread position:
               
90-464
               

               
Cow position:
               
chr29:7966364-7965991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
130, 153
               

               
Conread position:
               
91-196
               

               
Cow position:
               
chr29:33393796-33393690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
91-200
               

               
Cow position:
               
chr29:29940758-29940647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
91-247
               

               
Cow position:
               
chr29:42883839-42883991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
91-284
               

               
Cow position:
               
chr29:32926222-32926026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr29:847524-847730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
91-330
               

               
Cow position:
               
chr29:40994773-40995015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
91-458
               

               
Cow position:
               
chr29:8926343-8926715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 109
               

               
Conread position:
               
91-461
               

               
Cow position:
               
chr29:6844514-6844888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 110
               

               
Conread position:
               
91-462
               

               
Cow position:
               
chr29:32799595-32799963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 83
               

               
Conread position:
               
92-413
               

               
Cow position:
               
chr29:26653929-26654252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
209, 11
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr29:33548110-33548402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
93-488
               

               
Cow position:
               
chr29:12783850-12784243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 11
               

               
Conread position:
               
94-273
               

               
Cow position:
               
chr29:7103672-7103496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
144, 110
               

               
Conread position:
               
94-273
               

               
Cow position:
               
chr29:18404003-18404174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
94-328
               

               
Cow position:
               
chr29:2262881-2263111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
145, 81
               

               
Conread position:
               
94-437
               

               
Cow position:
               
chr29:27858901-27858556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
145, 86
               

               
Conread position:
               
94-453
               

               
Cow position:
               
chr29:5892959-5892596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 105
               

               
Conread position:
               
94-469
               

               
Cow position:
               
chr29:12310122-12309730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
130, 350
               

               
Conread position:
               
95-298
               

               
Cow position:
               
chr29:31814052-31813860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
95-390
               

               
Cow position:
               
chr29:4334831-4334539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
96-469
               

               
Cow position:
               
chr29:40583897-40583530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
175, 17
               

               
Conread position:
               
96-475
               

               
Cow position:
               
chr29:25088855-25088479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 77
               

               
Conread position:
               
97-222
               

               
Cow position:
               
chr29:629649-629523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
97-276
               

               
Cow position:
               
chr29:13867099-13867274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
143, 102
               

               
Conread position:
               
97-284
               

               
Cow position:
               
chr29:8004816-8004993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
142, 80
               

               
Conread position:
               
97-300
               

               
Cow position:
               
chr29:13373412-13373209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
171, 98
               

               
Conread position:
               
97-333
               

               
Cow position:
               
chr29:36220645-36220392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
142, 113
               

               
Conread position:
               
97-437
               

               
Cow position:
               
chr29:13639255-13639602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
83, 103
               

               
Conread position:
               
97-466
               

               
Cow position:
               
chr29:19756540-19756184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
97-469
               

               
Cow position:
               
chr29:34745548-34745921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
203, 33
               

               
Conread position:
               
97-469
               

               
Cow position:
               
chr29:40097073-40096698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 68
               

               
Conread position:
               
97-475
               

               
Cow position:
               
chr29:6217434-6217820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
82, 66
               

               
Conread position:
               
97-488
               

               
Cow position:
               
chr29:16195951-16195565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 88
               

               
Conread position:
               
97-488
               

               
Cow position:
               
chr29:22175792-22175406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 102
               

               
Conread position:
               
98-245
               

               
Cow position:
               
chr29:16365775-16365920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
98-445
               

               
Cow position:
               
chr29:17409445-17409086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
170, 98
               

               
Conread position:
               
98-468
               

               
Cow position:
               
chr29:749797-750164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
143, 41
               

               
Conread position:
               
100-299
               

               
Cow position:
               
chr29:27873709-27873515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
140, 114
               

               
Conread position:
               
100-462
               

               
Cow position:
               
chr29:45005521-45005876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
156, 96
               

               
Conread position:
               
104-458
               

               
Cow position:
               
chr29:40853032-40852675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 105
               

               
Conread position:
               
106-245
               

               
Cow position:
               
chr29:8686432-8686299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
107-207
               

               
Cow position:
               
chr29:39285596-39285496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-462
               

               
Cow position:
               
chr29:28868744-28868371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 112
               

               
Conread position:
               
118-409
               

               
Cow position:
               
chr29:41365199-41364902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 45
               

               
Conread position:
               
119-401
               

               
Cow position:
               
chr29:3100178-3100461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
99, 160
               

               
Conread position:
               
128-539
               

               
Cow position:
               
chr29:11634903-11634498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 24
               

               
Conread position:
               
129-469
               

               
Cow position:
               
chr29:17033-17372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
142-462
               

               
Cow position:
               
chr29:2071505-2071828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
144-298
               

               
Cow position:
               
chr29:13487015-13486861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
148-466
               

               
Cow position:
               
chr29:17131559-17131871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 64
               

               
Conread position:
               
170-469
               

               
Cow position:
               
chr29:12004724-12005031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
203-463
               

               
Cow position:
               
chr29:16757066-16756794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
207-411
               

               
Cow position:
               
chr29:23710500-23710291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
61, 80
               

               
Conread position:
               
207-420
               

               
Cow position:
               
chr29:2533066-2532843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
215-475
               

               
Cow position:
               
chr29:37292778-37292503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 165
               

               
Conread position:
               
315-544
               

               
Cow position:
               
chr29:41076140-41076369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
34, 157
               

               
Conread position:
               
330-543
               

               
Cow position:
               
chr29:31156318-31156530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 30
               
Show alignments to all cow chromosomes.